-
1
-
-
0032459427
-
The functional and regulatory roles of σ factors in transcription
-
Gross, C.A. et al. The functional and regulatory roles of σ factors in transcription. Cold Spring Harbor Symp. Quant. Biol. 63, 141-155 (1998).
-
(1998)
Cold Spring Harbor Symp. Quant. Biol.
, vol.63
, pp. 141-155
-
-
Gross, C.A.1
-
2
-
-
0022247421
-
Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation
-
Carpousis, A. & Gralla, J. Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. J. Mol. Biol. 183, 165-177 (1985).
-
(1985)
J. Mol. Biol.
, vol.183
, pp. 165-177
-
-
Carpousis, A.1
Gralla, J.2
-
3
-
-
0023102647
-
A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter
-
Straney, D. & Crothers, D. A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter. J. Mol. Biol. 193, 267-278 (1987).
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 267-278
-
-
Straney, D.1
Crothers, D.2
-
4
-
-
0024974056
-
RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes
-
Krummel, B. & Chamberlin, M.J. RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes. Biochemistry 28, 7829-7842 (1989).
-
(1989)
Biochemistry
, vol.28
, pp. 7829-7842
-
-
Krummel, B.1
Chamberlin, M.J.2
-
5
-
-
0027236182
-
Nucleation of RNA chain formation by Escherichia coli DNA-dependent RNA polymerase
-
Metzger, W., Schickor, P., Meier, T., Werel, W. & Heumann, H. Nucleation of RNA chain formation by Escherichia coli DNA-dependent RNA polymerase. J. Mol. Biol. 232, 35-49 (1993).
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 35-49
-
-
Metzger, W.1
Schickor, P.2
Meier, T.3
Werel, W.4
Heumann, H.5
-
8
-
-
18344371347
-
Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex
-
Mekler, V. et al. Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex. Cell 108, 599-614 (2002).
-
(2002)
Cell
, vol.108
, pp. 599-614
-
-
Mekler, V.1
-
9
-
-
0037123659
-
Structural basis of transcription initiation: T. aquaticus RNA polymerase holoenzyme at 4 Å resolution
-
Murakami, K.S., Masuda, S. & Darst, S.A. Structural basis of transcription initiation: T. aquaticus RNA polymerase holoenzyme at 4 Å resolution. Science 296: 1280-1284 (2002).
-
(2002)
Science
, vol.296
, pp. 1280-1284
-
-
Murakami, K.S.1
Masuda, S.2
Darst, S.A.3
-
10
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution
-
Vassylyev, D.G. et al. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution. Nature 417, 712-719 (2002).
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.G.1
-
11
-
-
0037123763
-
Views of transcription initiation
-
Young, B.A., Gruber, T.M. & Gross, C.A. Views of transcription initiation. Cell 109, 417-420 (2002).
-
(2002)
Cell
, vol.109
, pp. 417-420
-
-
Young, B.A.1
Gruber, T.M.2
Gross, C.A.3
-
12
-
-
0023029081
-
Release of the σ subunit of Escherichia coli DNA-dependent RNA polymerase depends mainly on time elapsed after the start of initiation, not on length of product RNA
-
Shimamoto, N., Kamigochi, T. & Utiyama, H. Release of the σ subunit of Escherichia coli DNA-dependent RNA polymerase depends mainly on time elapsed after the start of initiation, not on length of product RNA. J. Biol. Chem. 261, 11859-11865 (1986).
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 11859-11865
-
-
Shimamoto, N.1
Kamigochi, T.2
Utiyama, H.3
-
13
-
-
0023661263
-
Transcription initiation by Escherichia coli RNA polymerase at the gene 11 promoter of M13 phage: Stability of ternary complex, direct photocrosslinking to nascent RNA, and retention of σ subunit
-
Osumi-Davis, P.A., Woody, A.Y. & Woody, R.W. Transcription initiation by Escherichia coli RNA polymerase at the gene 11 promoter of M13 phage: stability of ternary complex, direct photocrosslinking to nascent RNA, and retention of σ subunit. Biochim. Biophys. Acta. 910, 130-141 (1987).
-
(1987)
Biochim. Biophys. Acta
, vol.910
, pp. 130-141
-
-
Osumi-Davis, P.A.1
Woody, A.Y.2
Woody, R.W.3
-
15
-
-
0035943341
-
70-retaining transcription elongation complexes from Escherichia coli
-
70-retaining transcription elongation complexes from Escherichia coli. Cell 106, 443-451 (2001).
-
(2001)
Cell
, vol.106
, pp. 443-451
-
-
Bar-Nahum, G.1
Nudler, E.2
-
16
-
-
0035943446
-
70 with RNA polymerase during transcription: Fluorescence resonance energy transfer assay for movement relative to DNA
-
70 with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA. Cell 106, 453-463 (2001).
-
(2001)
Cell
, vol.106
, pp. 453-463
-
-
Mukhopadhyay, J.1
-
17
-
-
0032466791
-
Antitermination by bacteriophage λ Q protein
-
Roberts, J.W. et al. Antitermination by bacteriophage λ Q protein. Cold Spring Harbor Symp. Quant. Biol. 63, 319-325 (1998).
-
(1998)
Cold Spring Harbor Symp. Quant. Biol.
, vol.63
, pp. 319-325
-
-
Roberts, J.W.1
-
18
-
-
0034192263
-
DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: A systematic study
-
Burr, T., Mitchell J., Kolb, A., Minchin, S. & Busby, S. DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study. Nucleic Acids Res. 28, 1864-1870 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1864-1870
-
-
Burr, T.1
Mitchell, J.2
Kolb, A.3
Minchin, S.4
Busby, S.5
-
19
-
-
0014371028
-
The nature of mutants in the lac promoter region
-
Arditti, R.R., Scaife, J.G. & Beckwith, J.R. The nature of mutants in the lac promoter region. J. Mol. Biol. 38, 421-426 (1968).
-
(1968)
J. Mol. Biol.
, vol.38
, pp. 421-426
-
-
Arditti, R.R.1
Scaife, J.G.2
Beckwith, J.R.3
-
20
-
-
0034507953
-
Function of transcription cleavage factors GreA and GreB at a regulatory pause site
-
Marr, M.T. & Roberts, J.W. Function of transcription cleavage factors GreA and GreB at a regulatory pause site. Mol. Cell 6, 1275-1285 (2000).
-
(2000)
Mol. Cell
, vol.6
, pp. 1275-1285
-
-
Marr, M.T.1
Roberts, J.W.2
-
21
-
-
0022389446
-
Phage λ gene-Q antiterminator recognizes RNA polymerase near the promoter and accelerates it through a pause site
-
Grayhack, E.J., Yang, X.J., Lau, L.F. & Roberts, J.W. Phage λ gene-Q antiterminator recognizes RNA polymerase near the promoter and accelerates it through a pause site. Cell 42, 259-269 (1985).
-
(1985)
Cell
, vol.42
, pp. 259-269
-
-
Grayhack, E.J.1
Yang, X.J.2
Lau, L.F.3
Roberts, J.W.4
-
22
-
-
0026663397
-
The phage λ gene Q transcription antiterminator binds DNA in the late gene promoter as it modifies RNA-polymerase
-
Yarnell, W.S. & Roberts, J.W. The phage λ gene Q transcription antiterminator binds DNA in the late gene promoter as it modifies RNA-polymerase. Cell 69, 1181-1189 (1992).
-
(1992)
Cell
, vol.69
, pp. 1181-1189
-
-
Yarnell, W.S.1
Roberts, J.W.2
-
23
-
-
0032532456
-
70 required for promoter function and antitermination by phage λ Q protein
-
70 required for promoter function and antitermination by phage λ Q protein. Genes Dev. 12, 3276-3285 (1998).
-
(1998)
Genes Dev.
, vol.12
, pp. 3276-3285
-
-
Ko, D.C.1
Marr, M.T.2
Guo, T.S.3
Roberts, J.W.4
-
24
-
-
0015712889
-
The nucleotide sequence of the lactose messenger ribonucleic acid transcribed from the UV5 promoter mutant of Escherichia coli
-
Maizels, N.M. The nucleotide sequence of the lactose messenger ribonucleic acid transcribed from the UV5 promoter mutant of Escherichia coli. Proc. Natl. Acad. Sci. USA 70, 3585-3589 (1973).
-
(1973)
Proc. Natl. Acad. Sci. USA
, vol.70
, pp. 3585-3589
-
-
Maizels, N.M.1
-
25
-
-
0027536870
-
Transcript cleavage factors from E. coli
-
Borukhov, S., Sagitov, V. & Goldfarb, A. Transcript cleavage factors from E. coli. Cell 72, 459-466 (1993).
-
(1993)
Cell
, vol.72
, pp. 459-466
-
-
Borukhov, S.1
Sagitov, V.2
Goldfarb, A.3
-
26
-
-
0037073048
-
Promoting elongation with transcript cleavage stimulatory factors
-
Fish, R.N. & Kane, C.M. Promoting elongation with transcript cleavage stimulatory factors. Biochim. Biophys. Acta. 1577, 287-307 (2002).
-
(2002)
Biochim. Biophys. Acta
, vol.1577
, pp. 287-307
-
-
Fish, R.N.1
Kane, C.M.2
-
27
-
-
0348166030
-
Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function
-
Mukhopadhyay, J. et al. Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function. Methods Enzymol. 371, 144-159 (2003).
-
(2003)
Methods Enzymol.
, vol.371
, pp. 144-159
-
-
Mukhopadhyay, J.1
-
28
-
-
2542456496
-
70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription
-
advance online publication, 2 May 2004 (doi: 10.1038/nsmb 768)
-
70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription. Nat. Struct. Mol. Biol. 11, advance online publication, 2 May 2004 (doi: 10.1038/nsmb768) (2004).
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
-
-
Brodolin, K.1
Zenkin, N.2
Mustaev, A.3
Mamaeva, D.4
Heumann, H.5
-
29
-
-
0024412450
-
Pseudorevertants of a lac promoter mutation reveal overlapping nascent promoters
-
Karls, R. et al. Pseudorevertants of a lac promoter mutation reveal overlapping nascent promoters. Nucleic Acids Res. 17, 3927-3939 (1989).
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 3927-3939
-
-
Karls, R.1
-
30
-
-
0027978530
-
Function of a nontranscribed DNA strand site in transcription elongation
-
Ring, B.Z. & Roberts, J.W. Function of a nontranscribed DNA strand site in transcription elongation. Cell 78, 317-324 (1994).
-
(1994)
Cell
, vol.78
, pp. 317-324
-
-
Ring, B.Z.1
Roberts, J.W.2
-
31
-
-
9144270496
-
Regulon DB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12
-
Salgado, H. et al. Regulon DB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. Nucleic Acids Res. 32, D303-D306 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Salgado, H.1
-
32
-
-
0038756088
-
Cooperation between RNA polymerase molecules in transcription elongation
-
Epshtein, V. & Nudler, E. Cooperation between RNA polymerase molecules in transcription elongation. Science 300, 801-805 (2003).
-
(2003)
Science
, vol.300
, pp. 801-805
-
-
Epshtein, V.1
Nudler, E.2
-
33
-
-
0141625269
-
Transcription through the roadblocks: The role of RNA polymerase cooperation
-
Epshtein, V., Toulme, F., Rahmouni, A.R., Borukhov, S. & Nudler, E. Transcription through the roadblocks: the role of RNA polymerase cooperation. EMBO J. 22, 4719-4727 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 4719-4727
-
-
Epshtein, V.1
Toulme, F.2
Rahmouni, A.R.3
Borukhov, S.4
Nudler, E.5
-
35
-
-
0032529668
-
Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli
-
Whipple, F.W. Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli. Nucleic Acids Res. 26, 3700-3706 (1998).
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3700-3706
-
-
Whipple, F.W.1
-
36
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Plainview, New York
-
Miller, J.H. In Experiments in Molecular Genetics (Cold Spring Harbor Laboratory Press, Plainview, New York, 1972).
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
|