15N and 1H NMR study of histidine containing protein (HPr) from Staphylococcus carnosus at high pressure

Protein Science

Volumn 9, Issue 4, 2000, Pages 693-703

  Kalbitzer, Hans Robert ^a   Görler, Adrian ^a   Li, Hua ^c   Dubovskii, Peter V ^c,d   Hengstenberg, Wolfgang ^b   Kowolik, Claudia ^b   Yamada, Hiroaki ^c   Akasaka, Kazuyuki ^c  

^a UNIVERSITY OF REGENSBURG   (Germany)

^b RUHR UNIVERSITY BOCHUM   (Germany)

^c KOBE UNIVERSITY   (Japan)

^d SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

Author keywords

High pressure; Histidine containing protein; HPr; NMR spectroscopy; Phosphoenolpyruvate dependent phosphotransferase system; PTS

Indexed keywords

HISTIDINE; HISTIDINE CONTAINING PROTEIN; NITROGEN 15; PHOSPHOENOLPYRUVATE SUGAR PHOSPHOTRANSFERASE; PROTEIN; PROTON; UNCLASSIFIED DRUG; AMIDE; BACTERIAL PROTEIN; NITROGEN; PHOSPHOCARRIER PROTEIN HPR;

ARTICLE; ATMOSPHERIC PRESSURE; CONFORMATIONAL TRANSITION; HYDROGEN BOND; HYPERBARISM; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN STABILITY; PROTON NUCLEAR MAGNETIC RESONANCE; STAPHYLOCOCCUS CARNOSUS; CHEMICAL STRUCTURE; CHEMISTRY; STAPHYLOCOCCUS;

BACTERIA (MICROORGANISMS); STAPHYLOCOCCUS CARNOSUS;

AMIDES; ATMOSPHERIC PRESSURE; BACTERIAL PROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; NITROGEN ISOTOPES; PHOSPHOENOLPYRUVATE SUGAR PHOSPHOTRANSFERASE SYSTEM; PROTEIN CONFORMATION; PROTONS; STAPHYLOCOCCUS;

EID: 0033624703     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.9.4.693     Document Type: Article

References (50)

1. Akasaka K, Li H, Dubovskii P, Kalbitzer HR, Yamada H. 1999a. High-resolution high-pressure NMR spectroscopy. In: Jardetzky O, ed. Application to protein structure, dynamics and folding. NATO ASI Series. Forthcoming.
2. 15N chemical shifts in BPTI. Protein Sci 8:1946-1953.
3. Akasaka K, Tezuka T, Yamada H. 1997. Pressure-induced changes in the folded structure of lysozyme. J Mol Biol 277:671-678.
4. Asakawa N, Kameda T, Kuroki S, Kurosu H, Ando S, Ando I, Shoji A. 1998. Structural studies of hydrogen-bonded peptides and polypeptides by solid-state NMR. Ann Reports NMR Spectr 35:56-137.
5. 1H chemical shifts in proteins. J Biomol NMR 9:359-369.
6. Bodenhausen G, Ruben DJ. 1980. Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy. Chem Phys Lett 69:185-189.
7. Chalikian TV, Breslauer KJ. 1996. On volume changes accompanying conformational transitions of biopolymers. Biopol 39:619-626.
8. Cooper A. 1976. Thermodynamic fluctuations in protein molecules. Proc Natl Acad Sci USA 73:2740-2741.
9. Deutscher J, Reizer J, Fischer C, Galinier A, Saier MH, Steinmetz M. 1994. Loss of protein kinase-catalyzed phosphorylation of HPr, a phosphocarrier protein of the phosphotransferase system, by mutation of the ptsh gene confers catabolite repression resistance to several catabolic genes of Bacillus subtilis. J Bacteriol 176:3336-3344.
10. 1H nuclear-magnetic-resonance assignments and structural characterization of a fusion protein of the α-amylase inhibitor tendamistat with the activation domain of the human-immunodeficiency-virus type-1 tat protein. J Mol Biol 250:672-688.
11. Gekko K, Hasegawa J. 1986. Compressibility-structure relationship of globular proteins. Biochemistry 25:6563-6571.
12. Görler A, Hengstenberg W, Kravanja M, Beneicke W, Maurer T, Kalbitzer HR. 1999. Solution structure of the histidine-containing phosphocarrier protein from Staphylococcus carnosus. Appl Magn Reson 17:465-480.
13. Hahmann M, Maurer T, Lorenz M, Hengstenberg W, Glaser S, Kalbitzer HR. 1998. Structural studies of histidine-containing phosphocarrier protein from Enterococcus faecalis. Eur J Biochem 252:51-58.
14. Heremans K, Smeller L. 1998. Protein structure and dynamics at high pressure. Biocim Biophys A 1386:353-370.
15. Hitchens TK, Bryant RG. 1998. Pressure-dependence of amide hydrogen-deuterium exchange rates for individual sites in T4 lysozyme. Biochemistry 37:5878-5887.
16. Inoue K, Yamada H, Imoto T, Akasaka K. 1998. High pressure NMR study of a small protein, gurmarin. J Biomol NMR 12:535-541.
17. Isaacs NS. 1981. Liquid phase high pressure chemistry. Chapter 3. New York: John Wiley & Sons.
18. Jonas J, Jonas A. 1994. High-pressure NMR spectroscopy of proteins and membranes. Ann Rev Biophys Biom 23:287-318.
19. Jones BE, Rajagopal P, Klevit RE. 1997. Phosphorylation on histidine is accompanied by localized structural changes in the phosphocarrier protein, HPr from Bacillus subtilis. Protein Sci 6:2107-2119.
20. Kabsch W, Sander C. 1983. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopol 22:2577-2637.
21. Kay LE, Keifer P, Saarinen T. 1992. Pure absorption gradient enhanced hetero-nuclear single quantum correlation spectroscopy. J Am Chem Soc 114:10663-10665.
22. Kharakoz DP. 1997. Partial volumes and compressibilities of extended polypeptide chains in aqueous solution: Additivity scheme and implication of protein unfolding at normal and high pressure. Biochemistry 36:10276-10285.
23. Kitchen DB, Reed LH, Levy RM. 1992. Molecular dynamics simulation of solvated protein at high pressure. Biochemistry 31:10083-10093.
24. Kravanja M, Engelmann R, Dossonnet V, Bluggel M, Meyer HE, Frank R, Galinier A, Deutscher J, Schnell N, Hengstenberg W. 1999. The hprK gene of Enterococcus faecalis encodes a novel bifunctional enzyme: The HPr kinase/phosphatase. Mol Microbiol 31:59-66.
25. Kruse R, Hengstenberg W, Beneicke W, Kalbitzer HR. 1993. Involvement of various amino-terminal and carboxyl-terminal residues in the active-site of the histidine-containing protein HPr of the phosphoenolpyruvate-dependent phosphotransferase system of staphylococcus-carnosus - Site-directed mutagenesis with the ptsh gene, biochemical-characterization and NMR-studies of the mutant proteins. Protein Eng 6:417-423.
26. Kundrot CE, Richards FM. 1988. Effect of hydrostatic pressure on the solvent in crystals of hen egg-white lysozyme. J Mol Biol 200:401-410.
27. 15N NMR chemical shift of the glycyl residue of some oligopeptides in the solid state. J Mol Struct 245:69-80.
28. 15N NMR chemical-shifts in proteins and secondary structure. J Biomol NMR 4:341-348.
29. Li H, Yamada H, Akasaka K. 1998. Effect of pressure on individual hydrogen bonds in proteins. Basic pancreatic trypsin inhibitor. Biochemistry 37:1167-1173.
30. Li H, Yamada H, Akasaka K. 1999. Effect of pressure on the tertiary structure and dynamics of folded basic pancreatic trypsin inhibitor. Biophys J 77: 2801-2812.
31. Markley JL, Northrop DB, Royer CA, eds. 1996. High-pressure effects in molecular biophysics and enzymology. Oxford: Oxford University Press.
32. Morishima I. 1987. Current perspectives of high pressure biology. New York: Academic Press, pp 325-333.
33. Neidig KP, Geyer M, Görler A, Antz C, Saffrich R, Beneicke W, Kalbitzer HR. 1995. AURELIA, a program for computer-aided analysis of multidimensional NMR-spectra. J Biomol NMR 6:255-270.
34. Paci E, Marchi M. 1996. Intrinsic compressibility and volume compression in solvated proteins by molecular dynamics simulation at high pressure. Proc Natl Acad Sci USA 93:11609-11614.
35. Palmer AG, Cavanagh J, Byrd RA, Rance M. 1992. Sensitivity improvement in three-dimensional heteronuclear correlation NMR spectroscopy. J Magn Reson 96:416-424.
36. MTL. J Biol Chem 266:6690-6692.
37. Postma PW, Lengeler JW, Jacobson GR. 1993. Phosphoenolpyruvate - carbohydrate phosphotransferase systems of bacteria. Microbiol Rev 57:543-594.
38. Scheck RM, van Nuland NAJ, de Groot BL, Amadei A. 1995. Structure from NMR and molecular dynamics: Distance restraining inhibits motion in the essential subspace. J Biomol NMR 5:106-111.
39. Schleucher J, Schwendinger M, Sattler M, Schmidt P, Schledletzky O, Glaser SJ, Sorensen OW, Griesinger C. 1994. A general enhancement scheme in heteronuclear multidimensional NMR employing pulsed field gradients. J Biomol NMR 4:301-306.
40. Shaka AJ, Barker PB, Freeman R. 1985. Computer-optimized decoupling sheme for wideband applications and low-level operation. J Magn Reson 64:541-552.
41. Tabor S, Richardson CC. 1985. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc Natl Acad Sci USA 82:1074-1078.
42. Urbauer JL, Ehrhardt MR, Bieber RJ, Flynn PF, Wand AJ. 1996. High-resolution triple-resonance NMR spectroscopy of a novel calmodulin peptide complex at kilobar pressures. J Am Chem Soc 118:11329-11330.
43. van Nuland NAJ, Boelens R, Scheck RM, Robillard GT. 1995. High-resolution structure of the phosphorylated form of the histidine-containing phospho-carrier protein HPr from Escherichia coli determined by restrained molecular-dynamics from NMR-NOE data. J Mol Biol 246:180-193.
44. 1H NMR at various pressures. FEBS Lett 112:280-284.
45. 1H NMR chemical shifts in proteins. J Am Chem Soc 105:5948-5949.
46. 15N chemical-shift referencing in biomolecular NMR. J Biomol NMR 6:135-140.
47. Yamada H. 1974. Pressure-resisting glass cell for high-pressure, high-resolution NMR measurement. Rev Sci Instrum 45:640-642.
48. Yamaguchi T, Yamada H, Akasaka K. 1995. Thermodynamics of unfolding of ribonuclease-A under high pressure. A study by proton NMR. J Mol Biol 250:689-694.
49. Yamasaki K, Taniguchi Y, Nakano K, Yamasaki T, Kanaya S, Ootabake M. 1998. Pressure-denatured state of Escherichia coli ribonuclease HI as monitored by Fourier transform infrared and NMR spectroscopy. Biochemistry 37:18001-18009.
50. Zollfrank J, Friedrich J, Vanderkooi JM, Fidy J. 1991. Conformational relaxation of a low-temperature protein as probed by photochemical hole burning. Horseradish peroxidase. Biophys J 59:305-312.