Conformational dynamics of a 5S rRNA hairpin domain containing loop D and a single nucleotide bulge

Biophysical Journal

Volumn 79, Issue 3, 2000, Pages 1213-1227

  Sarzynska, Joanna ^a,b   Kulinski, Tadeusz ^b   Nilsson, Lennart ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

^b INSTITUTE OF BIOORGANIC CHEMISTRY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; RNA 5S; SODIUM ION; URIDINE DERIVATIVE;

ARTICLE; CONFORMATIONAL TRANSITION; HYDROGEN BOND; MOLECULAR DYNAMICS; RNA ANALYSIS; RNA STRUCTURE; SIMULATION; STRUCTURE ANALYSIS;

EID: 0033855843     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(00)76376-4     Document Type: Article

References (4)

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2. Arnott, S., P. J. C. Smith, and R. Chandrasekaran. 1976. Atomic coordinates and molecular conformations for DNA-DNA, RNA-RNA and DNA-RNA helices. In CRN Handbook of Biochemistry and Molecular Biology: Nucleic Acids. G. D. Fasman, editor. Cleveland, OH. 411-22.
3. Auffinger, P., and E. Westhof. 1996. H-Bond stability in the tRNA Asp anticodon hairpin: 3 ns of multiple molecular dynamic simulations. Biophysical J. 71:940-954.
4. Ban, N., P. Nissen, J. Hansen, M. Capel, P. B. Moore, and T. Steitz. 1999. Placement of protein and RNA structures into a 5 Å -resolution map of the 50S ribosomal subunit. Nature. 400:841-847.