Closing loop base pairs in RNA loop-loop complexes: Structural behavior, interaction energy and solvation analysis through molecular dynamics simulations

Journal of Molecular Modeling

Volumn 10, Issue 5-6, 2004, Pages 408-417

  Golebiowski, Jérôme ^a   Antonczak, Serge ^a   Fernandez Carmona, Juan ^a   Condom, Roger ^a   Cabrol Bass, Daniel ^a  

^a UNIVERSITÉ CÔTE D'AZUR   (France)

Author keywords

Energy; Mismatch; Molecular dynamics; RNA; Simulation

Indexed keywords

MAGNESIUM; RNA; WATER;

ARTICLE; BASE MISPAIRING; BASE PAIRING; COMPUTER PROGRAM; GEOMETRY; METHODOLOGY; MOLECULAR DYNAMICS; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; PROCESS MODEL; PROCESS OPTIMIZATION; PROTEIN BINDING; QUANTITATIVE ANALYSIS; SOLVATION;

APTAMERS, NUCLEOTIDE; BASE PAIR MISMATCH; BASE PAIRING; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; HIV LONG TERMINAL REPEAT; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; RNA; WATER;

HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 10944272174     PISSN: 16102940     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00894-004-0216-7     Document Type: Article

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