Recovery of novel bacterial diversity from a forested wetland impacted by reject coal

Environmental Microbiology

Volumn 4, Issue 11, 2002, Pages 764-769

  Brofft, Jennifer E ^a   McArthur, J Vaun ^b   Shimkets, Lawrence J ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA; BASE SEQUENCE; COAL; DNA, RIBOSOMAL; GENE LIBRARY; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY; TREES; WATER MICROBIOLOGY;

ACIDIPHILIUM; ACIDIPHILIUM SP.; ACIDOBACTERIUM CAPSULATUM; ARCHAEA; BACTERIA (MICROORGANISMS); FERRIMICROBIUM; LEPTOSPIRILLUM; LEPTOSPIRILLUM FERROOXIDANS; THERMOPLASMA;

EID: 18744372402     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2002.00337.x     Document Type: Article

References (24)

1. Atkinson, T., Gairns, S., Cowan, D.A., Danson, M.J., Hough, D.W., Johnson, D.B., et al. (2000) A microbiological survey of Montserrat Island hydrothermal biotypes. Extremophiles 4: 305-313.
2. Bond, P.L., and Banfield, J.F. (2001) Design and performance of rRNA targeted oligonucleotide probes for in situ detection and phylogenetic identification of microorganisms inhabiting acid mine drainage environments. Microb Ecol 41: 149-161.
3. Bond, P.L., Smriga, S.P., and Banfield, J.F. (2000a) Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage site. Appl Environ Microbiol 66: 3842-3849.
4. Bond, P.L., Druschel, G.K., and Banfield, J.F. (2000b) Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems. Appl Environ Microbiol 66: 4962-4971.
5. Carlson, C.A. (1990) Subsurface leachate migration from a reject coal pile in South Carolina. Water, Air Soil Poll 53: 345-366.
6. Carlson, C.L., and Carlson, C.A. (1992) Impacts of coal pile leachate on a forested wetland in South Carolina. Water, Air Soil Poll 72: 89-109.
7. Davis, E.C., and Boegly, W.J.J. (1981) A review of water quality issues associated with coal storage. J Environ Qual 10: 127-132.
8. Dojka, M.A., Hugenholtz, P., Haack, S.K., and Pace, N.R. (1998) Microbial diversity in a hydrocarbon- and clorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64: 3869-3877.
9. Dojka, M.A., Harris, J.K., and Pace, N.R. (2000) Expanding the known diversity and environmental distribution of uncultured phylogenetic division of Bacteria. Appl Environ Microbiol 66: 1617-1621.
10. 2) dissolution: A case study at Iron Mountain, California. Geomicrobiol J 16: 155-179.
11. Goebel, B.M., and Stackebrandt (1994) The biotechnological importance of molecular diversity studies for metal bioleaching. In Bacterial Diversity and Systematics. Priest, F. and Fewson, C.A. (eds). New York: Plenum Press. pp. 259-273.
12. Hiraishi, A., Matsuzawa, Y., Kanbe, T., and Wakao, N. (2000) Acidisphaera rubrifaciens General nov., sp. nov., an aerobic bacteriochlorophyll-containing bacterium isolated from acidic habitats. Int J Syst Evol Microbiol 50: 1539-1346.
13. Holland, S.M. (2001) Analytic Rarefaction 1.3. University of Georgia.
14. Johnson, B.J. (1998) Biodiversity and ecology of acidophilic microorganisms. FEMS Microbiol Ecol 27: 307-317.
15. Kelly, D.P., and Wood, K.P. (2000) Reclassification of some species of Thiobacillus to the newly designed genera Acidithiobacillus gen. nov., Halothiobacillus, gen. nov., and Themothiobacillus gen. nov. Int J Syst Evol Microbiol 50: 511-516.
16. Lane, D.J. (1991) 16S/23S rRNA sequencing. In Nucleic Acid Sequencing Techniques in Bacterial Systematics. Stackebrandt, E. and Goodfellow, M. (eds). New York: John Wiley and Sons, pp. 115-175.
17. Moyer, C.L., Tiedje, J.M., Dobbs, F.C., and Karl, D.M. (1996) A computer-stimulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl Environ Microbiol 62: 2501-2507.
18. Nogales, B., Moore, E.R., Llobet-Brossa, E., Rossello-Mora, R., Amann, R., and Timmis, K.N. (2000) Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil. Appl Environ Microbiol 67: 1874-1884.
19. Pfennig, N. (1974) Rhodopseudomonas globiformis, sp. n., a new species of the Rhodospirillaceae. Arch Microbiol 100: 197-206.
20. Pizarro, J., Jedlicki, E., Orellana, O., Romero, J., and Espejo, R.T. (1996) Bacterial populations in samples of bioleached copper ore as revealed by analysis of DNA obtained before and after cultivation. Appl Environ Microbiol 62: 1323-1328.
21. Polz, M., and Cavanaugh, C.M. (1998) Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol 64: 3724-3730.
22. Rheims, H., Rainey, F.A., and Stackebrandt, E. (1996) A molecular approach to search for diversity among bacteria in the environment. J Indust Microbiol 17: 159-169.
23. Singleton, D.R., Furlong, M.A., Rathbun, S.L., and Whitman, W.B. (2001) Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 4374-4376.
24. Suzuki, M., Rappe, M.S., and Giovannoni, S.J. (1998) Kinetic bias in estimates of coastal picoplankton community structure by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl Environ Microbiol 64: 4522-4529.