-
1
-
-
0042126087
-
Molecular characterization of new nitrite-oxidizing bacteria using DGGE analysis
-
abstract PH011
-
Alawi, M., Spieck, E., Pommerening-Rõser, A., and Koops, H.-P. (2003) Molecular characterization of new nitrite-oxidizing bacteria using DGGE analysis. BIOspektrum special issue (VAAM): abstract PH011, p. 96.
-
(2003)
BIOspektrum Special Issue (VAAM)
, pp. 96
-
-
Alawi, M.1
Spieck, E.2
Pommerening-Rõser, A.3
Koops, H.-P.4
-
2
-
-
0025099312
-
Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
-
Amann, R.I., Krumholz, L., and Stahl, D.A. (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol 172: 762-770.
-
(1990)
J Bacteriol
, vol.172
, pp. 762-770
-
-
Amann, R.I.1
Krumholz, L.2
Stahl, D.A.3
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R.I., Ludwig, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
0036051360
-
Immunological detection of Nitrospira-like bacteria in various soils
-
Bartosch, S., Hartwig, C., Spieck, E., and Bock, E. (2002) Immunological detection of Nitrospira-like bacteria in various soils. Microb Ecol 43: 26-33.
-
(2002)
Microb Ecol
, vol.43
, pp. 26-33
-
-
Bartosch, S.1
Hartwig, C.2
Spieck, E.3
Bock, E.4
-
5
-
-
70350269693
-
Microbial biofilms
-
Balows, A., Trüper, H.G., Dworkin, M., Harder, W., and Schleifer, K.-H., (eds). New York: Springer
-
de Beer, D., and Stoodley, P. (1999) Microbial biofilms. In The Prokaryotes: an Evolving Electronic Resource for the Microbiological Community. Balows, A., Trüper, H.G., Dworkin, M., Harder, W., and Schleifer, K.-H., (eds). New York: Springer, p. 267.
-
(1999)
The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community
, pp. 267
-
-
De Beer, D.1
Stoodley, P.2
-
6
-
-
0031030476
-
A nitrite microsensor for profiling environmental biofilms
-
de Beer, D., Schramm, A., Santegoeds, C.M., and Kühl, M. (1997) A nitrite microsensor for profiling environmental biofilms. Appl Environ Microbiol 63: 973-977.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 973-977
-
-
De Beer, D.1
Schramm, A.2
Santegoeds, C.M.3
Kühl, M.4
-
7
-
-
0025918840
-
Microelectrode measurement of ammonium profiles in freshwater sediment
-
de Beer, D., Sweerts, J.-P.R.A., and van den Heuvel, J.C. (1991) Microelectrode measurement of ammonium profiles in freshwater sediment. FEMS Microbiol Ecol 86: 1-6.
-
(1991)
FEMS Microbiol Ecol
, vol.86
, pp. 1-6
-
-
De Beer, D.1
Sweerts, J.-P.R.A.2
Van Den Heuvel, J.C.3
-
8
-
-
0000407465
-
The genus Nitrobacter and related genera
-
Balows, A., Trüper, H.G., Dworkin, M., Harder, M and Schleifer, K.-H., (eds). Springer Verlag, New York
-
Bock, E.K., and Koops, H.-P. (1992) The genus Nitrobacter and related genera. In The Prokaryotes. Balows, A., Trüper, H.G., Dworkin, M., Harder, M and Schleifer, K.-H., (eds). Springer Verlag, New York, pp. 2302-2309.
-
(1992)
The Prokaryotes
, pp. 2302-2309
-
-
Bock, E.K.1
Koops, H.-P.2
-
9
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
-
Daims, H., Brühl, A., Amann, R., Schleifer, K.-H., and Wagner, M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brühl, A.2
Amann, R.3
Schleifer, K.-H.4
Wagner, M.5
-
10
-
-
0035512205
-
In situ characterization of Nitrospiralike nitrite oxidizing bacteria active in wastewater treatment plants
-
Daims, H., Nielsen, J.L., Nielsen, P.H., Schleifer, K.-H., and Wagner, M. (2001a) In situ characterization of Nitrospiralike nitrite oxidizing bacteria active in wastewater treatment plants. Appl Environ Microbiol 67: 5273-5284.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5273-5284
-
-
Daims, H.1
Nielsen, J.L.2
Nielsen, P.H.3
Schleifer, K.-H.4
Wagner, M.5
-
11
-
-
0035653625
-
Cultivation-independent, semiautomated determination of absolute bacterial cell numbers in environmental samples by fluorescence in situ hybridization
-
Daims, H., Ramsing, N.B., Schleifer, K.-H., and Wagner, M. (2001b) Cultivation-independent, semiautomated determination of absolute bacterial cell numbers in environmental samples by fluorescence in situ hybridization. Appl Environ Microbiol 67: 5810-5818.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5810-5818
-
-
Daims, H.1
Ramsing, N.B.2
Schleifer, K.-H.3
Wagner, M.4
-
12
-
-
0036136954
-
Quantification of Nitrosomonas oligotropha-like ammonia- oxidizing bacteria and Nitrospira spp. from full-scale wastewater treatment plants by competitive PCR
-
Dionisi, H.M., Layton, A.C., Harms, G., Gregory, I.R., Robinson, K.G., and Sayler, G.S. (2002) Quantification of Nitrosomonas oligotropha-like ammonia- oxidizing bacteria and Nitrospira spp. from full-scale wastewater treatment plants by competitive PCR. Appl Environ Microbiol 68: 245-253.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 245-253
-
-
Dionisi, H.M.1
Layton, A.C.2
Harms, G.3
Gregory, I.R.4
Robinson, K.G.5
Sayler, G.S.6
-
13
-
-
0029121005
-
A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship
-
Ehrich, S., Behrens, D., Lebedeva, E., Ludwig, W., and Bock, E. (1995) A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship. Arch Microbiol 164: 16-23.
-
(1995)
Arch Microbiol
, vol.164
, pp. 16-23
-
-
Ehrich, S.1
Behrens, D.2
Lebedeva, E.3
Ludwig, W.4
Bock, E.5
-
14
-
-
0035286749
-
Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm
-
Gieseke, A., Purkhold, U., Wagner, M., Amann, R., and Schramm, A. (2001) Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Appl Environ Microbiol 67: 1351-1362.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1351-1362
-
-
Gieseke, A.1
Purkhold, U.2
Wagner, M.3
Amann, R.4
Schramm, A.5
-
15
-
-
0000022967
-
Nitrification in lakes
-
Prosser, J.I., (ed.). Oxford, Washington DC: IRL Press
-
Hall, G.H. (1986) Nitrification in lakes. In Nitrification. Prosser, J.I., (ed.). Oxford, Washington DC: IRL Press, pp. 127-156.
-
(1986)
Nitrification
, pp. 127-156
-
-
Hall, G.H.1
-
16
-
-
0031680225
-
Application of molecular biological techniques to a seasonal study of ammonia oxidation in a eutrophic freshwater lake
-
Hastings, R.C., Saunders, J.R., Hall, G.H., Pickup, R.W., and McCarthy, A.J. (1998) Application of molecular biological techniques to a seasonal study of ammonia oxidation in a eutrophic freshwater lake. Appl Environ Microbiol 64: 3674-3682.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3674-3682
-
-
Hastings, R.C.1
Saunders, J.R.2
Hall, G.H.3
Pickup, R.W.4
McCarthy, A.J.5
-
17
-
-
0031975148
-
Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria
-
Hovanec, T.A., Taylor, L.T., Blakis, A., and DeLong, E.F. (1998) Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria. Appl Environ Microbiol 64: 258-264.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 258-264
-
-
Hovanec, T.A.1
Taylor, L.T.2
Blakis, A.3
DeLong, E.F.4
-
18
-
-
0027338563
-
Microscale distribution of nitrification activity in sediment determined with a shielded microsensor for nitrate
-
Jensen, K., Revsbech, N.P., and Nielsen, L.P. (1993) Microscale distribution of nitrification activity in sediment determined with a shielded microsensor for nitrate. Appl Environ Microbiol 59: 3287-3296.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 3287-3296
-
-
Jensen, K.1
Revsbech, N.P.2
Nielsen, L.P.3
-
19
-
-
0028184191
-
Estimation of nitrification and denitrification from microprofiles of oxygen and nitrate in model sediment systems
-
Jensen, K., Sloth, N.P., Risgaard-Petersen, N., Rysgaard, S., and Revsbech, N.P. (1994) Estimation of nitrification and denitrification from microprofiles of oxygen and nitrate in model sediment systems. Appl Environ Microbiol 60: 2094-2100.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 2094-2100
-
-
Jensen, K.1
Sloth, N.P.2
Risgaard-Petersen, N.3
Rysgaard, S.4
Revsbech, N.P.5
-
20
-
-
0032147190
-
Combined molecular and conventional analysis of nitrifying bacterial diversity in activated sludge, Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations
-
Juretschko, S., Timmermann, G., Schmidt, M., Schleifer, K.-H., Pommerening-Röser, A., Koops, H.-P., and Wagner, M. (1998) Combined molecular and conventional analysis of nitrifying bacterial diversity in activated sludge. Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl Environ Microbiol 64: 3042-3051.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3042-3051
-
-
Juretschko, S.1
Timmermann, G.2
Schmidt, M.3
Schleifer, K.-H.4
Pommerening-Röser, A.5
Koops, H.-P.6
Wagner, M.7
-
21
-
-
0032436805
-
Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridisation
-
Kowalchuk, G.A., Bodelier, P.L.E., Heilig, G.H.J., Stephen, J.R., and Laanbroek, H.J. (1998) Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridisation. FEMS Microbiol Ecol 27: 339-350.
-
(1998)
FEMS Microbiol Ecol
, vol.27
, pp. 339-350
-
-
Kowalchuk, G.A.1
Bodelier, P.L.E.2
Heilig, G.H.J.3
Stephen, J.R.4
Laanbroek, H.J.5
-
22
-
-
0344765523
-
Microbial community composition of wadden sea sediments as revealed by fluorescence in situ hybridization
-
Llobet-Brossa, E., Rossello-Mora, R., and Amann, R. (1998) Microbial community composition of wadden sea sediments as revealed by fluorescence in situ hybridization. Appl Environ Microbiol 64: 2691-2696.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2691-2696
-
-
Llobet-Brossa, E.1
Rossello-Mora, R.2
Amann, R.3
-
23
-
-
0031692487
-
Biosensor determination of the microscale distribution of nitrate, nitrate assimilation, nitrification, and denitrification in a diatom-inhabited freshwater sediment
-
Lorenzen, J., Larsen, L.H., Kjaer, T., and Revsbech, N.-P. (1998) Biosensor determination of the microscale distribution of nitrate, nitrate assimilation, nitrification, and denitrification in a diatom-inhabited freshwater sediment. Appl Environ Microbiol 64: 3264-3269.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3264-3269
-
-
Lorenzen, J.1
Larsen, L.H.2
Kjaer, T.3
Revsbech, N.-P.4
-
24
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
-
Manz, W., Amann, R., Ludwig, W., Wagner, M., and Schleifer, K.-H. (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Microbiol 15: 593-600.
-
(1992)
Syst Appl Microbiol
, vol.15
, pp. 593-600
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.-H.5
-
25
-
-
0030001221
-
Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria
-
Mobarry, B.K., Wagner, M., Urbain, V., Rittmann, B.E., and Stahl, D.A. (1996) Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl Environ Microbiol 62: 2156-2162.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2156-2162
-
-
Mobarry, B.K.1
Wagner, M.2
Urbain, V.3
Rittmann, B.E.4
Stahl, D.A.5
-
26
-
-
0033950689
-
Effect of long-term idle periods on the performance of sequencing batch reactors
-
Morgenroth, E., Obermayer, A., Arnold, E., Brühl, A., Wagner, M., and Wilderer, P.E. (2000) Effect of long-term idle periods on the performance of sequencing batch reactors. Water Sci Technol 41: 105-113.
-
(2000)
Water Sci Technol
, vol.41
, pp. 105-113
-
-
Morgenroth, E.1
Obermayer, A.2
Arnold, E.3
Brühl, A.4
Wagner, M.5
Wilderer, P.E.6
-
27
-
-
0032976059
-
In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes
-
Okabe, S., Satoh, H., and Watanabe, Y. (1999) In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes. Appl Environ Microbiol 65: 3182-3191.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3182-3191
-
-
Okabe, S.1
Satoh, H.2
Watanabe, Y.3
-
28
-
-
0034160045
-
Nitrification in the water column and sediment of a hypereutrophic lake and adjoining river system
-
Pauer, J.J., and Auer, M.T. (2000) Nitrification in the water column and sediment of a hypereutrophic lake and adjoining river system. Water Res 34: 1247-1254.
-
(2000)
Water Res
, vol.34
, pp. 1247-1254
-
-
Pauer, J.J.1
Auer, M.T.2
-
29
-
-
0029188956
-
Effects of Tubifex tubifex (Oligichaeta, Tubificidae) on N-mineralization in freshwater sediments, measured with N-15 isotopes
-
Pelegri, S.P., and Blackburn, T.H. (1995) Effects of Tubifex tubifex (Oligichaeta, Tubificidae) on N-mineralization in freshwater sediments, measured with N-15 isotopes. Aquat Microb Ecol 9: 289-294.
-
(1995)
Aquat Microb Ecol
, vol.9
, pp. 289-294
-
-
Pelegri, S.P.1
Blackburn, T.H.2
-
30
-
-
0029662462
-
Nitrogen cycling in lake sediments bioturbated by Chironomus plumosus larvae, under different degrees of oxygenation
-
Pelegri, S.P., and Blackburn, T.H. (1996) Nitrogen cycling in lake sediments bioturbated by Chironomus plumosus larvae, under different degrees of oxygenation. Hydrobiologia 325: 231-238.
-
(1996)
Hydrobiologia
, vol.325
, pp. 231-238
-
-
Pelegri, S.P.1
Blackburn, T.H.2
-
31
-
-
33751536386
-
Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
-
Paul, J., (ed.) San Diego: Academic Press
-
Pernthaler, J., Glöckner, F.O., Schönhuber, W., and Amann, R. (2001) Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. In Methods in Microbiology. Vol. 30. Paul, J., (ed.) San Diego: Academic Press, pp. 207-226.
-
(2001)
Methods in Microbiology
, vol.30
, pp. 207-226
-
-
Pernthaler, J.1
Glöckner, F.O.2
Schönhuber, W.3
Amann, R.4
-
32
-
-
0024822090
-
Autotrophic nitrification in bacteria
-
Prosser, J.I. (1989) Autotrophic nitrification in bacteria. Adv Microb Physiol 30: 125-181.
-
(1989)
Adv Microb Physiol
, vol.30
, pp. 125-181
-
-
Prosser, J.I.1
-
33
-
-
0036427445
-
Cultivation-based and molecular approaches to characterisation of terrestrial and aquatic nitrifiers
-
Prosser, J.I., and Embley, T. (2002) Cultivation-based and molecular approaches to characterisation of terrestrial and aquatic nitrifiers. Antonie Van Leeuwenhoek 81: 165-179.
-
(2002)
Antonie Van Leeuwenhoek
, vol.81
, pp. 165-179
-
-
Prosser, J.I.1
Embley, T.2
-
34
-
-
84986767568
-
An oxygen microelectrode with a guard cathode
-
Revsbech, N.P. (1989) An oxygen microelectrode with a guard cathode. Limnol Oceanogr 34: 474-478.
-
(1989)
Limnol Oceanogr
, vol.34
, pp. 474-478
-
-
Revsbech, N.P.1
-
35
-
-
0043127945
-
In situ analysis of structure and activity of the nitrifying community in biofilms, aggregates, and sediments
-
in press
-
Schramm, A. (2003) In situ analysis of structure and activity of the nitrifying community in biofilms, aggregates, and sediments. Geomicrobiol J 20: in press.
-
(2003)
Geomicrobiol J
, vol.20
-
-
Schramm, A.1
-
36
-
-
0031684927
-
Identification and activity in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor
-
Schramm, A., de Beer, D., Wagner, M., and Amann, R. (1998) Identification and activity in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor. Appl Environ Microbiol 64: 3480-3485.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3480-3485
-
-
Schramm, A.1
De Beer, D.2
Wagner, M.3
Amann, R.4
-
37
-
-
0032812283
-
Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: Quantification by in situ hybridization and the use of microsensors
-
Schramm, A., de Beer, D., van den Heuvel, J.C., Ottengraf, S., and Amann, R. (1999) Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microsensors. Appl Environ Microbiol 65: 3690-3696.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3690-3696
-
-
Schramm, A.1
De Beer, D.2
Van Den Heuvel, J.C.3
Ottengraf, S.4
Amann, R.5
-
38
-
-
0034551698
-
Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm
-
Schramm, A., de Beer, D., Gieseke, A., and Amann, R. (2000) Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm. Environ Microbiol 2: 680-686.
-
(2000)
Environ Microbiol
, vol.2
, pp. 680-686
-
-
Schramm, A.1
De Beer, D.2
Gieseke, A.3
Amann, R.4
-
39
-
-
0026360036
-
Numbers, activities, and diversity of autotrophic ammonia-oxidizing bacteria in a freshwater, eutrophic lake sediment
-
Smorczewski, W.T., and Schmidt, E.L. (1991) Numbers, activities, and diversity of autotrophic ammonia-oxidizing bacteria in a freshwater, eutrophic lake sediment. Can J Microbiol 37: 828-833.
-
(1991)
Can J Microbiol
, vol.37
, pp. 828-833
-
-
Smorczewski, W.T.1
Schmidt, E.L.2
-
40
-
-
0037087929
-
Bioturbation effects of Chironomus riparius on the benthic N-cycle as measured using microsensors and microbiological assays
-
Stief, P., and de Beer, D. (2002) Bioturbation effects of Chironomus riparius on the benthic N-cycle as measured using microsensors and microbiological assays. Aquat Microb Ecol 27: 175-185.
-
(2002)
Aquat Microb Ecol
, vol.27
, pp. 175-185
-
-
Stief, P.1
De Beer, D.2
-
41
-
-
0036527049
-
Small-scale distribution of interstitial nitrite in freshwater sediment microcosms, the role of nitrate and oxygen availability, and sediment permeability
-
Stief, P., de Beer, D., and Neumann, D. (2002) Small-scale distribution of interstitial nitrite in freshwater sediment microcosms, the role of nitrate and oxygen availability, and sediment permeability. Microb Ecol 43: 367-378.
-
(2002)
Microb Ecol
, vol.43
, pp. 367-378
-
-
Stief, P.1
De Beer, D.2
Neumann, D.3
-
42
-
-
0029825018
-
In situ analysis of nitrifying bacteria in sewage treatment plants
-
Wagner, M., Rath, G., Koops, H.-P., Flood, J., and Amann, R. (1996) In situ analysis of nitrifying bacteria in sewage treatment plants. Water Sci Technol 34: 237-244.
-
(1996)
Water Sci Technol
, vol.34
, pp. 237-244
-
-
Wagner, M.1
Rath, G.2
Koops, H.-P.3
Flood, J.4
Amann, R.5
-
43
-
-
0034885539
-
A comparison of ammonia-oxidiser populations in eutrophic and oligotrophic basins of a large freshwater lake
-
Whitby, C.B., Saunders, J.R., Pickup, R.W., and McCarthy, A.J. (2001) A comparison of ammonia-oxidiser populations in eutrophic and oligotrophic basins of a large freshwater lake. Antonie Van Leeuwenhoek 79: 179-188.
-
(2001)
Antonie Van Leeuwenhoek
, vol.79
, pp. 179-188
-
-
Whitby, C.B.1
Saunders, J.R.2
Pickup, R.W.3
McCarthy, A.J.4
|