Fluorescence Resonance Energy Transfer (FRET) in Analysis of Transcription-Complex Structure and Function

Methods in Enzymology

Volumn 371, Issue , 2003, Pages 144-159

  Mukhopadhyay, Jayanta ^a   Mekler, Vladimir ^a   Kortkhonjia, Ekaterine ^a   Kapanidis, Achillefs N ^b   Ebright, Yon W ^a   Ebright, Richard H ^a  

^a RUTGERS UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA FRAGMENT; RNA POLYMERASE;

DNA PROBE; DNA TRANSCRIPTION; ENERGY TRANSFER; ESCHERICHIA COLI; FLUORESCENCE; FLUORESCENCE RESONANCE ENERGY TRANSFER; NONHUMAN; PRIORITY JOURNAL; REVIEW; STRUCTURE ACTIVITY RELATION;

ESCHERICHIA COLI;

EID: 0348166030     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(03)71010-6     Document Type: Article

References (34)

1. J. Mukhopadhyay, A. Kapanidis, V. Mekler, E. Kortkhonjia, Y. Ebright, and R. Ebright, Cell 106, 453 (2001).
2. V. Mekler, E. Kortkhonjia, J. Mukhopadhyay, J. Knight, A. Revyakin, A. Kapanidis, W. Niu, Y. Ebright, R. Levy, and R. Ebright, Cell 108, 599 (2002).
3. T. Förster, Ann. Phys. 2, 55 (1948).
4. D. Lilley and T. Wilson, Curr. Opin. Chem. Biol. 4, 507 (2000).
5. P. Selvin, Nature Structl. Biol. 7, 730 (2000).
6. G. Zhang, E. Campbell, L. Minakhin, C. Richter, K. Severinov, and S. Darst, Cell 98, 811 (1999).
7. P. Cramer, D. Bushnell, and R. Kornberg, Science 292, 1863 (2001).
8. A. Gnatt, P. Cramer, J. Fu, D. Bushnell, and R. Kornberg, Science 292, 1876 (2001).
9. K. Murakami, S. Masuda, and S. Darst, Science 296, 1280 (2002).
10. K. Murakami, S. Masuda, E. Campbell, O. Muzzin, and S. Darst, Science 296, 1285 (2002).
11. D. Vassylyev, S. Sekine, O. Laptenko, J. Lee, M. Vassylyeva, S. Borukhov, and S. Yokoyama, Nature 417, 712 (2002).
12. F. M. Orson, Bio Techniques 16, 592 (1994).
13. G. Felsenfeld and S. Hirschman, J. Mol. Biol. 13, 407 (1965).
14. R. Mujumdar, L. Ernst, S. Mujumdar, C. Lewis, and A. Waggoner, Bioconj. Chem. 4, 105 (1993).
15. F. Studier, A. Rosenberg, J. Dunn, and J. Dubendorff, Methods Enzymol. 185, 60 (1990).
16. J. T. Owens, R. Miyake, K. Murakami, A. J. Chmura, N. Fujita, A. Ishihama, and C. Meares, Proc. Natl. Acad. Sci. USA 95, 6021 (1998).
17. S. Callaci, E. Heyduk, and T. Heyduk, J. Biol. Chem. 273, 32995 (1998).
18. J. Bown, J. Owens, C. Meares, N. Fujita, A. Ishihama, S. Busby, and S. Minchin, J. Biol. Chem. 274, 2263 (1999).
19. J. H. Miller, "Experiments in Molecular Genetics." Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 1972.
20. G. Kwon, A. Remmers, S. Datta, and R. Neubig, Biochemistry 32, 2401 (1993).
21. M. Bradford, Anal. Biochem. 72, 248 (1976).
22. H. Tang, K. Severinov, A. Goldfarb, D. Fenyo, B. Chait, and R. Ebright, Genes Dev. 8, 3058 (1994).
23. W. Niu, Y. Kim, G. Tau, T. Heyduk, and R. Ebright, Cell 87, 1123 (1996).
24. R. Burgess and J. Jendrisak, Biochemistry 14, 4634 (1975).
25. G. Christie, S. Cale, L. Isaksson, D. Jin, M. Xu, B. Sauer, and R. Calendar, J. Bacteriol. 178, 6991 (1996).
26. L. Minakhin, S. Bhagat, A. Brunning, E. Campbell, S. Darst, R. Ebright, and K. Severinov, Proc. Natl. Acad. Sci. USA 98, 892 (2001).
27. S. Gill, S. Weitzel, and P. von Hippel, J. Mol. Biol. 220, 307 (1991).
28. R. Cerione, R. McCarty, and G. Hammes, Biochemistry 22, 769 (1983).
29. W. Suh, S. Leirmo, and M. Record, Jr., Biochemistry 31, 7815 (1992).
30. N. Naryshkin, A. Revyakin, Y. Kim, V. Mekler, and R. Ebright, Cell 101, 601 (2000).
31. C. Cech and W. McClure, Biochemistry 19, 2440 (1980).
32. R. Clegg, Methods Enzymol. 211, 353 (1992).
33. J. Lakowicz, "Principles of Fluorescence Spectroscopy." Kluwer, New York, 1999.
34. C. Gross, C. Chan, A. Dombroski, T. Gruber, M. Sharp, J. Tupy, and B. Young, Cold Spring Harbor Symp. Quant. Biol. 63, 141 (1998).