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Volumn 37, Issue 3, 1999, Pages 208-217

Assessment of three methods for detection and quantification of nitrite-oxidizing bacteria and Nitrobacter in freshwater sediments (MPN-PCR, MPN-Griess, immunofluorescence)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM DETECTION; BIOMASS PRODUCTION; IMMUNOFLUORESCENCE; MARINE ENVIRONMENT; MICROBIAL CONTAMINATION; MOST PROBABLE NUMBER METHOD; NITRIFICATION; NITRITE OXIDIZING BACTERIA; POLYMERASE CHAIN REACTION;

EID: 0345517136     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002489900144     Document Type: Article
Times cited : (23)

References (50)
  • 1
    • 0000112335 scopus 로고
    • Transformations of ammonia and the environmental impact of nitrifying bacteria
    • Abeliovich A (1992) Transformations of ammonia and the environmental impact of nitrifying bacteria. Biodegradation 3:255-264
    • (1992) Biodegradation , vol.3 , pp. 255-264
    • Abeliovich, A.1
  • 2
    • 0024797508 scopus 로고
    • Comparison of nitrification rates in three branches of the river Rhine
    • Admiraal W, Botermans YJH (1989) Comparison of nitrification rates in three branches of the river Rhine. Biogeochemistry 8:135-151
    • (1989) Biogeochemistry , vol.8 , pp. 135-151
    • Admiraal, W.1    Botermans, Y.J.H.2
  • 3
    • 0021796885 scopus 로고
    • Separation and purification of bacteria from soil
    • Bakken LR (1985) Separation and purification of bacteria from soil. Appl Environ Microbiol 49:1482-1487
    • (1985) Appl Environ Microbiol , vol.49 , pp. 1482-1487
    • Bakken, L.R.1
  • 4
    • 0000000468 scopus 로고
    • Use of nitrifier activity measurements to estimate the efficiency of viable nitrifier counts in soils and sediments
    • Belser LW, Mays EL (1982) Use of nitrifier activity measurements to estimate the efficiency of viable nitrifier counts in soils and sediments. Appl Environ Microbiol 43:945-948
    • (1982) Appl Environ Microbiol , vol.43 , pp. 945-948
    • Belser, L.W.1    Mays, E.L.2
  • 5
    • 0018872733 scopus 로고
    • Growth and kinetics of three genera of ammonium oxidizing nitrifiers
    • Belser LW, Schmidt EL (1980) Growth and kinetics of three genera of ammonium oxidizing nitrifiers. FEMS Microbiol Lett 7:213-216
    • (1980) FEMS Microbiol Lett , vol.7 , pp. 213-216
    • Belser, L.W.1    Schmidt, E.L.2
  • 7
    • 0031105549 scopus 로고    scopus 로고
    • Use of immunofluorescence technique for studying a Nitrobacter population from wastewater treatment plant following discharge in river sediments: First experimental data
    • Bonnet C, Volat B, Bardin R, Degrange V, Montuelle B (1997) Use of immunofluorescence technique for studying a Nitrobacter population from wastewater treatment plant following discharge in river sediments: first experimental data. Water Res 31:661-664
    • (1997) Water Res , vol.31 , pp. 661-664
    • Bonnet, C.1    Volat, B.2    Bardin, R.3    Degrange, V.4    Montuelle, B.5
  • 8
    • 0025573896 scopus 로고
    • Enumeration of nitrite-oxidizing bacteria in grassland soils using a Most Probable Number technique: Effect of nitrite concentration and sampling procedure
    • Both GJ, Gerards S, Laanbroek HJ (1990) Enumeration of nitrite-oxidizing bacteria in grassland soils using a Most Probable Number technique: effect of nitrite concentration and sampling procedure. FEMS Microbiol Ecol 74:277-286
    • (1990) FEMS Microbiol Ecol , vol.74 , pp. 277-286
    • Both, G.J.1    Gerards, S.2    Laanbroek, H.J.3
  • 9
    • 0038767234 scopus 로고    scopus 로고
    • 3 pour mesurer la nitrification autotrophe et son application pour estimer des biomasses de bactéries nitrifiantes
    • 3 pour mesurer la nitrification autotrophe et son application pour estimer des biomasses de bactéries nitrifiantes. Rev Sci Eau 11:283-302
    • (1998) Rev Sci Eau , vol.11 , pp. 283-302
    • Brion, N.1    Billen, G.2
  • 10
    • 0029018038 scopus 로고
    • Detection and counting Nitrobacter populations in soil by PCR
    • Degrange V, Bardin R (1995) Detection and counting Nitrobacter populations in soil by PCR. Appl Environ Microbiol 61:2093-2098
    • (1995) Appl Environ Microbiol , vol.61 , pp. 2093-2098
    • Degrange, V.1    Bardin, R.2
  • 11
    • 0030657845 scopus 로고    scopus 로고
    • Activity, size and structure of a Nitrobacter community as affected by organic carbon and nitrite in sterile soil
    • Degrange V, Lensi R, Bardin R (1997) Activity, size and structure of a Nitrobacter community as affected by organic carbon and nitrite in sterile soil. FEMS Microbiol Ecol 24:173-180
    • (1997) FEMS Microbiol Ecol , vol.24 , pp. 173-180
    • Degrange, V.1    Lensi, R.2    Bardin, R.3
  • 12
    • 0015984393 scopus 로고
    • Autecological study of the chemoautotroph Nitrobacter by immunofluorescence
    • Fliermans CB, Bohlool BB, Schmidt EL (1974) Autecological study of the chemoautotroph Nitrobacter by immunofluorescence. Appl Microbiol 27:124-129
    • (1974) Appl Microbiol , vol.27 , pp. 124-129
    • Fliermans, C.B.1    Bohlool, B.B.2    Schmidt, E.L.3
  • 13
  • 14
    • 0027387175 scopus 로고
    • Rates of nitrification, distribution of nitrifying bacteria, and inorganic N fluxes in northern Bering-Chukchi shelf sediments
    • Henriksen K, Blackburn TH, Lomstein BA, Mc Roy CP (1993) Rates of nitrification, distribution of nitrifying bacteria, and inorganic N fluxes in northern Bering-Chukchi shelf sediments. Cont Shelf Res 13:629-651
    • (1993) Cont Shelf Res , vol.13 , pp. 629-651
    • Henriksen, K.1    Blackburn, T.H.2    Lomstein, B.A.3    Mc Roy, C.P.4
  • 15
    • 0023866522 scopus 로고
    • DNA probe method for the detection of specific microorganisms in the soil bacterial community
    • Holben WE, Jansson JK, Chelm BK, Tiedje JM (1988) DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl Environ Microbiol 54:703-711
    • (1988) Appl Environ Microbiol , vol.54 , pp. 703-711
    • Holben, W.E.1    Jansson, J.K.2    Chelm, B.K.3    Tiedje, J.M.4
  • 16
    • 0019761603 scopus 로고
    • Nitrification en sol acide. I: Mise en évidence de germes autotrophes nitrifiants (genre Nitrobacter) dans un sol forestier sous résineux
    • Josserand A, Bardin R (1981) Nitrification en sol acide. I: Mise en évidence de germes autotrophes nitrifiants (genre Nitrobacter) dans un sol forestier sous résineux. Rev Ecol Biol Sol 18:435-445
    • (1981) Rev Ecol Biol Sol , vol.18 , pp. 435-445
    • Josserand, A.1    Bardin, R.2
  • 17
    • 0019763578 scopus 로고
    • Ecological study of two Nitrobacter serotypes coexisting in the same soil
    • Josserand A, Gay G, Faurie G (1981) Ecological study of two Nitrobacter serotypes coexisting in the same soil. Microb Ecol 7:275-280
    • (1981) Microb Ecol , vol.7 , pp. 275-280
    • Josserand, A.1    Gay, G.2    Faurie, G.3
  • 18
    • 0017610392 scopus 로고
    • Simple and rapid fluorimetric method for DNA microassay
    • Kapuscinski J, Skoczylas B (1977) Simple and rapid fluorimetric method for DNA microassay. Anal Chem 83:252-257
    • (1977) Anal Chem , vol.83 , pp. 252-257
    • Kapuscinski, J.1    Skoczylas, B.2
  • 19
    • 0028091276 scopus 로고
    • Oxygen consumption kinetics of Nitrosomonas europaea and Nitrobacter hamburgensis grown in mixed continuous cultures at different oxygen concentrations
    • Laanbroek HJ, Bodelier PLE, Gerards S (1994) Oxygen consumption kinetics of Nitrosomonas europaea and Nitrobacter hamburgensis grown in mixed continuous cultures at different oxygen concentrations. Arch Microbiol 161:156-162
    • (1994) Arch Microbiol , vol.161 , pp. 156-162
    • Laanbroek, H.J.1    Bodelier, P.L.E.2    Gerards, S.3
  • 20
    • 0025803061 scopus 로고
    • Effect of nitrite concentration and pH on Most Probable Number enumerations of non-growing Nitrobacter spp
    • Laanbroek HJ, Schotman JMT (1991) Effect of nitrite concentration and pH on Most Probable Number enumerations of non-growing Nitrobacter spp. FEMS Microbiol Ecol 85:269-278
    • (1991) FEMS Microbiol Ecol , vol.85 , pp. 269-278
    • Laanbroek, H.J.1    Schotman, J.M.T.2
  • 21
    • 0028985414 scopus 로고
    • Evaluation of methods for extraction of bacteria from soil
    • Lindahl V, Bakken L (1995) Evaluation of methods for extraction of bacteria from soil. FEMS Microbiol Ecol 16:135-142
    • (1995) FEMS Microbiol Ecol , vol.16 , pp. 135-142
    • Lindahl, V.1    Bakken, L.2
  • 22
    • 0028111397 scopus 로고
    • Purification of DNA from estuarine sediments
    • Lovell CR, Piceno Y (1994) Purification of DNA from estuarine sediments. J Microbiol Methods 20:161-174
    • (1994) J Microbiol Methods , vol.20 , pp. 161-174
    • Lovell, C.R.1    Piceno, Y.2
  • 23
    • 0030888983 scopus 로고    scopus 로고
    • Serological determination of Nitrobacter species in a deodorizing granular activated carbon filter
    • Malhautier L, Degorce-Dumas JR, Degrange V, Bardin R, Le Cloirec P (1997) Serological determination of Nitrobacter species in a deodorizing granular activated carbon filter. Environ Technol 18:275-283
    • (1997) Environ Technol , vol.18 , pp. 275-283
    • Malhautier, L.1    Degorce-Dumas, J.R.2    Degrange, V.3    Bardin, R.4    Le Cloirec, P.5
  • 24
    • 0031877277 scopus 로고    scopus 로고
    • Estimating size and diversity of nitrifying communities in deodorizing filters using PCR and immunofluorescence
    • Malhautier L, Degrange V, Guay R, Degorce-Dumas JR, Bardin R, Le Cloirec P (1998) Estimating size and diversity of nitrifying communities in deodorizing filters using PCR and immunofluorescence. J Appl Microbiol 85:255-262
    • (1998) J Appl Microbiol , vol.85 , pp. 255-262
    • Malhautier, L.1    Degrange, V.2    Guay, R.3    Degorce-Dumas, J.R.4    Bardin, R.5    Le Cloirec, P.6
  • 25
    • 0029663630 scopus 로고    scopus 로고
    • Changes in Nitrobacter serotypes biodiversity in a river: Impact of a wastewater treatment plant discharge
    • Montuelle B, Volat B, Torio-Fernandez MM, Navarro E (1996) Changes in Nitrobacter serotypes biodiversity in a river: impact of a wastewater treatment plant discharge. Water Res 30:1057-1064
    • (1996) Water Res , vol.30 , pp. 1057-1064
    • Montuelle, B.1    Volat, B.2    Torio-Fernandez, M.M.3    Navarro, E.4
  • 26
    • 0026569655 scopus 로고
    • Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer
    • Navarro E, Simonet P, Normand P, Bardin R (1992) Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer. Arch Microbiol 157:107-115
    • (1992) Arch Microbiol , vol.157 , pp. 107-115
    • Navarro, E.1    Simonet, P.2    Normand, P.3    Bardin, R.4
  • 27
    • 0028364368 scopus 로고
    • Detection of Nitrosomonas spp. by polymerase chain reaction
    • Nejidat A, Abeliovich A (1994) Detection of Nitrosomonas spp. by polymerase chain reaction. FEMS Microbiol Lett 120:191-194
    • (1994) FEMS Microbiol Lett , vol.120 , pp. 191-194
    • Nejidat, A.1    Abeliovich, A.2
  • 28
    • 0026745065 scopus 로고
    • Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction
    • Picard C, Ponsonnet C, Paget E, Nesme X, Simonet P (1992) Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction. Appl Environ Microbiol 58:2717-2722
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2717-2722
    • Picard, C.1    Ponsonnet, C.2    Paget, E.3    Nesme, X.4    Simonet, P.5
  • 29
    • 0025803619 scopus 로고
    • Development of molecular methods for the detection of specific bacteria in the environment
    • Pickup RW (1991) Development of molecular methods for the detection of specific bacteria in the environment. J Gen Microbiol 137:1009-1019
    • (1991) J Gen Microbiol , vol.137 , pp. 1009-1019
    • Pickup, R.W.1
  • 31
    • 84986870589 scopus 로고
    • The use of DAPI for identifying and counting aquatic microflora
    • Porter KG, Feig YS (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 5:943-948
    • (1980) Limnol Oceanogr , vol.5 , pp. 943-948
    • Porter, K.G.1    Feig, Y.S.2
  • 32
    • 0027789994 scopus 로고
    • Numération bactérienne en épifluorescence par la méthode couplée DAPI-INT: Application á un cas concret
    • Rebillard JP, Torre M (1993) Numération bactérienne en épifluorescence par la méthode couplée DAPI-INT: application á un cas concret. Rev Sci Eau 6:153-174
    • (1993) Rev Sci Eau , vol.6 , pp. 153-174
    • Rebillard, J.P.1    Torre, M.2
  • 33
    • 0017521045 scopus 로고
    • Immunofluorescence studies of Nitrobacter populations in soils
    • Rennie RJ, Schmidt EL (1977) Immunofluorescence studies of Nitrobacter populations in soils. Can J Microbiol 23:1011-1017
    • (1977) Can J Microbiol , vol.23 , pp. 1011-1017
    • Rennie, R.J.1    Schmidt, E.L.2
  • 34
    • 0024385782 scopus 로고
    • Biphasic amplification of very dilute DNA samples via "booster" PCR
    • Ruano G, Fenton W, Kidd KK (1989) Biphasic amplification of very dilute DNA samples via "booster" PCR. Nucleic Acid Res 17:5407
    • (1989) Nucleic Acid Res , vol.17 , pp. 5407
    • Ruano, G.1    Fenton, W.2    Kidd, K.K.3
  • 35
    • 0028167606 scopus 로고
    • Quantification and characterisation of Nitrosomonas and Nitrobacter using monoclonal antibodies
    • Sandén B, Grunditz C, Hansson Y, Dalhammar G (1994) Quantification and characterisation of Nitrosomonas and Mtrobacter using monoclonal antibodies. Water Sci Technol 29: 1-6
    • (1994) Water Sci Technol , vol.29 , pp. 1-6
    • Sandén, B.1    Grunditz, C.2    Hansson, Y.3    Dalhammar, G.4
  • 37
    • 0028987509 scopus 로고
    • Modelling nitrification in the river Zarka of Jordan
    • Scott JA, Abumoghli I (1995) Modelling nitrification in the river Zarka of Jordan. Water Res 29:1121-1127
    • (1995) Water Res , vol.29 , pp. 1121-1127
    • Scott, J.A.1    Abumoghli, I.2
  • 38
    • 0019419003 scopus 로고
    • Serological diversity of Nitrobacter spp. from soil and aquatic habitats
    • Stanley PM, Schmidt EL (1981) Serological diversity of Nitrobacter spp. from soil and aquatic habitats. Appl Environ Microbiol 41:1069-1071
    • (1981) Appl Environ Microbiol , vol.41 , pp. 1069-1071
    • Stanley, P.M.1    Schmidt, E.L.2
  • 41
    • 0021967188 scopus 로고
    • Immunofluorescence for the quantitative determination of nitrifying bacteria: Interference of the test in biofilm reactors
    • Szwerinski H, Gaiser S, Bardtke D (1985) Immunofluorescence for the quantitative determination of nitrifying bacteria: interference of the test in biofilm reactors. Appl Microbiol Biotechnol 21:125-128
    • (1985) Appl Microbiol Biotechnol , vol.21 , pp. 125-128
    • Szwerinski, H.1    Gaiser, S.2    Bardtke, D.3
  • 42
    • 0027202733 scopus 로고
    • Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast
    • Tebbe CC, Vahjen W (1993) Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast. Appl Environ Microbiol 59:2657-2665
    • (1993) Appl Environ Microbiol , vol.59 , pp. 2657-2665
    • Tebbe, C.C.1    Vahjen, W.2
  • 43
    • 0001894963 scopus 로고
    • Isolation of bacterial DNA from soil
    • Torsvik VL (1980) Isolation of bacterial DNA from soil. Soil Biol Biochem 12:15-21
    • (1980) Soil Biol Biochem , vol.12 , pp. 15-21
    • Torsvik, V.L.1
  • 44
    • 0021890353 scopus 로고
    • Dénombrements directs des bactéries dans les milieux aquatiques par microscopie en épifluorescence: Distribution et précision des mesures
    • Trousselier M, Albat M, André P, Baleux B (1985) Dénombrements directs des bactéries dans les milieux aquatiques par microscopie en épifluorescence: distribution et précision des mesures. Rev Fr Sci Eau 4:35-49
    • (1985) Rev Fr Sci Eau , vol.4 , pp. 35-49
    • Trousselier, M.1    Albat, M.2    André, P.3    Baleux, B.4
  • 45
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai YL, Olson BH (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol 57:1070-1074
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1070-1074
    • Tsai, Y.L.1    Olson, B.H.2
  • 46
    • 0026708461 scopus 로고
    • Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction
    • Tsai YL, Olson BH (1992) Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl Environ Microbiol 58:2292-2295
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2292-2295
    • Tsai, Y.L.1    Olson, B.H.2
  • 47
    • 0030303004 scopus 로고    scopus 로고
    • Nitrification and denitrification: Probing the nitrogen cycle in aquatic environments
    • Ward BB (1996) Nitrification and denitrification: probing the nitrogen cycle in aquatic environments. Microb Ecol 32:247-261
    • (1996) Microb Ecol , vol.32 , pp. 247-261
    • Ward, B.B.1
  • 48
    • 0000517248 scopus 로고
    • Immunofluorescence detection of the denitrifying strain Pseudomonas stutzeri (ATCC 14405) in seawater and intertidal sediment environments
    • Ward BB, Cockroft AR (1993) Immunofluorescence detection of the denitrifying strain Pseudomonas stutzen (ATCC 14405) in seawater and intertidal sediment environments. Microb Ecol 25:233-246
    • (1993) Microb Ecol , vol.25 , pp. 233-246
    • Ward, B.B.1    Cockroft, A.R.2
  • 49
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson IG (1997) Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 63:3741-3751
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3741-3751
    • Wilson, I.G.1


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