메뉴 건너뛰기




Volumn 67, Issue 10, 2001, Pages 4554-4559

Numerical Analysis of Grassland Bacterial Community Structure under Different Land Management Regimens by Using 16S Ribosomal DNA Sequence Data and Denaturing Gradient Gel Electrophoresis Banding Patterns

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; RNA 16S;

EID: 0035487280     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.67.10.4554-4559.2001     Document Type: Article
Times cited : (244)

References (39)
  • 1
    • 0034666483 scopus 로고    scopus 로고
    • Cluster analysis, richness and biodiversity indexes derived from denaturing gradient gel electrophoresis fingerprints of bacterial communities demonstrate that traditional maize fermentations are driven by the transformation process
    • Ampe, F., and E. Miambi. 2000. Cluster analysis, richness and biodiversity indexes derived from denaturing gradient gel electrophoresis fingerprints of bacterial communities demonstrate that traditional maize fermentations are driven by the transformation process. Int. J. Food Microbiol. 60:91-97.
    • (2000) Int. J. Food Microbiol. , vol.60 , pp. 91-97
    • Ampe, F.1    Miambi, E.2
  • 2
    • 0033823404 scopus 로고    scopus 로고
    • Microbial community dynamics during production of the Mexican fermented maize dough pozol
    • ben Omar, N., and F. Ampe. 2000. Microbial community dynamics during production of the Mexican fermented maize dough pozol. Appl. Environ. Microbiol. 66:3664-3673.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3664-3673
    • Ben Omar, N.1    Ampe, F.2
  • 4
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman, J., and E. W. Triplett. 1997. Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63:2647-2653.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 5
    • 0030849809 scopus 로고    scopus 로고
    • Direct extraction of microbial community DNA from humified upland soils
    • Clegg, C. D., K. Ritz, and B. S. Griffiths. 1997. Direct extraction of microbial community DNA from humified upland soils. Lett. Appl. Microbiol. 25:30-33.
    • (1997) Lett. Appl. Microbiol. , vol.25 , pp. 30-33
    • Clegg, C.D.1    Ritz, K.2    Griffiths, B.S.3
  • 6
    • 0031959005 scopus 로고    scopus 로고
    • Broad-scale analysis of soil microbial community DNA from upland grasslands. Antonie van Leeuwenhoek
    • Clegg, C. D., K. Ritz, and B. S. Griffiths. 1998. Broad-scale analysis of soil microbial community DNA from upland grasslands. Antonie van Leeuwenhoek Int. J. Gen. Mol. Microbiol. 73:9-14.
    • (1998) Int. J. Gen. Mol. Microbiol. , vol.73 , pp. 9-14
    • Clegg, C.D.1    Ritz, K.2    Griffiths, B.S.3
  • 7
    • 0033932424 scopus 로고    scopus 로고
    • %G+C profiling and cross hybridisation of microbial DNA reveals great variation in below-ground community structure in UK upland grasslands
    • Clegg, C. D., K. Ritz, and B. S. Griffiths. 2000. %G+C profiling and cross hybridisation of microbial DNA reveals great variation in below-ground community structure in UK upland grasslands. Appl. Soil Ecol. 14:125-134.
    • (2000) Appl. Soil Ecol. , vol.14 , pp. 125-134
    • Clegg, C.D.1    Ritz, K.2    Griffiths, B.S.3
  • 8
    • 0035163562 scopus 로고    scopus 로고
    • Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments codine for 16S rRNA
    • Duineveld, B. M., G. A. Kowalchuk, A. Keijzer, J. D. van Elsas, and J. A. van Veen. 2001. Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments codine for 16S rRNA. Appl. Environ. Microbiol. 67:172-178.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 172-178
    • Duineveld, B.M.1    Kowalchuk, G.A.2    Keijzer, A.3    Van Elsas, J.D.4    Van Veen, J.A.5
  • 9
    • 0032938864 scopus 로고    scopus 로고
    • Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community
    • Eichner, C. A., R. W. Erb, K. N. Timmis, and I. Wagner-Dobler. 1999. Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl. Environ. Microbiol. 65:102-109.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 102-109
    • Eichner, C.A.1    Erb, R.W.2    Timmis, K.N.3    Wagner-Dobler, I.4
  • 10
    • 0033025914 scopus 로고    scopus 로고
    • Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles
    • El Fantroussi, S., L. Verschuere, W. Verstraete, and E. M. Top. 1999. Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles. Appl. Environ. Microbial. 65:982-988.
    • (1999) Appl. Environ. Microbial. , vol.65 , pp. 982-988
    • El Fantroussi, S.1    Verschuere, L.2    Verstraete, W.3    Top, E.M.4
  • 11
    • 0031732597 scopus 로고    scopus 로고
    • Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints
    • Felske, A., A. D. L. Akkermans, and W. M. De Vos. 1998. Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints. Appl. Environ. Microbiol. 64:4581-4587.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4581-4587
    • Felske, A.1    Akkermans, A.D.L.2    De Vos, W.M.3
  • 12
    • 0031909733 scopus 로고    scopus 로고
    • Phylogeny of the main bacterial 16S rRNA sequences in Drentse a grassland soils (the Netherlands)
    • Felske, A., A. Wolterink, R. Van Lis, and A. D. L. Akkermans. 1998. Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl. Environ. Microbiol. 64:871-879.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 871-879
    • Felske, A.1    Wolterink, A.2    Van Lis, R.3    Akkermans, A.D.L.4
  • 13
    • 0030739128 scopus 로고    scopus 로고
    • Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
    • Heuer, H., M. Krsek, P. Baker, K. Smalla, and E. M. H. Wellington. 1997. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63:3233-3241.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3233-3241
    • Heuer, H.1    Krsek, M.2    Baker, P.3    Smalla, K.4    Wellington, E.M.H.5
  • 14
    • 0033829008 scopus 로고    scopus 로고
    • Polyphasic microbial community analysis of petroleum hydrocarbon-contaminated soils from two northern Canadian communities
    • Juck, D., T. Charles, L. G. Whyte, and C. W. Greer. 2000. Polyphasic microbial community analysis of petroleum hydrocarbon-contaminated soils from two northern Canadian communities. FEMS Microbiol. Ecol. 33:241-249.
    • (2000) FEMS Microbiol. Ecol. , vol.33 , pp. 241-249
    • Juck, D.1    Charles, T.2    Whyte, L.G.3    Greer, C.W.4
  • 15
    • 0032784378 scopus 로고    scopus 로고
    • Diversity of soil Archaea in boreal forest before and after clear-cutting and prescribed burning
    • Jurgens, G., and A. Saano. 1999. Diversity of soil Archaea in boreal forest before and after clear-cutting and prescribed burning. FEMS Microbiol. Ecol. 29:205-213.
    • (1999) FEMS Microbiol. Ecol. , vol.29 , pp. 205-213
    • Jurgens, G.1    Saano, A.2
  • 16
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
    • Kowalchuk, G. A., J. R. Stephen, W. DeBoer, J. I. Prosser, T. M. Embley, and J. W. Woldendorp. 1997. Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ. Microbiol. 63:1489-1497.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    Deboer, W.3    Prosser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 17
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske, C. R., S. M. Barns, and J. D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614-3621.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 18
    • 0033831538 scopus 로고    scopus 로고
    • Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater
    • LaPara, T. M., C. H. Nakatsu, L. Pantea, and J. E. Alleman. 2000. Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater. Appl. Environ. Microbiol. 66:3951-3959.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3951-3959
    • LaPara, T.M.1    Nakatsu, C.H.2    Pantea, L.3    Alleman, J.E.4
  • 19
    • 0034382621 scopus 로고    scopus 로고
    • Development of molecular biological methods to analyze bacterial species diversity in freshwater and soil ecosystems
    • Lee, D. H., S. A. Noh, and C. K. Kim. 2000. Development of molecular biological methods to analyze bacterial species diversity in freshwater and soil ecosystems. J. Microbiol. 38:11-17.
    • (2000) J. Microbiol. , vol.38 , pp. 11-17
    • Lee, D.H.1    Noh, S.A.2    Kim, C.K.3
  • 20
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 21
    • 0031956351 scopus 로고    scopus 로고
    • Bacterial diversity in the bulk soil and rhizosphere fractions of Lolium perenne and Trifolium repens as revealed by PCR restriction analysis of 16S rDNA
    • Marilley, L., G. Vogt, M. Blanc, and M. Aragno. 1998. Bacterial diversity in the bulk soil and rhizosphere fractions of Lolium perenne and Trifolium repens as revealed by PCR restriction analysis of 16S rDNA. Plant Soil 198:219-224.
    • (1998) Plant Soil , vol.198 , pp. 219-224
    • Marilley, L.1    Vogt, G.2    Blanc, M.3    Aragno, M.4
  • 22
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of hacterial community structure and diversity in unimproved and improved upland grass pastures
    • McCaig, A. E., L. A. Glover, and J. I. Prosser. 1999. Molecular analysis of hacterial community structure and diversity in unimproved and improved upland grass pastures. Appl. Environ. Microbiol. 65:1721-1730.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1721-1730
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 23
    • 0035012466 scopus 로고    scopus 로고
    • Impact of cultivation on characterisation of species composition of soil bacterial communities
    • McCaig, A. E., S. J. Grayston, J. I. Prosser, and L. A. Glover. 2001 Impact of cultivation on characterisation of species composition of soil bacterial communities. FEMS Microbiol. Ecol. 35:37-48.
    • (2001) FEMS Microbiol. Ecol. , vol.35 , pp. 37-48
    • McCaig, A.E.1    Grayston, S.J.2    Prosser, J.I.3    Glover, L.A.4
  • 25
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA
    • Muyzer, G., E. C. Dewaal, and A. G. Uitterlinden. 1943. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA. Appl. Environ. Microbiol. 59:695-700.
    • (1943) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 26
    • 0034233490 scopus 로고    scopus 로고
    • Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products
    • Nakatsu, C. H., V. Torsvik, and L. Ovreas. 2000. Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products. Soil Sci. Soc. Am. J. 64:1382-1388.
    • (2000) Soil Sci. Soc. Am. J. , vol.64 , pp. 1382-1388
    • Nakatsu, C.H.1    Torsvik, V.2    Ovreas, L.3
  • 27
    • 0342868796 scopus 로고    scopus 로고
    • Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition
    • Nusslein, K., and J. M. Tiedje. 1998. Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition. Appl. Environ. Microbiol. 64:1283-1289.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1283-1289
    • Nusslein, K.1    Tiedje, J.M.2
  • 28
    • 0032412146 scopus 로고    scopus 로고
    • Microbial diversity and community structure in two different agricultural soil communities
    • Ovreas, L., and V. Torsvik. 1998. Microbial diversity and community structure in two different agricultural soil communities. Microb. Ecol. 36:303-315.
    • (1998) Microb. Ecol. , vol.36 , pp. 303-315
    • Ovreas, L.1    Torsvik, V.2
  • 29
    • 0009752612 scopus 로고
    • The measurement of diversity in different types of biological collections
    • Pielou, E. C. 1966. The measurement of diversity in different types of biological collections. J. Theor. Biol. 13:131-144.
    • (1966) J. Theor. Biol. , vol.13 , pp. 131-144
    • Pielou, E.C.1
  • 30
    • 0034126356 scopus 로고    scopus 로고
    • Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil
    • Ritchie, N. J., M. E. Schutter, R. P. Dick, and D. D. Myrold. 2000. Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil. Appl. Environ. Microbiol. 66:1668-1675.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1668-1675
    • Ritchie, N.J.1    Schutter, M.E.2    Dick, R.P.3    Myrold, D.D.4
  • 31
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
    • Schwieger, F., and C. C. Tebbe. 1998. A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl. Environ. Microbiol. 64:4870-4876.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 33
    • 33344464667 scopus 로고
    • Measurement of diversity
    • Simpson, E. H. 1949. Measurement of diversity. Nature 163:688.
    • (1949) Nature , vol.163 , pp. 688
    • Simpson, E.H.1
  • 34
    • 0030805071 scopus 로고    scopus 로고
    • Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis
    • Smit, E., P. Leeflang, and K. Wernars. 1997. Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis. FEMS Microbial. Ecol. 23:249-261.
    • (1997) FEMS Microbial. Ecol. , vol.23 , pp. 249-261
    • Smit, E.1    Leeflang, P.2    Wernars, K.3
  • 35
    • 0029805297 scopus 로고    scopus 로고
    • Molecular diversity of soil and marine 16S rRNA gene sequences related to beta-subgroup ammonia-oxidizing bacteria
    • Stephen, J. R., A. E. McCaig, Z. Smith, J. I. Prosser, and T. M. Embley. 1996. Molecular diversity of soil and marine 16S rRNA gene sequences related to beta-subgroup ammonia-oxidizing bacteria. Appl. Environ. Microbiol. 62: 4147-4154.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4147-4154
    • Stephen, J.R.1    McCaig, A.E.2    Smith, Z.3    Prosser, J.I.4    Embley, T.M.5
  • 36
    • 0031904158 scopus 로고    scopus 로고
    • Analysis of beta-subgroup protcobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
    • Stephen, J. R., G. A. Kowalchuk, M. A. V. Bruns, A. E. McCaig, C. J. Phillips, T. M. Embley, and J. I. Prosser. 1998. Analysis of beta-subgroup protcobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl. Environ. Microbiol. 64:2958-2965.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2958-2965
    • Stephen, J.R.1    Kowalchuk, G.A.2    Bruns, M.A.V.3    McCaig, A.E.4    Phillips, C.J.5    Embley, T.M.6    Prosser, J.I.7
  • 38
    • 0033987792 scopus 로고    scopus 로고
    • Rhizosphere microbial community structure in relation to root location and plant iron nutritional status
    • Yang, C. H., and D. E. Crowley. 2000. Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl. Environ. Microbiol. 66:345-351.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 345-351
    • Yang, C.H.1    Crowley, D.E.2
  • 39
    • 0031436948 scopus 로고    scopus 로고
    • Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
    • Zhou, J. Z., M. E. Davey, J. B. Figueras, E. Rivkina, D. Gilichinsky, and J. M. Tiedje. 1997. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology 143:3913-3919.
    • (1997) Microbiology , vol.143 , pp. 3913-3919
    • Zhou, J.Z.1    Davey, M.E.2    Figueras, J.B.3    Rivkina, E.4    Gilichinsky, D.5    Tiedje, J.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.