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Volumn 33, Issue 17, 2005, Pages 5677-5690

Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: Role of the number of rings and positive charges in the specific binding leading to miscoding

Author keywords

[No Author keywords available]

Indexed keywords

AMINOGLYCOSIDE ANTIBIOTIC AGENT; BACTERIAL RNA; FRAMYCETIN; GENTAMICIN; HYDROGEN; KANAMYCIN A; LIVIDOMYCIN; NEAMINE; OLIGONUCLEOTIDE; RIBOSTAMYCIN; ADENINE; AMINOGLYCOSIDE; ANTIINFECTIVE AGENT; DRUG DERIVATIVE; GENTAMICIN C; KANAMYCIN; LIVIDOMYCINS; OLIGORIBONUCLEOTIDE; PAROMOMYCIN; RNA 16S;

EID: 27244458194     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki862     Document Type: Article
Times cited : (308)

References (34)
  • 1
    • 0002751916 scopus 로고
    • Misreading of RNA codewords induced by aminoglycoside antibiotics
    • Davies,J., Gorini,L. and Davis,B.D. (1965) Misreading of RNA codewords induced by aminoglycoside antibiotics. Mol. Pharmacol., 1, 93-106.
    • (1965) Mol. Pharmacol. , vol.1 , pp. 93-106
    • Davies, J.1    Gorini, L.2    Davis, B.D.3
  • 2
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites in 16S ribosomal RNA
    • Moazed,D. and Noller,H.F. (1987) Interaction of antibiotics with functional sites in 16S ribosomal RNA. Nature, 327, 389-394.
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 4
    • 0037184536 scopus 로고    scopus 로고
    • Selection of tRNA by the ribosome requires a transition from an open to a closed form
    • Ogle,J.M., Murphy,F.V., Tarry,M.J. and Ramakrishnan,V. (2002) Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell, 111, 721-732.
    • (2002) Cell , vol.111 , pp. 721-732
    • Ogle, J.M.1    Murphy, F.V.2    Tarry, M.J.3    Ramakrishnan, V.4
  • 5
    • 0038403669 scopus 로고    scopus 로고
    • Insights into the decoding mechanism from recent ribosome structures
    • Ogle,J.M., Carter,A.P. and Ramakrishnan,V. (2003) Insights into the decoding mechanism from recent ribosome structures. Trends Biochem. Sci., 28, 259-266.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 259-266
    • Ogle, J.M.1    Carter, A.P.2    Ramakrishnan, V.3
  • 7
    • 0034699519 scopus 로고    scopus 로고
    • Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
    • Carter,A.P., Clemons,W.M., Brodersen,D.E., Morgan-Warren,R.J., Wimberly,B.T. and Ramakrishnan,V. (2000) Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature, 407, 340-348.
    • (2000) Nature , vol.407 , pp. 340-348
    • Carter, A.P.1    Clemons, W.M.2    Brodersen, D.E.3    Morgan-Warren, R.J.4    Wimberly, B.T.5    Ramakrishnan, V.6
  • 8
    • 0034886697 scopus 로고    scopus 로고
    • Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site
    • Vicens,Q. and Westhof,E. (2001) Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site. Structure, 9, 647-658.
    • (2001) Structure , vol.9 , pp. 647-658
    • Vicens, Q.1    Westhof, E.2
  • 9
    • 0035986708 scopus 로고    scopus 로고
    • Crystal structure of a complex between the aminoglycoside tobramycin and an oligonucléotide containing the ribosomal decoding A site
    • Vicens,Q. and Westhof,E. (2002) Crystal structure of a complex between the aminoglycoside tobramycin and an oligonucléotide containing the ribosomal decoding A site. Chem. Biol., 9, 747-755.
    • (2002) Chem. Biol. , vol.9 , pp. 747-755
    • Vicens, Q.1    Westhof, E.2
  • 10
    • 0037470560 scopus 로고    scopus 로고
    • Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide
    • Vicens,Q. and Westhof,E. (2003) Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide. J. Mol. Biol., 326, 1175-1188.
    • (2003) J. Mol. Biol. , vol.326 , pp. 1175-1188
    • Vicens, Q.1    Westhof, E.2
  • 11
    • 0142106950 scopus 로고    scopus 로고
    • RNA as a drug target: The case of aminoglycosides
    • Vicens,Q. and Westhof,E. (2003) RNA as a drug target: The case of aminoglycosides. Chembiochem., 4, 1018-1023.
    • (2003) Chembiochem. , vol.4 , pp. 1018-1023
    • Vicens, Q.1    Westhof, E.2
  • 12
    • 0033961143 scopus 로고    scopus 로고
    • Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome
    • Pape,T., Wintermeyer,W. and Rodnina,M.V. (2000) Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome. Nature Struct. Biol., 7, 104-107.
    • (2000) Nature Struct. Biol. , vol.7 , pp. 104-107
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 13
    • 0034725528 scopus 로고    scopus 로고
    • Water and ion binding around RNA and DNA (C,G) oligomers
    • Auffinger,P. and Westhof,E. (2000) Water and ion binding around RNA and DNA (C,G) oligomers. J. Mol. Biol., 300, 1113-1131.
    • (2000) J. Mol. Biol. , vol.300 , pp. 1113-1131
    • Auffinger, P.1    Westhof, E.2
  • 14
    • 0035793219 scopus 로고    scopus 로고
    • Water and ion binding around r(UpA)12 and d(TpA)12 oligomers-comparison with RNA and DNA (CpG)12 duplexes
    • Auffinger,P. and Westhof,E. (2001) Water and ion binding around r(UpA)12 and d(TpA)12 oligomers-comparison with RNA and DNA (CpG)12 duplexes. J. Mol. Biol., 305, 1057-1072.
    • (2001) J. Mol. Biol. , vol.305 , pp. 1057-1072
    • Auffinger, P.1    Westhof, E.2
  • 15
    • 0031059866 scopus 로고    scopus 로고
    • Carter,C.W.J. and Sweet,R.M. (eds), Processing of X-ray diffraction data collected in oscillation mode, Academic Press
    • Otwinowski,Z. and Minor,W. (1996) In Carter,C.W.J. and Sweet,R.M. (eds), Methods in Enzymology. Processing of X-ray diffraction data collected in oscillation mode, Academic Press, Vol. 276, pp. 307-326.
    • (1996) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 16
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computing Project Number 4
    • Collaborative Computing Project Number 4. (1994) The CCP4 suite: programs for protein crystallography. Acta. Crystallogr. D Biol. Crystallogr., 50, 760-763.
    • (1994) Acta Crystallogr. D Biol. Crystallogr. , vol.50 , pp. 760-763
  • 19
    • 0037467430 scopus 로고    scopus 로고
    • The complex of a designer antibiotic with a model aminoacyl site of the 30S ribosomal subunit revealed by X-ray crystallography
    • Russell,R.J., Murray,J.B., Lentzen,G., Haddad,J. and Mobashery,S. (2003) The complex of a designer antibiotic with a model aminoacyl site of the 30S ribosomal subunit revealed by X-ray crystallography. J. Am. Chem. Soc., 125, 3410-3411.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 3410-3411
    • Russell, R.J.1    Murray, J.B.2    Lentzen, G.3    Haddad, J.4    Mobashery, S.5
  • 20
    • 0032538956 scopus 로고    scopus 로고
    • Structural origins of gentamicin antibiotic action
    • Yoshizawa,S., Fourmy,D. and Puglisi,J.D. (1998) Structural origins of gentamicin antibiotic action. EMBO J., 17, 6437-46448.
    • (1998) EMBO J. , vol.17 , pp. 6437-6448
    • Yoshizawa, S.1    Fourmy, D.2    Puglisi, J.D.3
  • 21
    • 0037229886 scopus 로고    scopus 로고
    • Comparison of X-ray crystal structure of the 30S subunit-antibiotic complex with NMR structure of decoding site oligonucleotide-paromomycin complex
    • Lynch,S.R., Gonzalez,R.L. and Puglisi,J.D. (2003) Comparison of X-ray crystal structure of the 30S subunit-antibiotic complex with NMR structure of decoding site oligonucleotide-paromomycin complex. Structure (Camb), 11, 43-53.
    • (2003) Structure (Camb.) , vol.11 , pp. 43-53
    • Lynch, S.R.1    Gonzalez, R.L.2    Puglisi, J.D.3
  • 22
    • 0033007592 scopus 로고    scopus 로고
    • Enhanced RNA binding of dimerized aminoglycosides
    • Michael, K., Wang,H. and Tor,Y. (1999) Enhanced RNA binding of dimerized aminoglycosides. Bioorg. Med. Chem., 7, 1361-1371.
    • (1999) Bioorg. Med. Chem. , vol.7 , pp. 1361-1371
    • Michael, K.1    Wang, H.2    Tor, Y.3
  • 26
    • 0035010211 scopus 로고    scopus 로고
    • Geometric nomenclature and classification of RNA base pairs
    • Leontis,N.B. and Westhof,E. (2001) Geometric nomenclature and classification of RNA base pairs. RNA, 7, 499-512.
    • (2001) RNA , vol.7 , pp. 499-512
    • Leontis, N.B.1    Westhof, E.2
  • 27
    • 0033168212 scopus 로고    scopus 로고
    • Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome
    • Pape,T., Wintermeyer,W. and Rodnina,M. (1999) Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome. EMBO J., 18, 3800-3807.
    • (1999) EMBO J. , vol.18 , pp. 3800-3807
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.3
  • 28
    • 7444247816 scopus 로고    scopus 로고
    • Targeting the A site RNA of the Escherichia coli ribosomal 30 S subunit by 2′-O-methyl oligoribonucleotides: A quantitative equilibrium dialysis binding assay and differential effects of aminoglycoside antibiotics
    • Abelian,A., Walsh,A.P., Lentzen,G., Aboul-Ela,F. and Gait,M.J. (2004) Targeting the A site RNA of the Escherichia coli ribosomal 30 S subunit by 2′-O-methyl oligoribonucleotides: A quantitative equilibrium dialysis binding assay and differential effects of aminoglycoside antibiotics. Biochem. J., 383, 201-208.
    • (2004) Biochem. J. , vol.383 , pp. 201-208
    • Abelian, A.1    Walsh, A.P.2    Lentzen, G.3    Aboul-Ela, F.4    Gait, M.J.5
  • 30
    • 12544252978 scopus 로고    scopus 로고
    • Mutagenesis of 16S rRNA C1409-G1491 base-pair differentiates between 6′OH and 6′NH3+ aminoglycosides
    • Pfister,P., Hobbie,S., Brull,C., Corti,N., Vasella,A., Westhof,E. and Bottger,E.C. (2005) Mutagenesis of 16S rRNA C1409-G1491 base-pair differentiates between 6′OH and 6′NH3+ aminoglycosides. J. Mol. Biol., 346, 467-475.
    • (2005) J. Mol. Biol. , vol.346 , pp. 467-475
    • Pfister, P.1    Hobbie, S.2    Brull, C.3    Corti, N.4    Vasella, A.5    Westhof, E.6    Bottger, E.C.7
  • 31
    • 0142075322 scopus 로고    scopus 로고
    • The molecular basis for A site mutations conferring aminoglycoside resistance: Relationship between ribosomal susceptibility and X-ray crystal structures
    • Pfister,P., Hobbie,S., Vicens,Q., Bottger,E.C. and Westhof,E. (2003) The molecular basis for A site mutations conferring aminoglycoside resistance: Relationship between ribosomal susceptibility and X-ray crystal structures. ChemBioChem., 4, 1078-1088.
    • (2003) ChemBioChem. , vol.4 , pp. 1078-1088
    • Pfister, P.1    Hobbie, S.2    Vicens, Q.3    Bottger, E.C.4    Westhof, E.5
  • 32
    • 20444495201 scopus 로고    scopus 로고
    • Drugs targeting the ribosome
    • Hermann,T. (2005) Drugs targeting the ribosome. Curr. Opin. Struct. Biol., 15, 355-366.
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 355-366
    • Hermann, T.1
  • 34
    • 0032126750 scopus 로고    scopus 로고
    • Specificity of aminoglycoside antibiotics for the A site of the decoding region of ribosomal RNA
    • Wong,C.H., Hendrix,M., Priestley,E.S. and Greenberg,W.A. (1998) Specificity of aminoglycoside antibiotics for the A site of the decoding region of ribosomal RNA. Chem. Biol., 5, 397-406.
    • (1998) Chem. Biol. , vol.5 , pp. 397-406
    • Wong, C.H.1    Hendrix, M.2    Priestley, E.S.3    Greenberg, W.A.4


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