High-Pressure NMR Studies in Proteins

Annual Reports on NMR Spectroscopy

Volumn 57, Issue , 2006, Pages 177-203

  Kremer, Werner ^a  

^a UNIVERSITY OF REGENSBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33645943697     PISSN: 00664103     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0066-4103(05)57004-2     Document Type: Article

References (108)

1. Silva J.L., Foguel D., and Royer C.A. Trends Biochem. Sci. 26 (2001) 612-618
2. Akasaka K., and Yamada H. Methods Enzymol. 338 (2001) 134-158
3. Jonas J. Science 216 (1982) 1179-1184
4. Gross M., and Jaenicke R. Eur. J. Biochem. 221 (1994) 617-630
5. Jaenicke R. Annu. Rev. Biophys. Bioeng. 10 (1981) 1-67
6. Morild E. Adv. Protein Chem. 34 (1981) 93-166
7. Heremans K. Annu. Rev. Biophys. Bioeng. 11 (1982) 1-21
8. Weber G., and Drickamer H.G. Q. Rev. Biophys. 16 (1983) 89-112
9. Mozhaev V.V., Heremans K., Frank J., Masson P., and Balny C. Proteins 24 (1996) 81-91
10. Silva J.L., and Weber G. Annu. Rev. Phys. Chem. 44 (1993) 89-113
11. Silva J.L., Foguel D., Da Poian A.T., and Prevelige P.E. Curr. Opin. Struct. Biol. 6 (1996) 166-175
12. Randolph T.W., Seefeldt M., and Carpenter J.F. Biochim. Biophys. Acta 1595 (2002) 224-234
13. Jonas J., and Jonas A. Annu. Rev. Biophys. Biomol. Struct. 23 (1994) 287-318
14. Jonas J., Ballard L., and Nash D. Biophys. J. 75 (1998) 445-452
15. Jonas J. Biochim. Biophys. Acta 1595 (2002) 145-159
16. K. E. Prehoda, E. S. Mooberry and J. L. Markley, High pressure effects on protein Structure, in Protein Dynamics, Function and Design, O. Jardetzky and J.-F. Lefevre, eds., NATO ASI Series, Plenum press, 1998, 59-86.
17. Winter R. Annu. Rep. NMR Spectrosc. 50 (2003) 163-200
18. Akasaka K., and Li H. Biochemistry 40 (2001) 8665-8671
19. Akasaka K. Pure Appl. Chem. 75 (2003) 927-936
20. Akasaka K. Biochemistry 42 (2003) 10875-10885
21. Kamatari Y.O., Kitahara R., Yamada H., Yokoyama S., and Akasaka K. Methods 34 (2004) 133-143
22. K. Akasaka, Probing conformational fluctuation of proteins by pressure perturbation. Chem. Rev. Thematic Issue "Protein Dynamics and Folding" (Guest Editor: Prof. A.J.Wand), 2005.
23. Yamada H. Rev. Sci. Instr. 45 (1974) 640
24. Völkl G., Lang E., and Lüdemann H.D. Berichte Bunsengesellschaft Physikalische Chemie 83 (1979) 722-729
25. Wagner G. FEBS Lett 112 (1980) 280-284
26. Jonas J. Rev. Sci. Instr. 43 (1972) 643
27. Jonas J. Rev. Sci. Instr. 41 (1970) 1240
28. Ballard L., Reiner C., and Jonas J. J. Magn Reson. A 123 (1996) 81-86
29. Ballard L., Yu A., Reiner C., and Jonas J. J. Magn. Reson. 133 (1998) 190-193
30. H. Yamada, Glass cell method for high-pressure, high-resolution NMR measurements. Application to the studies of pressure effects on molecular conformation and structure, in J.Jonas, ed., High Pressure NMR in the Springer Series NMR Basic Principles and Progress, Vol. 24, P.Diehl, E. Fluck, H. Günther, R. Kosfeld and J. Seelig eds., Springer-Verlag, Berlin, 1990, 233-263.
31. Lang E.W., and -D. Lüdemann H. Prog. Nucl. Magn. Reson. Spectrosc. 25 (1993) 507-633
32. W. E. Price and H.-D. Lüdemann, NMR and diaphragm-cell techniques for the study of molecular dynamics in fluids, in High Pressure Techniques in Chemistry and Physics: A Practical Approach, W. B. Holzapfel and N. S. Isaacs, eds., Oxford University Press, Oxford, 1997, 225.
33. Roe C., and Sapphire D. J. Magn. Reson. 63 (1985) 388-391
34. Urbauer J.L., Ehrhardt M.R., Bieber R.J., Flynn P.F., and Wand A.J. J. Am. Chem. Soc. 118 (1996) 11329-11330
35. Arnold M.R., Kalbitzer H.R., and Kremer W. J. Magn. Reson. 161 (2003) 127-131
36. Wu W.J., Vidugiris G., Mooberry E.S., Westler W.M., and Markley J.L. J. Magn. Reson. 164 (2003) 84-91
37. Yamada H., Nishikawa K., Honda M., Shimura T., Akasaka K., and Tabayashi K. Rev. Sci. Instr. 72 (2001) 1463-1471
38. Dobson C.M. Nature 426 (2003) 884-890
39. Dobson C.M. Semin. Cell Dev. Biol. 15 (2004) 3-16
40. Dobson C.M. Methods 34 (2004) 4-14
41. Foguel D., and Silva J.L. Biochemistry 43 (2004) 11361-11370
42. Randolph T.W., Seefeldt M., and Carpenter J.F. Biochim. Biophys. Acta 1595 (2002) 224-234
43. Kuwata K., Li H., Yamada H., Legname G., Prusiner S.B., Akasaka K., and James T.L. Biochemistry 41 (2002) 12277-12283
44. Niraula T.N., Haraoka K., Ando Y., Li H., Yamada H., and Akasaka K. J. Mol. Biol. 320 (2002) 333-342
45. Kuwata K., Kamatari Y.O., Akasaka K., and James T.L. Biochemistry 43 (2004) 4439-4446
46. W. Kremer, N. Kachel, R. Zahn and H. R. Kalbitzer, submitted manuscript.
47. Randolph T.W., Seefeldt M., and Carpenter J.F. Biochim. Biophys. Acta 1595 (2002) 224-234
48. Torrent J., Alvarez-Martinez M.T., Heitz F., Liautard J.P., Balny C., and Lange R. Biochemistry 42 (2003) 1318-1325
49. Torrent J., Alvarez-Martinez M.T., Harricane M.C., Heitz F., Liautard J.P., Balny C., and Lange R. Biochemistry 43 (2004) 7162-7170
50. Torrent J., Alvarez-Martinez M.T., Liautard J.P., Balny C., and Lange R. Protein Sci 14 (2005) 956-967
51. Cordeiro Y., Kraineva J., Ravindra R., Lima L.M., Gomes M.P.B., Foguel D., Winter R., and Silva J.L. J. Biol. Chem. 279 (2004) 32354-32359
52. Bundi A., and Wüthrich K. Biopolymers 18 (1979) 299-311
53. Bundi A., and Wüthrich K. Biopolymers 18 (1979) 285-297
54. Wishart D.S., Bigam C.G., Holm A., Hodges R.S., and Sykes B.D. J. Biomol. NMR 5 (1995) 67-81
55. Wishart D.S., Bigam C.G., Yao J., Abildgaard F., Dyson H.J., Oldfield E., Markley J.L., and Sykes B.D. J. Biomol. NMR 6 (1995) 135-140
56. Hoffmann R., Reichert I., Wachs W.O., Zeppezauer M., and Kalbitzer H.R. Int. J. Pept. Protein Res. 44 (1994) 193-198
57. Hoffmann R., Wachs W.O., Berger R.G., Kalbitzer H.R., Waidelich D., Bayer E., Wagner-Redeker W., and Zappezauer M. Int. J. Pept. Protein Res. 45 (1995) 26-34
58. Hoffmann R., Hoffmann T., Tholey A., Schulte A.C., and Kalbitzer H.R. J. Pept. Res. 49 (1997) 163-173
59. Li H., Yamada H., and Akasaka K. Biochemistry 37 (1998) 1167-1173
60. Li H., Yamada H., Akasaka K., and Gronenborn A.M. J. Biomol. NMR 18 (2000) 207-216
61. Arnold M.R., Kremer W., Lüdemann H.D., and Kalbitzer H.R. Biophys. Chem. 96 (2002) 129-140
62. Bernhardt G., Jaenicke R., and Lüdemann H.D. Appl. Environ. Microbiol. 53 (1987) 1876-1879
63. Kremer W., and Kalbitzer H.R. Methods Enzymol 339 (2001) 3-19
64. Neuman R.C., Kauzmann W., and Zipp A. J. Phys. Chem. 77 (1973) 2687-2691
65. Kalbitzer H.R., Görler A., Li H., Dubovskii P.V., Hengstenberg W., Kowolik C., Yamada H., and Akasaka K. Protein Sci. 9 (2000) 693-703
66. Némethy G., and Printz M.P. Macromolecules 5 (1972) 755-758
67. Tjandra N., and Bax A. Science 278 (1997) 1111-1114
68. Bax A. Protein Sci 12 (2003) 1-16
69. Griesinger C., Peti W., Meiler J., and Bruschweiler R. Methods Mol. Biol. 278 (2004) 107-121
70. Tjandra N., Marquardt J., and Clore G.M. J. Magn. Reson. 142 (2000) 393-396
71. Brunner E., Arnold M.R., Kremer W., and Kalbitzer H.R. J. Biomol. NMR 21 (2001) 173-176
72. Kitahara R., Yamada H., Akasaka K., and Wright P.E. J. Mol. Biol. 320 (2002) 311-319
73. Lassalle M.W., Li H., Yamada H., Akasaka K., and Redfield C. Protein Sci 12 (2003) 66-72
74. Kuwata K., Li H., Yamada H., Batt C.A., Goto Y., and Akasaka K. J. Mol. Biol. 305 (2001) 1073-1083
75. Akasaka K., Li H., Yamada H., Li R., Thoresen T., and Woodward C.K. Protein Sci 8 (1999) 1946-1953
76. Li H., Yamada H., and Akasaka K. Biophys. J. 77 (1999) 2801-2812
77. Marchi M., and Akasaka K. J. Phys Chem. B 105 (2001) 711-714
78. Kitahara R., Sareth S., Yamada H., Ohmae E., Gekko K., and Akasaka K. Biochemistry 39 (2000) 12789-12795
79. Hata K., Kono R., Fujisawa M., Kitahara R., Kamatari Y.O., Akasaka K., and Xu Y. Cell Mol. Biol. (Noisy. -le-grand) 50 (2004) 311-316
80. Inoue K., Yamada H., Imoto T., and Akasaka K. J. Biomol. NMR 12 (1998) 535-541
81. Hattori M., Li H., Yamada H., Akasaka K., Hengstenberg W., Gronwald W., and Kalbitzer H.R. Protein Sci 13 (2004) 3104-3114
82. Canalia M., Malliavin T.E., Kremer W., and Kalbitzer H.R. Biopolymers 74 (2004) 377-388
83. Akasaka K., Tezuka T., and Yamada H. J. Mol. Biol. 271 (1997) 671-678
84. Kamatari Y.O., Yamada H., Akasaka K., Jones J.A., Dobson C.M., and Smith L.J. Eur. J. Biochem. 268 (2001) 1782-1793
85. Refaee M., Tezuka T., Akasaka K., and Williamson M.P. J. Mol. Biol. 327 (2003) 857-865
86. Iwadate M., Asakura T., Dubovskii P.V., Yamada H., Akasaka K., and Williamson M.P. J. Biomol. NMR 19 (2001) 115-124
87. Kitahara R., Royer C., Yamada H., Boyer M., Saldana J.L., Akasaka K., and Roumestand C. J. Mol. Biol. 320 (2002) 609-628
88. Inoue K., Yamada H., Akasaka K., Herrmann C., Kremer W., Maurer T., Doker R., and Kalbitzer H.R. Nat. Struct. Biol. 7 (2000) 547-550
89. Inoue K., Maurer T., Yamada H., Herrmann C., Horn G., Kalbitzer H.R., and Akasaka K. FEBS Lett. 506 (2001) 180-184
90. Kitahara R., Yamada H., and Akasaka K. Biochemistry 40 (2001) 13556-13563
91. Kitahara R., and Akasaka K. Proc. Natl. Acad. Sci. U.S.A. 100 (2003) 3167-3172
92. Kitahara R., Yokoyama S., and Akasaka K. J. Mol. Biol. 347 (2005) 277-285
93. Sareth S., Li H., Yamada H., Woodward C.K., and Akasaka K. FEBS Lett. 470 (2000) 11-14
94. Orekhov V.Y., Dubovskii P.V., Yamada H., Akasaka K., and Arseniev A.S. J. Biomol. NMR 17 (2000) 257-263
95. Hattori M., Li H., Yamada H., Akasaka K., Hengstenberg W., Gronwald W., and Kalbitzer H.R. Protein Sci. 13 (2004) 3104-3114
96. Ragona L., Fogolari F., Zetta L., Perez D.M., Puyol P., De Kruif K., Lohr F., Ruterjans H., and Molinari H. Protein Sci 9 (2000) 1347-1356
97. Ragona L., Fogolari F., Catalano M., Ugolini R., Zetta L., and Molinari H. J Biol. Chem. 278 (2003) 38840-38846
98. Riek R., Pervushin K., and Wüthrich K. Trends Biochem. Sci. 25 (2000) 462-468
99. Pervushin K. Q. Rev. Biophys. 33 (2000) 161-197
100. Fernandez C., and Wider G. Curr. Opin. Struct. Biol. 13 (2003) 570-580
101. Wider G. Methods Enzymol. 394 (2005) 382-398
102. Foguel D., Suarez M.C., Ferrao-Gonzales A.D., Porto T.C.R., Palmieri L., Einsiedler C.M., Andrade L.R., Lashuel H.A., Lansbury P.T., Kelly J.W., and Silva J.L. PNAS 100 (2003) 9831-9836
103. Tachibana H., Oka T., and Akasaka K. J. Mol. Biol. 314 (2001) 311-320
104. Niraula T.N., Konno T., Li H., Yamada H., Akasaka K., and Tachibana H. PNAS 101 (2004) 4089-4093
105. Desai G., Panick G., Zein M., Winter R., and Royer C.A. J Mol. Biol. 288 (1999) 461-475
106. Woenckhaus J., Kohling R., Thiyagarajan P., Littrell K.C., Seifert S., Royar C.A., and Winter R. Biophys. J. 80 (2001) 1518-1523
107. Winter R., and Dzwolak W. Cell Mol. Biol. (Noisy. -le-grand) 50 (2004) 397-417
108. Winter R., and Dzwolak W. Philos. Trans. A: Math. Phys. Eng. Sci. 363 (2005) 537-562