-
1
-
-
0035943341
-
Isolation and characterization of sigma(70)-retaining transcription elongation complexes from Escherichia coli
-
G. Bar-Nahum, and E. Nudler Isolation and characterization of sigma(70)-retaining transcription elongation complexes from Escherichia coli Cell 106 2001 443 451
-
(2001)
Cell
, vol.106
, pp. 443-451
-
-
Bar-Nahum, G.1
Nudler, E.2
-
2
-
-
0036840677
-
Role of the RNA polymerase sigma subunit in transcription intitiation
-
S. Borukhov, and K. Severinov Role of the RNA polymerase sigma subunit in transcription intitiation Res. Microbiol. 153 2002 557 562
-
(2002)
Res. Microbiol.
, vol.153
, pp. 557-562
-
-
Borukhov, S.1
Severinov, K.2
-
3
-
-
2542456496
-
The sigma 70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription
-
K. Brodolin, N. Zenkin, A. Mustaev, D. Mamaeva, and H. Heumann The sigma 70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription Nat. Struct. Mol. Biol. 11 2004 551 557
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 551-557
-
-
Brodolin, K.1
Zenkin, N.2
Mustaev, A.3
Mamaeva, D.4
Heumann, H.5
-
4
-
-
0022247421
-
Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation, and rifampicin-sensitivity changes accompanying transcription initiation
-
A.J. Carpousis, and J.D. Gralla Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation, and rifampicin-sensitivity changes accompanying transcription initiation J. Mol. Biol. 183 1985 165 177
-
(1985)
J. Mol. Biol.
, vol.183
, pp. 165-177
-
-
Carpousis, A.J.1
Gralla, J.D.2
-
5
-
-
0028057884
-
RNA displacement pathways during transcription from synthetic RNA-DNA bubble duplexes
-
S.S. Daube, and P.H. von Hippel RNA displacement pathways during transcription from synthetic RNA-DNA bubble duplexes Biochemistry 33 1994 340 347
-
(1994)
Biochemistry
, vol.33
, pp. 340-347
-
-
Daube, S.S.1
Von Hippel, P.H.2
-
6
-
-
0034671288
-
RNA polymerase: Structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II
-
R.H. Ebright RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II J. Mol. Biol. 304 2000 687 698
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 687-698
-
-
Ebright, R.H.1
-
7
-
-
0031443321
-
Transcription regulation by initiating NTP concentration: RRNA synthesis in bacteria
-
T. Gaal, M. Bartlett, W. Ross, C. Turnbough, and R.L. Gourse Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria Science 278 1997 4473 4483
-
(1997)
Science
, vol.278
, pp. 4473-4483
-
-
Gaal, T.1
Bartlett, M.2
Ross, W.3
Turnbough, C.4
Gourse, R.L.5
-
8
-
-
0025744584
-
Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex
-
S.C. Gill, S.E. Weitzel, and P.H. von Hippel Escherichia coli sigma 70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex J. Mol. Biol. 220 1991 307 324
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 307-324
-
-
Gill, S.C.1
Weitzel, S.E.2
Von Hippel, P.H.3
-
10
-
-
0032459427
-
The functional and regulatory roles of sigma factors in transcription
-
C.A. Gross, C. Chan, A. Dombroski, T. Gruber, M. Sharp, J. Tupy, and B. Young The functional and regulatory roles of sigma factors in transcription Cold Spring Harb. Symp. Quant. Biol. 63 1998 141 155
-
(1998)
Cold Spring Harb. Symp. Quant. Biol.
, vol.63
, pp. 141-155
-
-
Gross, C.A.1
Chan, C.2
Dombroski, A.3
Gruber, T.4
Sharp, M.5
Tupy, J.6
Young, B.7
-
11
-
-
0019216997
-
Role of the sigma subunit of Escherichia coli RNA polymerase in initiation. II. Release of sigma from ternary complexes
-
U.M. Hansen, and W.R. McClure Role of the sigma subunit of Escherichia coli RNA polymerase in initiation. II. Release of sigma from ternary complexes J. Biol. Chem. 255 1980 9564 9570
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 9564-9570
-
-
Hansen, U.M.1
McClure, W.R.2
-
12
-
-
0015243649
-
Initiation, elongation and inactivation of lac messenger RNA in Escherichia coli studied studied by measurement of its beta-galactosidase synthesizing capacity in vivo.
-
M. Jacquet, and A. Kepes Initiation, elongation and inactivation of lac messenger RNA in Escherichia coli studied studied by measurement of its beta-galactosidase synthesizing capacity in vivo. J. Mol. Biol. 60 1971 453 472
-
(1971)
J. Mol. Biol.
, vol.60
, pp. 453-472
-
-
Jacquet, M.1
Kepes, A.2
-
13
-
-
0035929295
-
Mean DNA bend angle and distribution of DNA bend angles in the CAP-DNA complex in solution
-
A.N. Kapanidis, Y.W. Ebright, R.D. Ludescher, S. Chan, and R.H. Ebright Mean DNA bend angle and distribution of DNA bend angles in the CAP-DNA complex in solution J. Mol. Biol. 312 2001 453 468
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 453-468
-
-
Kapanidis, A.N.1
Ebright, Y.W.2
Ludescher, R.D.3
Chan, S.4
Ebright, R.H.5
-
14
-
-
2942650138
-
Fluorescence-aided molecule sorting: Analysis of structure and interactions by alternating-laser excitation of single molecules
-
A.N. Kapanidis, N.K. Lee, T.A. Laurence, S. Doose, E. Margeat, and S. Weiss Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules Proc. Natl. Acad. Sci. USA 101 2004 8936 8941
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8936-8941
-
-
Kapanidis, A.N.1
Lee, N.K.2
Laurence, T.A.3
Doose, S.4
Margeat, E.5
Weiss, S.6
-
15
-
-
0031059249
-
Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded
-
N. Komissarova, and M. Kashlev Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded Proc. Natl. Acad. Sci. USA 94 1997 1755 1760
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1755-1760
-
-
Komissarova, N.1
Kashlev, M.2
-
16
-
-
0034725870
-
A structural model of transcription elongation
-
N. Korzheva, A. Mustaev, M. Kozlov, A. Malhotra, V. Nikiforov, A. Goldfarb, and S.A. Darst A structural model of transcription elongation Science 289 2000 619 625
-
(2000)
Science
, vol.289
, pp. 619-625
-
-
Korzheva, N.1
Mustaev, A.2
Kozlov, M.3
Malhotra, A.4
Nikiforov, V.5
Goldfarb, A.6
Darst, S.A.7
-
17
-
-
0024974056
-
RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes
-
B. Krummel, and M.J. Chamberlin RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes Biochemistry 28 1989 7829 7842
-
(1989)
Biochemistry
, vol.28
, pp. 7829-7842
-
-
Krummel, B.1
Chamberlin, M.J.2
-
18
-
-
1342345189
-
Catabolite activator protein: DNA binding and transcription activation
-
C.L. Lawson, D. Swigon, K.S. Murakami, S.A. Darst, H.M. Berman, and R.H. Ebright Catabolite activator protein: DNA binding and transcription activation Curr. Opin. Struct. Biol. 14 2004 10 20
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 10-20
-
-
Lawson, C.L.1
Swigon, D.2
Murakami, K.S.3
Darst, S.A.4
Berman, H.M.5
Ebright, R.H.6
-
19
-
-
22144492905
-
Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation
-
N.K. Lee, A.N. Kapanidis, Y. Wang, X. Michalet, J. Mukhopadhyay, R.H. Ebright, and S. Weiss Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation Biophys. J. 88 2005 2939 2953
-
(2005)
Biophys. J.
, vol.88
, pp. 2939-2953
-
-
Lee, N.K.1
Kapanidis, A.N.2
Wang, Y.3
Michalet, X.4
Mukhopadhyay, J.5
Ebright, R.H.6
Weiss, S.7
-
20
-
-
18344371347
-
Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex
-
V. Mekler, E. Kortkhonjia, J. Mukhopadhyay, J. Knight, A. Revyakin, A.N. Kapanidis, W. Niu, Y.W. Ebright, R. Levy, and R.H. Ebright Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex Cell 108 2002 599 614
-
(2002)
Cell
, vol.108
, pp. 599-614
-
-
Mekler, V.1
Kortkhonjia, E.2
Mukhopadhyay, J.3
Knight, J.4
Revyakin, A.5
Kapanidis, A.N.6
Niu, W.7
Ebright, Y.W.8
Levy, R.9
Ebright, R.H.10
-
21
-
-
0027236182
-
Nucleation of RNA chain formation by Escherichia coli DNA-dependent RNA polymerase
-
W. Metzger, P. Schickor, T. Meier, W. Werel, and H. Heumann Nucleation of RNA chain formation by Escherichia coli DNA-dependent RNA polymerase J. Mol. Biol. 232 1993 35 49
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 35-49
-
-
Metzger, W.1
Schickor, P.2
Meier, T.3
Werel, W.4
Heumann, H.5
-
22
-
-
0344011547
-
Tethering sigma70 to RNA polymerase reveals high in vivo activity of sigma factors and sigma70-dependent pausing at promoter-distal locations
-
R.A. Mooney, and R. Landick Tethering sigma70 to RNA polymerase reveals high in vivo activity of sigma factors and sigma70-dependent pausing at promoter-distal locations Genes Dev. 17 2003 2839 2851
-
(2003)
Genes Dev.
, vol.17
, pp. 2839-2851
-
-
Mooney, R.A.1
Landick, R.2
-
23
-
-
0035943446
-
Translocation of sigma(70) with RNA polymerase during transcription: Fluorescence resonance energy transfer assay for movement relative to DNA
-
J. Mukhopadhyay, A.N. Kapanidis, V. Mekler, E. Kortkhonjia, Y.W. Ebright, and R.H. Ebright Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA Cell 106 2001 453 463
-
(2001)
Cell
, vol.106
, pp. 453-463
-
-
Mukhopadhyay, J.1
Kapanidis, A.N.2
Mekler, V.3
Kortkhonjia, E.4
Ebright, Y.W.5
Ebright, R.H.6
-
24
-
-
0348166030
-
Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function
-
J. Mukhopadhyay, V. Mekler, E. Kortkhonjia, A.N. Kapanidis, Y.W. Ebright, and R.H. Ebright Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function Methods Enzymol. 371 2003 144 159
-
(2003)
Methods Enzymol.
, vol.371
, pp. 144-159
-
-
Mukhopadhyay, J.1
Mekler, V.2
Kortkhonjia, E.3
Kapanidis, A.N.4
Ebright, Y.W.5
Ebright, R.H.6
-
25
-
-
0019879649
-
Abortive initiation and long ribonucleic acid synthesis
-
L.M. Munson, and W.S. Reznikoff Abortive initiation and long ribonucleic acid synthesis Biochemistry 20 1981 2081 2085
-
(1981)
Biochemistry
, vol.20
, pp. 2081-2085
-
-
Munson, L.M.1
Reznikoff, W.S.2
-
26
-
-
0037123602
-
Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
-
K.S. Murakami, S. Masuda, E.A. Campbell, O. Muzzin, and S.A. Darst Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex Science 296 2002 1285 1290
-
(2002)
Science
, vol.296
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.A.3
Muzzin, O.4
Darst, S.A.5
-
27
-
-
0037123659
-
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 a resolution
-
K.S. Murakami, S. Masuda, and S.A. Darst Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution Science 296 2002 1280 1284
-
(2002)
Science
, vol.296
, pp. 1280-1284
-
-
Murakami, K.S.1
Masuda, S.2
Darst, S.A.3
-
28
-
-
0036753065
-
The sigma70 subunit of RNA polymerase is contacted by the lambdaQ antiterminator during early elongation
-
B.E. Nickels, C.W. Roberts, H. Sun, J.W. Roberts, and A. Hochschild The sigma70 subunit of RNA polymerase is contacted by the lambdaQ antiterminator during early elongation Mol. Cell 10 2002 611 622
-
(2002)
Mol. Cell
, vol.10
, pp. 611-622
-
-
Nickels, B.E.1
Roberts, C.W.2
Sun, H.3
Roberts, J.W.4
Hochschild, A.5
-
29
-
-
2542498681
-
The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter
-
B.E. Nickels, J. Mukhopadhyay, S.J. Garrity, R.H. Ebright, and A. Hochschild The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter Nat. Struct. Mol. Biol. 11 2004 544 550
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 544-550
-
-
Nickels, B.E.1
Mukhopadhyay, J.2
Garrity, S.J.3
Ebright, R.H.4
Hochschild, A.5
-
30
-
-
15444366146
-
The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of the nascent RNA during early elongation
-
B.E. Nickels, S.J. Garrity, V. Mekler, L. Minakhin, K. Severinov, R.H. Ebright, and A. Hochschild The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of the nascent RNA during early elongation Proc. Natl. Acad. Sci. USA 102 2005 4488 4493
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4488-4493
-
-
Nickels, B.E.1
Garrity, S.J.2
Mekler, V.3
Minakhin, L.4
Severinov, K.5
Ebright, R.H.6
Hochschild, A.7
-
31
-
-
0031552174
-
The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase
-
E. Nudler, A. Mustaev, E. Lukhtanov, and A. Goldfarb The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase Cell 89 1997 33 41
-
(1997)
Cell
, vol.89
, pp. 33-41
-
-
Nudler, E.1
Mustaev, A.2
Lukhtanov, E.3
Goldfarb, A.4
-
32
-
-
1842788676
-
Promoter unwinding and promoter clearance by RNA polymerase: Detection by single-molecule DNA nanomanipulation
-
A. Revyakin, R.H. Ebright, and T.R. Strick Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation Proc. Natl. Acad. Sci. USA 101 2004 4776 4780
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 4776-4780
-
-
Revyakin, A.1
Ebright, R.H.2
Strick, T.R.3
-
33
-
-
0030576532
-
Function of E. coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing
-
B.Z. Ring, W.S. Yarnell, and J.W. Roberts Function of E. coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing Cell 86 1996 485 493
-
(1996)
Cell
, vol.86
, pp. 485-493
-
-
Ring, B.Z.1
Yarnell, W.S.2
Roberts, J.W.3
-
34
-
-
0014828439
-
Tryptophan messenger ribonucleic acid elongation rates and steady-state levels of tryptophan operon enzymes under various growth conditions
-
J.K. Rose, R.D. Mosteller, and C. Yanofksy Tryptophan messenger ribonucleic acid elongation rates and steady-state levels of tryptophan operon enzymes under various growth conditions J. Mol. Biol. 51 1970 541 550
-
(1970)
J. Mol. Biol.
, vol.51
, pp. 541-550
-
-
Rose, J.K.1
Mosteller, R.D.2
Yanofksy, C.3
-
35
-
-
0025867008
-
Transcription by single molecules of RNA-polymerase observed by light-microscopy
-
D.A. Schaffer, J. Gelles, M.P. Sheetz, and R. Landick Transcription by single molecules of RNA-polymerase observed by light-microscopy Nature 352 1991 444 448
-
(1991)
Nature
, vol.352
, pp. 444-448
-
-
Schaffer, D.A.1
Gelles, J.2
Sheetz, M.P.3
Landick, R.4
-
36
-
-
0023029081
-
Release of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase depends mainly on time elapsed after the start of initiation, not on length of product RNA
-
N. Shimamoto, T. Kamigochi, and H. Utiyama Release of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase depends mainly on time elapsed after the start of initiation, not on length of product RNA J. Biol. Chem. 261 1986 11859 11865
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 11859-11865
-
-
Shimamoto, N.1
Kamigochi, T.2
Utiyama, H.3
-
37
-
-
0022401520
-
Intermediates in transcription initiation from the E. coli lac UV5 promoter
-
D.C. Straney, and D.M. Crothers Intermediates in transcription initiation from the E. coli lac UV5 promoter Cell 43 1985 449 459
-
(1985)
Cell
, vol.43
, pp. 449-459
-
-
Straney, D.C.1
Crothers, D.M.2
-
38
-
-
0014669901
-
Cyclic re-use of the RNA polymerase sigma factor
-
A.A. Travers, and R.R. Burgess Cyclic re-use of the RNA polymerase sigma factor Nature 222 1969 537 540
-
(1969)
Nature
, vol.222
, pp. 537-540
-
-
Travers, A.A.1
Burgess, R.R.2
-
39
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 a resolution
-
D.G. Vassylyev, S. Sekine, O. Laptenko, J. Lee, M.N. Vassylyeva, S. Borukhov, and S. Yokoyama Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution Nature 417 2002 712 719
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.G.1
Sekine, S.2
Laptenko, O.3
Lee, J.4
Vassylyeva, M.N.5
Borukhov, S.6
Yokoyama, S.7
-
40
-
-
11144228250
-
Association of RNA polymerase with transcribed regions in Escherichia coli
-
J.T. Wade, and K. Struhl Association of RNA polymerase with transcribed regions in Escherichia coli Proc. Natl. Acad. Sci. USA 101 2004 17777 17782
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 17777-17782
-
-
Wade, J.T.1
Struhl, K.2
-
41
-
-
0032582494
-
Force and velocity measured for single molecules of RNA polymerase
-
M.D. Wang, M.J. Schnitzer, H. Yin, R. Landick, J. Gelles, and S.M. Block Force and velocity measured for single molecules of RNA polymerase Science 282 1998 902 907
-
(1998)
Science
, vol.282
, pp. 902-907
-
-
Wang, M.D.1
Schnitzer, M.J.2
Yin, H.3
Landick, R.4
Gelles, J.5
Block, S.M.6
|