메뉴 건너뛰기




Volumn 62, Issue 12, 1996, Pages 4641-4647

Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; ION; NITRITE; OLIGONUCLEOTIDE; OXYGEN; RIBOSOME RNA; WATER;

EID: 0029659250     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.62.12.4641-4647.1996     Document Type: Article
Times cited : (310)

References (53)
  • 1
    • 0023150649 scopus 로고
    • Nitrifying bacteria in wastewater reservoirs
    • Abeliovich, A. 1987. Nitrifying bacteria in wastewater reservoirs. Appl. Environ. Microbiol. 53:754-760.
    • (1987) Appl. Environ. Microbiol. , vol.53 , pp. 754-760
    • Abeliovich, A.1
  • 2
    • 0026532736 scopus 로고
    • Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms
    • Amann, R. I., J. Stromley, R. Devereux, R. Key, and D. A. Stahl. 1992. Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms. Appl. Environ. Microbiol. 58:614-623.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 614-623
    • Amann, R.I.1    Stromley, J.2    Devereux, R.3    Key, R.4    Stahl, D.A.5
  • 3
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann, R. I., L. Krumholz, and D. A. Stahl. 1990. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172:762-770.
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 4
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K.-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 5
    • 0018401930 scopus 로고
    • Population ecology of nitrifying bacteria
    • Belser, I. W. 1979. Population ecology of nitrifying bacteria. Annu. Rev. Microbiol. 33:309-333.
    • (1979) Annu. Rev. Microbiol. , vol.33 , pp. 309-333
    • Belser, I.W.1
  • 6
    • 0018172981 scopus 로고
    • Serological diversity within a terrestrial ammonia-oxidizing population
    • Belser, L. W., and E. L. Schmidt. 1978. Serological diversity within a terrestrial ammonia-oxidizing population. Appl. Environ. Microbiol. 36:589-593.
    • (1978) Appl. Environ. Microbiol. , vol.36 , pp. 589-593
    • Belser, L.W.1    Schmidt, E.L.2
  • 7
    • 0000407465 scopus 로고
    • The genus Nitrobacter and related genera
    • A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), Springer-Verlag, New York
    • Bock, E., and H.-P. Koops. 1992. The genus Nitrobacter and related genera, p. 2302-2309. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes, 2nd ed. Springer-Verlag, New York.
    • (1992) The Prokaryotes, 2nd Ed. , pp. 2302-2309
    • Bock, E.1    Koops, H.-P.2
  • 8
    • 0025190920 scopus 로고
    • A new facultatively nitrite oxidizing bacterium, Nitrobacter vulgaris sp. nov
    • Bock, E., H.-P. Koops, U. C. Möller, and M. Rudert. 1990. A new facultatively nitrite oxidizing bacterium, Nitrobacter vulgaris sp. nov. Arch. Microbiol. 153:105-110.
    • (1990) Arch. Microbiol. , vol.153 , pp. 105-110
    • Bock, E.1    Koops, H.-P.2    Möller, U.C.3    Rudert, M.4
  • 9
    • 0028842086 scopus 로고
    • Nitrogen loss caused by denitrifying Nitrosomonas cells using ammonium or hydrogen as electron donors and nitrite as electron acceptor
    • Bock, E., I. Schmidt, R. Stüven, and D. Zart. 1995. Nitrogen loss caused by denitrifying Nitrosomonas cells using ammonium or hydrogen as electron donors and nitrite as electron acceptor. Arch. Microbiol. 163:16-20.
    • (1995) Arch. Microbiol. , vol.163 , pp. 16-20
    • Bock, E.1    Schmidt, I.2    Stüven, R.3    Zart, D.4
  • 10
    • 0000189612 scopus 로고
    • A salicylate-hypochlorite method for determining ammonia in seawater
    • Bower, C. E., and T. Holm-Hansen. 1980. A salicylate-hypochlorite method for determining ammonia in seawater. Can. J. Fish. Aquat. Sci. 37:794-798.
    • (1980) Can. J. Fish. Aquat. Sci. , vol.37 , pp. 794-798
    • Bower, C.E.1    Holm-Hansen, T.2
  • 11
    • 0003068174 scopus 로고
    • Gas exchange rates between air and sea
    • Broecker, W. S., and T.-H. Peng. 1974. Gas exchange rates between air and sea. Tellus 26:21-35.
    • (1974) Tellus , vol.26 , pp. 21-35
    • Broecker, W.S.1    Peng, T.-H.2
  • 12
    • 0026757442 scopus 로고
    • Regulating factors of denitrification in trickling filter biofilms as measured with the oxygen/nitrous oxide microsensor
    • Dalsgaard, T., and N. P. Revsbech. 1992. Regulating factors of denitrification in trickling filter biofilms as measured with the oxygen/nitrous oxide microsensor. FEMS Microbiol. Ecol. 101:151-164.
    • (1992) FEMS Microbiol. Ecol. , vol.101 , pp. 151-164
    • Dalsgaard, T.1    Revsbech, N.P.2
  • 13
  • 14
    • 0002092217 scopus 로고
    • Measurement of nitrate gradients with an ion-selective microelectrode
    • DeBeer, D., and J.-P. R. A. Sweerts. 1989. Measurement of nitrate gradients with an ion-selective microelectrode. Anal. Chim. Acta 219:351-356.
    • (1989) Anal. Chim. Acta , vol.219 , pp. 351-356
    • DeBeer, D.1    Sweerts, J.-P.R.A.2
  • 15
    • 0001228308 scopus 로고
    • Response of ammonium-selective microelectrodes based on the neutral carrier nonactin
    • DeBeer, D., and J. C. van den Heuvel. 1988. Response of ammonium-selective microelectrodes based on the neutral carrier nonactin. Talanta 35: 728-730.
    • (1988) Talanta , vol.35 , pp. 728-730
    • DeBeer, D.1    Van Den Heuvel, J.C.2
  • 16
    • 0029549236 scopus 로고
    • Relation between the structure of an aerobic biofilm and transport phenomena
    • DeBeer, D., and P. Stoodley. 1995. Relation between the structure of an aerobic biofilm and transport phenomena. Water Sci. Technol. 32:11-18.
    • (1995) Water Sci. Technol. , vol.32 , pp. 11-18
    • DeBeer, D.1    Stoodley, P.2
  • 17
    • 0027476683 scopus 로고
    • Microelectrode measurements of the activity distribution in nitrifying bacterial aggregates
    • DeBeer, D., J. C. van den Heuvel, and S. P. P. Ottengraf. 1993. Microelectrode measurements of the activity distribution in nitrifying bacterial aggregates. Appl. Environ. Microbiol. 59:573-579.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 573-579
    • DeBeer, D.1    Van Den Heuvel, J.C.2    Ottengraf, S.P.P.3
  • 18
    • 0026737761 scopus 로고
    • Ribosomes exist in large excess over the apparent demand for protein synthesis during carbon starvation in marine Vibrio sp. Strain CCUG 15956
    • Flärdh, K., P. S. Cohen, and S. Kjelleberg. 1992. Ribosomes exist in large excess over the apparent demand for protein synthesis during carbon starvation in marine Vibrio sp. Strain CCUG 15956. J. Bacteriol. 174:6780-6788.
    • (1992) J. Bacteriol. , vol.174 , pp. 6780-6788
    • Flärdh, K.1    Cohen, P.S.2    Kjelleberg, S.3
  • 19
    • 0001349433 scopus 로고
    • Biochemical ecology of nitrification and denitrification
    • Focht, D. D., and W. Verstraete. 1977. Biochemical ecology of nitrification and denitrification. Adv. Microbiol. Ecol. 1:135-214.
    • (1977) Adv. Microbiol. Ecol. , vol.1 , pp. 135-214
    • Focht, D.D.1    Verstraete, W.2
  • 20
    • 38249033095 scopus 로고
    • Growth of Nitrobacter by dissimilatory nitrate reduction
    • Freitag, A., M. Rudert, and E. Bock. 1987. Growth of Nitrobacter by dissimilatory nitrate reduction. FEMS Microbiol. Lett. 14:105-109.
    • (1987) FEMS Microbiol. Lett. , vol.14 , pp. 105-109
    • Freitag, A.1    Rudert, M.2    Bock, E.3
  • 21
    • 0028159777 scopus 로고
    • Effects on the benthic diffusive boundary layer imposed by microelectrodes
    • Glud, R. N., J. K. Gundersen, N. P. Revsbech, and B. B. Jørgensen. 1994. Effects on the benthic diffusive boundary layer imposed by microelectrodes. Limnol. Oceanogr. 39:462-467.
    • (1994) Limnol. Oceanogr. , vol.39 , pp. 462-467
    • Glud, R.N.1    Gundersen, J.K.2    Revsbech, N.P.3    Jørgensen, B.B.4
  • 23
    • 0002749990 scopus 로고
    • Measurement of nitrification rates in lake sediments: Comparison of the nitrification inhibitors nitrapyrin and allylthiourea
    • Hall, G. H. 1984. Measurement of nitrification rates in lake sediments: comparison of the nitrification inhibitors nitrapyrin and allylthiourea. Microb. Ecol. 10:25-36.
    • (1984) Microb. Ecol. , vol.10 , pp. 25-36
    • Hall, G.H.1
  • 24
    • 0027338563 scopus 로고
    • Microscale distribution of nitrification activity in sediment determined with a shielded microsensor for nitrate
    • Jensen, K., N. P. Revsbech, and L. P. Nielsen. 1993. Microscale distribution of nitrification activity in sediment determined with a shielded microsensor for nitrate. Appl. Environ. Microbiol. 59:3287-3296.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3287-3296
    • Jensen, K.1    Revsbech, N.P.2    Nielsen, L.P.3
  • 25
    • 0028184191 scopus 로고
    • Estimation of nitrification and denitrification from microprofiles of oxygen and nitrate in model sediment systems
    • Jensen, K., N. P. Sloth, N. Risgaard-Petersen, S. Rysgaard, and N. P. Revsbech. 1994. Estimation of nitrification and denitrification from microprofiles of oxygen and nitrate in model sediment systems. Appl. Environ. Microbiol. 60:2094-2100.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2094-2100
    • Jensen, K.1    Sloth, N.P.2    Risgaard-Petersen, N.3    Rysgaard, S.4    Revsbech, N.P.5
  • 26
    • 84988159353 scopus 로고
    • Diffusive boundary layers and the oxygen uptake of sediment and detritus
    • Jørgensen, B. B., and N. P. Revsbech. 1985. Diffusive boundary layers and the oxygen uptake of sediment and detritus. Limnol. Oceanogr. 30:11-21.
    • (1985) Limnol. Oceanogr. , vol.30 , pp. 11-21
    • Jørgensen, B.B.1    Revsbech, N.P.2
  • 28
    • 0025768249 scopus 로고
    • Classification of eight new species of ammonia-oxidizing bacteria: Nitrosomonas communis sp. nov., Nitrosomonas urea sp. nov., Nitrosomonas aestuarii sp. nov., Nitrosomonas marina sp. nov., Nitrosomonas nitrosa sp. nov., Nitrosomonas eutropha sp. nov., Nitrosomonas oligotropha sp. nov., Nitrosomonas halophila sp. nov
    • Koops, H.-P., B. Böttcher, U. C. Möller, A. Pommerening-Röser, and G. Stehr. 1991. Classification of eight new species of ammonia-oxidizing bacteria: Nitrosomonas communis sp. nov., Nitrosomonas urea sp. nov., Nitrosomonas aestuarii sp. nov., Nitrosomonas marina sp. nov., Nitrosomonas nitrosa sp. nov., Nitrosomonas eutropha sp. nov., Nitrosomonas oligotropha sp. nov., Nitrosomonas halophila sp. nov. J. Gen. Microbiol. 137:1689-1699.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 1689-1699
    • Koops, H.-P.1    Böttcher, B.2    Möller, U.C.3    Pommerening-Röser, A.4    Stehr, G.5
  • 29
    • 0000398389 scopus 로고
    • The lithotrophic ammonia-oxidizing bacteria
    • A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), Springer-Verlag, New York
    • Koops, H.-P., and U. C. Möller. 1992. The lithotrophic ammonia-oxidizing bacteria. p. 2625-2637. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes, 2nd ed. Springer-Verlag, New York.
    • (1992) The Prokaryotes, 2nd Ed. , pp. 2625-2637
    • Koops, H.-P.1    Möller, U.C.2
  • 30
    • 0028113024 scopus 로고
    • Combined nitrification-denitrification processes
    • Kuenen, J. G., and L. A. Robertson. 1994. Combined nitrification-denitrification processes. FEMS Microbiol. Rev. 15:109-117.
    • (1994) FEMS Microbiol. Rev. , vol.15 , pp. 109-117
    • Kuenen, J.G.1    Robertson, L.A.2
  • 31
    • 0029885690 scopus 로고    scopus 로고
    • A microsensor for nitrate based on immobilized denitrifying bacteria
    • Larsen, L. H., N. P. Revsbech, and S. J. Binnerup. 1996. A microsensor for nitrate based on immobilized denitrifying bacteria. Appl. Environ. Microbiol. 62:1248-1251.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1248-1251
    • Larsen, L.H.1    Revsbech, N.P.2    Binnerup, S.J.3
  • 32
    • 49549157667 scopus 로고
    • Diffusion of ions in sea water and in deep-sea sediments
    • Li, Y.-H., and S. Gregory. 1974. Diffusion of ions in sea water and in deep-sea sediments. Geochim. Cosmochim. Acta 38:703-714.
    • (1974) Geochim. Cosmochim. Acta , vol.38 , pp. 703-714
    • Li, Y.-H.1    Gregory, S.2
  • 33
    • 0002426854 scopus 로고
    • Nitrification in soil: An introductory history
    • Macdonald, R. M. 1986. Nitrification in soil: an introductory history. Spec. Publ. Soc. Gen. Microbiol. 20:1-16.
    • (1986) Spec. Publ. Soc. Gen. Microbiol. , vol.20 , pp. 1-16
    • Macdonald, R.M.1
  • 34
    • 0027068041 scopus 로고
    • Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
    • Manz, W., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1992. Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15:593-600.
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5
  • 35
    • 0027313070 scopus 로고
    • In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes
    • Manz, W., U. Szewzyk, P. Eriksson, R. Amann, K.-H. Schleifer, and T. A. Stenström. 1993. In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes. Appl. Environ. Microbiol. 59:2293-2298.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2293-2298
    • Manz, W.1    Szewzyk, U.2    Eriksson, P.3    Amann, R.4    Schleifer, K.-H.5    Stenström, T.A.6
  • 36
    • 0025330398 scopus 로고
    • Denitrification and oxygen respiration in biofilms studied with a microsensor for nitrous oxide and oxygen
    • Nielsen, L. P., P. B. Christensen, N. P. Revsbech, and J. Sørensen. 1990. Denitrification and oxygen respiration in biofilms studied with a microsensor for nitrous oxide and oxygen. Microb. Ecol. 19:63-72.
    • (1990) Microb. Ecol. , vol.19 , pp. 63-72
    • Nielsen, L.P.1    Christensen, P.B.2    Revsbech, N.P.3    Sørensen, J.4
  • 37
    • 0028163462 scopus 로고
    • 15N determination of coupled nitrification-denitrification associated with organic hot-spots in soil
    • 15N determination of coupled nitrification-denitrification associated with organic hot-spots in soil. Soil Sci. Soc. Am. J. 58:795-800.
    • (1994) Soil Sci. Soc. Am. J. , vol.58 , pp. 795-800
    • Nielsen, T.H.1    Revsbech, N.P.2
  • 38
    • 0000751498 scopus 로고
    • Nitrification in the treatment of sewage and wastewaters
    • Painter, H. A. 1986. Nitrification in the treatment of sewage and wastewaters. Spec. Publ. Soc. Gen. Microbiol. 20:185-213.
    • (1986) Spec. Publ. Soc. Gen. Microbiol. , vol.20 , pp. 185-213
    • Painter, H.A.1
  • 39
    • 0022455018 scopus 로고
    • Dinitrogen production from nitrite by a Nitrosomonas isolate
    • Poth, M. 1986. Dinitrogen production from nitrite by a Nitrosomonas isolate. Appl. Environ. Microbiol. 52:957-959.
    • (1986) Appl. Environ. Microbiol. , vol.52 , pp. 957-959
    • Poth, M.1
  • 40
    • 0004126930 scopus 로고
    • Society for General Microbiology, Oxford
    • Prosser, J. I. (ed.) 1986. Nitrification. Society for General Microbiology, Oxford.
    • (1986) Nitrification
    • Prosser, J.I.1
  • 41
    • 0027375701 scopus 로고
    • 2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes
    • 2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes. Appl. Environ. Microbiol. 59: 3840-3849.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3840-3849
    • Ramsing, N.B.1    Kühl, M.2    Jørgensen, B.B.3
  • 42
    • 84986767568 scopus 로고
    • An oxygen microelectrode with a guard cathode
    • Revsbech, N. P. 1989. An oxygen microelectrode with a guard cathode. Limnol. Oceanogr. 34:474-478.
    • (1989) Limnol. Oceanogr. , vol.34 , pp. 474-478
    • Revsbech, N.P.1
  • 43
    • 0003090447 scopus 로고
    • Analysis of microbial mats by use of electrochemical microsensors: Recent advances
    • L. J. Stal and P. Caumette (ed.), Springer, New York
    • Revsbech, N. P. 1994. Analysis of microbial mats by use of electrochemical microsensors: recent advances, p. 149-163 In L. J. Stal and P. Caumette (ed.), Microbial mats: structure, development, and environmental significance. Springer, New York.
    • (1994) Microbial Mats: Structure, Development, and Environmental Significance , pp. 149-163
    • Revsbech, N.P.1
  • 44
    • 0024705208 scopus 로고
    • Denitrification in a trickling filter biofilm studied by a microsensor for oxygen and nitrous oxide
    • Revsbech, N. P., P. B. Christensen, L. P. Nielsen, and J. Sørensen. 1989. Denitrification in a trickling filter biofilm studied by a microsensor for oxygen and nitrous oxide. Water Res. 23:867-871.
    • (1989) Water Res. , vol.23 , pp. 867-871
    • Revsbech, N.P.1    Christensen, P.B.2    Nielsen, L.P.3    Sørensen, J.4
  • 45
    • 0000224938 scopus 로고
    • Microelectrodes: Their use in microbial ecology
    • Revsbech, N. P., and B. B. Jørgensen. 1986. Microelectrodes: their use in microbial ecology. Adv. Microb. Ecol. 9:293-352.
    • (1986) Adv. Microb. Ecol. , vol.9 , pp. 293-352
    • Revsbech, N.P.1    Jørgensen, B.B.2
  • 47
    • 0000275832 scopus 로고
    • A practical handbook of seawater analysis
    • Fisheries Research Board of Canada, Ottawa
    • Strickland, J. D. H., and T. R. Parson. 1972. A practical handbook of seawater analysis. Bulletin 167. Fisheries Research Board of Canada, Ottawa.
    • (1972) Bulletin 167
    • Strickland, J.D.H.1    Parson, T.R.2
  • 48
    • 0021967188 scopus 로고
    • Immunofluorescence for the quantitative determination of nitrifying bacteria: Interference of the test in biofilm reactors
    • Swerinski, H., S. Gaiser, and D. Bardtke. 1985. Immunofluorescence for the quantitative determination of nitrifying bacteria: interference of the test in biofilm reactors. Appl. Microbiol. Biotechnol. 21:125-128.
    • (1985) Appl. Microbiol. Biotechnol. , vol.21 , pp. 125-128
    • Swerinski, H.1    Gaiser, S.2    Bardtke, D.3
  • 49
    • 0003937034 scopus 로고
    • Rapid spectrophotometric determination of nitrate in mineral waters with resorcinol
    • Velghe, N., and A. Claeys. 1985. Rapid spectrophotometric determination of nitrate in mineral waters with resorcinol. Analyst 110:313-314.
    • (1985) Analyst , vol.110 , pp. 313-314
    • Velghe, N.1    Claeys, A.2
  • 50
    • 0028569160 scopus 로고
    • In situ analysis of microbial consortia in activated sludge using fluorescently labeled, rRNA-targeted oligonucleotide probes and confocal scanning laser microscopy
    • Wagner, M., B. Aßmus, A. Hartmann, P. Hutzler, and R. Amann. 1994. In situ analysis of microbial consortia in activated sludge using fluorescently labeled, rRNA-targeted oligonucleotide probes and confocal scanning laser microscopy. J. Microscopy 176:181-187.
    • (1994) J. Microscopy , vol.176 , pp. 181-187
    • Wagner, M.1    Aßmus, B.2    Hartmann, A.3    Hutzler, P.4    Amann, R.5
  • 52
    • 0029825018 scopus 로고    scopus 로고
    • In situ analysis of nitrifying bacteria in sewage treatment plants
    • Wagner, M., G. Rath, H.-P. Koops, J. Flood, and R. Amann. 1996. In situ analysis of nitrifying bacteria in sewage treatment plants. Water Sci. Tech. 34:237-244.
    • (1996) Water Sci. Tech. , vol.34 , pp. 237-244
    • Wagner, M.1    Rath, G.2    Koops, H.-P.3    Flood, J.4    Amann, R.5
  • 53
    • 0018843659 scopus 로고
    • Nitrous oxide solubility in water and seawater
    • Weiss, R. F., and B. A. Price. 1980. Nitrous oxide solubility in water and seawater. Mar. Chem. 8:347-359.
    • (1980) Mar. Chem. , vol.8 , pp. 347-359
    • Weiss, R.F.1    Price, B.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.