Reciprocal expression of lin-41 and the microRNAs let-7 and mir-125 during mouse embryogenesis

Developmental Dynamics

Volumn 234, Issue 4, 2005, Pages 1046-1054

  Schulman, Betsy R Maller ^a   Esquela Kerscher, Aurora ^a   Slack, Frank J ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

Developmental timing; Expression pattern; Heterochronic gene; let 7; Limb development; lin 41; MicroRnas; mir 125; Mouse embryogenesis

Indexed keywords

MICRORNA;

3' UNTRANSLATED REGION; ARTICLE; CAENORHABDITIS ELEGANS; CELL FATE; DEVELOPMENT; EMBRYO; EMBRYO DEVELOPMENT; GENE; GENE CONTROL; GENE SEQUENCE; GENETIC CONSERVATION; HUMAN; LET 7 GENE; LIMB BUD; LIMB DEVELOPMENT; LIN 41 GENE; MAMMAL; MIR 125 GENE; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; BASE PAIRING; BASE SEQUENCE; BINDING SITES; BLOTTING, NORTHERN; CLONING, MOLECULAR; CONSERVED SEQUENCE; DNA PRIMERS; EMBRYO; EXTREMITIES; GENE COMPONENTS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; IN SITU HYBRIDIZATION; MICE; MICRORNAS; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

CAENORHABDITIS ELEGANS; MAMMALIA;

EID: 28444475503     PISSN: 10588388     EISSN: None     Source Type: Journal    
DOI: 10.1002/dvdy.20599     Document Type: Article

References (47)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
2. Ambros V, Horvitz HR. 1984. Heterochronic mutants of the nematode Caenorhabditis elegans. Science 226:409-416.
3. Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T. 2003. The small RNA profile during Drosophila melanogaster development. Dev Cell 5: 337-350.
4. Avela K, Lipsanen-Nyman M, Idanheimo N, Seemanova E, Rosengren S, Makela TP, Perheentupa J, Chapelle AD, Lehesjoki AE. 2000. Gene encoding a new RING-B-box-Coiled-coil protein is mutated in mulibrey nanism. Nat Genet 25: 298-301.
5. Bagga S, Bracht J, Hunter S, Massirer K, Holtz J, Eachus R, Pasquinelli AE. 2005. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell 122:553-563.
6. Bao N, Lye KW, Barton MK. 2004. MicroRNA binding sites in arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. Dev Cell 7:653-662.
7. Bartel DP. 2004. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281-297.
8. Bashirullah A, Pasquinelli AE, Kiger AA, Perrimon N, Ruvkun G, Thummel CS. 2003. Coordinate regulation of small temporal RNAs at the onset of Drosophila metamorphosis. Dev Biol 259:1-8.
9. Borden KL, Boddy MN, Lally J, O'Reilly NJ, Martin S, Howe K, Solomon E, Freemont PS. 1995. The solution structure of the RING finger domain from the acute promyelocytic leukaemia proto-oncoprotein PML. Embo J 14:1532-1541.
10. Chalfie M, Horvitz HR, Sulston JE. 1981. Mutations that lead to reiterations in the cell lineages of C. elegans. Cell 24:59-69.
11. Dudley AT, Ros MA, Tabin CJ. 2002. A re-examination of proximodistal patterning during vertebrate limb development. Nature 418:539-544.
12. El-Husseini AE, Vincent SR. 1999. Cloning and characterization of a novel RING finger protein that interacts with class V myosins. J Biol Chem 274:19771-19777.
13. Feinbaum R, Ambros V. 1999. The timing of lin-4 RNA accumulation controls the timing of postembryonic developmental events in Caenorhabditis elegans. Dev Biol 210:87-95.
14. Freemont PS. 1993. The RING finger. A novel protein sequence motif related to the zinc finger. Ann NY Acad Sci 684: 174-192.
15. Ha I, Wightman B, Ruvkun G. 1996. A bulged lin-4/lin-14 RNA duplex is sufficient for Caenorhabditis elegans lin-14 temporal gradient formation. Genes Dev 10:3041-3050.
16. Jing Q, Huang S, Guth S, Zarubin T, Motoyama A, Chen J, Di Padova F, Lin SC, Gram H, Han J. 2005. Involvement of microRNA in AU-rich element-mediated mRNA instability. Cell 120:623-634.
17. Johnson SM, Lin SY, Slack FJ. 2003. The time of appearance of the C. elegans let-7 microRNA is transcriptionally controlled utilizing a temporal regulatory element in its promoter. Dev Biol 259:364-379.
18. Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T. 2002. Identification of tissue-specific microRNAs from mouse. Curr Biol 12:735-739.
19. Lee RC, Feinbaum RL, Ambros V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75:843-854.
20. Lee Y, Ahn C, Han J, Choi H, Kim J, Yim J, Lee J, Provost P, Radmark O, Kim S, Kim VN. 2003. The nuclear RNase III Drosha initiates microRNA processing. Nature 425:415-419.
21. Lee Y, Jeon K, Lee JT, Kim S, Kim VN. 2002. MicroRNA maturation: stepwise processing and subcellular localization. Embo J 21:4663-4670.
22. Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP. 2003. The microRNAs of Caenorhabditis elegans. Genes Dev 17: 991-1008.
23. Lin SY, Johnson SM, Abraham M, Vella MC, Pasquinelli A, Gamberi C, Gottlieb E, Slack FJ. 2003. The C. elegans hunch-back homolog, hbl-1, controls temporal patterning and is a probable microRNA target. Dev Cell 4:639-650.
24. Llave C, Kasschau KD, Rector MA, Carrington JC. 2002. Endogenous and silencing-associated small RNAs in plants. Plant Cell 14:1605-1619.
25. Lund E, Guttinger S, Calado A, Dahlberg JE, Kutay U. 2004. Nuclear export of microRNA precursors. Science 303:95-98.
26. Mansfield JH, Harfe BD, Nissen R, Obenauer J, Srineel J, Chaudhuri A, Farzan-Kashani R, Zuker M, Pasquinelli AE, Ruvkun G, Sharp PA, Tabin CJ, McManus MT. 2004. MicroRNA-responsive "sensor" transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression. Nat Genet 36:1079-1083.
27. Moss EG, Lee RC, Ambros V. 1997. The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA. Cell 88:637-646.
28. Moss EG, Tang L. 2003. Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites. Dev Biol 258:432-442.
29. Ohkawa N, Kokura K, Matsu-Ura T, Obinata T, Konishi Y, Tamura TA. 2001. Molecular cloning and characterization of neural activity-related RING finger protein (NARF): a new member of the RBCC family is a candidate for the partner of myosin V. J Neurochem 78:75-87.
30. Olsen PH, Ambros V. 1999. The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. Dev Biol 216: 671-680.
31. Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, Maller B, Hayward DC, Ball EE, Degnan B, Muller P, Spring J, Srinivasan A, Fishman M, Finnerty J, Corbo J, Levine M, Leahy P, Davidson E, Ruvkun G. 2000. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 408:86-89.
32. Pillai RS, Bhattacharyya SN, Artus CG, Zoller T, Cougot N, Basyuk E, Bertrand E, Filipowicz W. 2005. Inhibition of translational initiation by let-7 MicroRNA in human cells. Science 309:1573-1576.
33. Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, Rougvie AE, Horvitz HR, Ruvkun G. 2000. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403:901-906.
34. Reymond A, Meroni G, Fantozzi A, Merla G, Cairo S, Luzi L, Riganelli D, Zanaria E, Messali S, Cainarca S, Guffanti A, Minucci S, Pelicci PG, Ballabio A. 2001. The tripartite motif family identifies cell compartments. Embo J 20:2140-2151.
35. Saurin AJ, Borden KL, Boddy MN, Freemont PS. 1996. Does this have a familiar RING? Trends Biochem Sci 21:208-214.
36. Sempere LF, Freemantle S, Pitha-Rowe I, Moss E, Dmitrovsky E, Ambros V. 2004. Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation. Genome Biol 5:R13.
37. Slack FJ, Basson M, Liu Z, Ambros V, Horvitz HR, Ruvkun G. 2000. The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor. Mol Cell 5:659-669.
38. Slack FJ, Ruvkun G. 1998. A novel repeat domain that is often associated with RING finger and B-box motifs. Trends Biochem Sci 23:474-475.
39. Sonoda J, Wharton RP. 2001. Drosophila brain tumor is a translational repressor. Genes Dev 15:762-773.
40. Summerbell D, Lewis JH, Wolpert L. 1973. Positional information in chick limb morphogenesis. Nature 244:492-496.
41. Sun X, Mariani FV, Martin GR. 2002. Functions of FGF signalling from the apical ectodermal ridge in limb development. Nature 418:501-508.
42. Tickle C. 2003. Patterning systems: from one end of the limb to the other. Dev Cell 4:449-458.
43. Vella MC, Choi EY, Lin SY, Reinert K, Slack FJ. 2004a. The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3′UTR. Genes Dev 18:132-137.
44. Vella MC, Reinert K, Slack FJ. 2004b. Architecture of a validated microRNA:target interaction. Chem Biol 11:1619-1623.
45. Wightman B, Ha I, Ruvkun G. 1993. Post-transcriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 75:855-862.
46. Yekta S, Shih IH, Bartel DP. 2004. MicroRNA-directed cleavage of HOXB8 mRNA. Science 304:594-596.
47. Yi R, Qin Y, Macara IG, Cullen BR. 2003. Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev 17:3011-3016.