Further mapping of quantitative trait loci for postnatal growth in an intersubspecific backcross of wild Mus musculus castaneus and C57BL/6J mice

Genetical Research

Volumn 85, Issue 2, 2005, Pages 127-137

  Ishikawa, Akira ^a   Hatada, Sayuri ^a   Nagamine, Yoshitaka ^b   Namikawa, Takao ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF LIVESTOCK AND GRASSLAND SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ANIMAL CELL; ARTICLE; BACKCROSSING; BODY SIZE; BODY WEIGHT; CHROMOSOME 2; CHROMOSOME ANALYSIS; CONTROLLED STUDY; FEMALE; GENE INTERACTION; GENE STRUCTURE; GENETIC EPISTASIS; GENOTYPE; HETEROZYGOSITY; HOMOZYGOSITY; INBRED STRAIN; MALE; MOUSE; NONHUMAN; PHILIPPINES; POSTNATAL GROWTH; QUANTITATIVE TRAIT LOCUS; QUANTITATIVE TRAIT LOCUS MAPPING; SEX DIFFERENCE; STRAIN DIFFERENCE; TIME; WEIGHT GAIN;

ANIMALS; BODY WEIGHT; CHROMOSOME MAPPING; CROSSES, GENETIC; EPISTASIS, GENETIC; MICE; MICE, INBRED C57BL; QUANTITATIVE TRAIT LOCI; SEX FACTORS;

MUS MUSCULUS CASTANEUS;

EID: 22144447453     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S001667230500738X     Document Type: Article

References (50)

1. Andersson, L. & Georges, M. (2004). Domestic animal genomics: deciphering the genetics of complex traits. Nature Reviews Genetics 5, 202-212.
2. Atchley, W. R. & Zhu, J. (1997). Developmental quantitative genetics, conditional epigenetic variability and growth in mice. Genetics 147, 765-776.
3. Atchley, W. R., Xu, S. & Cowley, D. E. (1997). Altering developmental trajectories in mice by restricted index selection. Genetics 146, 629-640.
4. Basten, C. J., Weir, B. S. & Zeng, Z.-B. (2003). QTL Cartographer Version 1.17. Raleigh, North Carolina: Department of Statistics, North Carolina State University.
5. Brockmann, G. A., Haley, C. S., Renne, U., Knott, S. A. & Schwerin, M. (1998). Quantitative trait loci affecting body weight and fatness from a mouse line selected for extreme high growth. Genetics 150, 369-381.
6. 2 variance of growth and obesity in DU6i × DBA/2 mice. Genome Research 10, 1941-1957.
7. Butterfield, R. J., Roper, R. J., Rhein, D. M., Melvold, R. W., Haynes, L., Ma, R. Z., Doerge, R. W. & Teuscher, C. (2003). Sex-specific quantitative trait loci govern susceptibility to Theiler's murine encephalomyelitis virus-induced demyelination. Genetics 163, 1041-1046.
8. Carlborg, O. & Haley, C. S. (2004). Epistasis: too often neglected in complex trait studies? Nature Reviews Genetics 5, 618-625.
9. Carlborg, O., Kerje, S., Schütz, K., Jacobsson, L., Jensen, P. & Andersson, L. (2003). A global search reveals epistatic interaction between QTL for early growth in the chicken. Genome Research 13, 413-421.
10. Cheverud, J. M. (2000). Detecting epistasis among quantitative trait loci. In Epistasis and the Evolutionary Process (ed. J. B. Wolf, E. D. Brodie III & M. J. Wade), pp. 58-81. Oxford, UK: Oxford University Press.
11. Cheverud, J. M., Routman, E. J., Duarte, F. A. M., van Swinderen, B. & Cothran, K. (1996). Quantitative trait loci for murine growth. Genetics 142, 1305-1319.
12. Cheverud, J. M., Vaughn, T. T., Pletscher, L. S., Peripato, A. C., Adams, E. S., Erikson, K. J. & King-Ellison, K. J. (2001). Genetic architecture of adiposity in the cross of LG/J and SM/J inbred mice. Mammalian Genome 12, 3-12.
13. Chmielewicz, K. M. & Manly, K. F. (2002). User Manual for QTX, revised for QTXb17. Buffalo, New York: Roswell Park Cancer Institute.
14. Churchill, G. A. & Doerge, R. W. (1994). Empirical threshold values for quantitative trait mapping. Genetics 138, 963-971.
15. Darvasi, A. & Soller, M. (1997). A simple method to calculate resolving power and confidence interval of QTL map location. Behavior Genetics 27, 125-132.
16. Doerge, R. W. (2002). Mapping and analysis of quantitative trait loci in experimental populations. Nature Reviews Genetics 3, 43-52.
17. Doerge, R. W., Zeng, Z.-B. & Weir, B. S. (1997). Statistical issues in the search for genes affecting quantitative traits in experimental populations. Statistical Science 12, 195-219.
18. Dragani, T. A., Zeng, Z.-B., Canzian, F., Gariboldi, M., Ghilarducci, M. T., Manenti, G. & Pierotti, M. A. (1995). Mapping of body weight loci on mouse chromosome X. Mammalian Genome 6, 778-781.
19. Frary, A., Nesbitt, T. C., Esbitt, A., Frary, A., Grandillo, S., van der Knaap, E., Cong, B., Lui, J., Meller, J., Elber, R., Aipert, K. B. & Tanksley, S. D. (2000). fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. Science 289, 85-88.
20. Goodnight, C. J. (2000). Quantitative trait loci and gene interaction: the quantitative genetics of meta-populations. Heredity 84, 587-598.
21. Grisart, B., Coppieters, W., Farnir, F., Karim, L., Ford, C., Berzi, P., Cambisano, N., Mni, M., Reid, S., Simon, P., Spelman, R., Georges, M. & Snell, R. (2001). Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Research 12, 222-231.
22. Guenet, J. & Bonhomme, F. (2003). Wild mice: an ever-increasing contribution to a popular mammalian model. Trends in Genetics 19, 24-31.
23. Kao, C. H., Zeng, Z.-B. & Teasdale, R. D. (1999). Multiple interval mapping for quantitative trait loci. Genetics 152, 1203-1216.
24. Klein, R. F., Allard, J., Avnur, Z., Nikolcheva, T., Rotstein, D., Carlos, A. S., Shea, M., Waters, R. V., Belknap, J. K., Peltz, G. & Orwoll, E. S. (2004). Regulation of bone mass in mice by the lipoxygenase gene ALOX15. Science 303, 229-232.
25. Knott, S. A., Marklund, L., Haley, C. S., Andersson, K., Davies, W., Ellegren, H., Fredholm, M., Hansson, I., Hoyheim, B., Lundstrom, K., Moller, M. & Andersson, L. (1998). Multiple marker mapping of quantitative trait loci in a cross between outbred wild boar and Large White pigs. Genetics 149, 1069-1080.
26. Ishikawa, A. & Namikawa, T. (2004). Mapping major quantitative trait loci for postnatal growth in an inter-subspecific backcross between C57BL/6J and Philippine wild mice by using principal component analysis. Genes and Genetic Systems 79, 27-39.
27. Ishikawa, A., Matsuda, Y. & Namikawa, T. (2000). Detection of quantitative trait loci for body weight at 10 weeks from Philippine wild mice. Mammalian Genome 11, 824-830.
28. Lander, E. S. & Botstein, D. (1989). Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121, 184-199.
29. Legare, M. E., Bartlett, F. S. & Frankel, W. N. (2000). A major effect QTL determined by multiple genes in epileptic EL mice. Genome Research 10, 42-48.
30. Liang, T., Spence, J., Liu, L., Strother, W. N., Chang, H. W., Ellison, J. A., Lumeng, L., Li, T.-K., Foroud, T. & Carr, L. G. (2003). α-Synuclein maps to a quantitative trait locus for alcohol preference and is differentially expressed in alcohol-preferring and -nonpreferring rats. Proceedings of the National Academy of Sciences of the USA 100, 4690-4695.
31. Manly, K. F., Cudmore, Jr, R. H. & Meer, J. M. (2001). Map Manager QTX, cross-platform software for genetic mapping. Mammalian Genome 12, 930-932.
32. Mather, K. & Jinks J. L. (1977). Introduction to Biometrical Genetics. London, UK: Chapman and Hall.
33. Marshall, K. E., Godden, E. L., Yang, F., Burgers, S., Buck, K. J. & Sikela, J. M. (2002). In silico discovery of gene-coding variants in murine quantitative trait loci using strain-specific genome sequence databases. Genome Biology 3, 1-9.
34. Morris, K. H., Ishikawa, A. & Keightley, P. D. (1999). Quantitative trait loci for growth traits in C57BL/6J X DBA/2J mice. Mammalian Genome 10, 225-228.
35. Nelson, M. R., Kardia, S. L., Ferrell, R. E. & Sing, C. F. (2001). A combinatorial partitioning method to identify multi-locus genotypic partitions that predict quantitative trait variation. Genome Research 11, 458-470.
36. Nishioka, Y. (1995). The origin of common laboratory mice. Genome 38, 1-7.
37. Podolin, P. L., Denny, P., Armitage, N., Lord, C. J., Hill, N. J., Levy, E. R., Peterson, L. B., Todd, J. A., Wicker, L. S. & Lyons, P. A. (1998). Localization of two insulin-dependent diabetes (Idd) genes to the Idd10 region on mouse chromosome 3. Mammalian Genome 9, 283-286.
38. Quintanilla, R., Milan, D. & Bidanel, J.-P. (2002). A further look at quantitative trait loci affecting growth and fatness in a cross between Meishan and Large White pig populations. Genetics Selection Evolution 34, 193-210.
39. Rocha, J. L., Eisen, E. J., van Vleck, L. D. & Pomp, D. (2004). A large-sample QTL study in mice: I. Growth. Mammalian Genome 15, 83-99.
40. Routman, E. J. & Cheverud, J. M. (1997). Gene effects on a quantitative trait: two-locus epistatic effects measured at microsatellite markers and at estimated QTL. Evolution 51, 1654-1662.
41. SAS Institute (2003). JMP User's Guide, Version 5.1. Cary, North Carolina: SAS Institute.
42. Seaton, G. S., Haley, C. S., Knott, S. A., Kearsey, M. & Visscher, M. (2002). QTL express: mapping quantitative trait loci in simple and complex pedigrees. Bioinformatics 18, 339-340.
43. Sen, S. & Churchill, G. A. (2001). A statistical framework for quantitative trait mapping. Genetics 159, 371-387.
44. Snyder, E. E., Walts, B., Perusse, L., Chagnon, Y. C., Weisnagel, S. J., Rankinen, T. & Bouchard, C. (2004). The human obesity gene map: the 2003 update. Obesity Research 12, 369-439.
45. Vaughn, T. T., Pletscher, L. S., Peripato, A., King-Ellison, K., Adams, E., Erikson, C. & Cheverud, J. M. (1999). Mapping quantitative trait loci for murine growth: a closer look at genetic architecture. Genetical Research 74, 313-322.
46. Wang, X. S., Le Roy, I., Nicodeme, E., Li, R. H., Wagner, R., Petros, Churchill, G. A., Harris, S., Darvasi, A., Kirilovsky, J., Roubertoux, P. L. & Paigen, B. (2003). Using advanced intercross line for high-resolution mapping of HDL cholesterol quantitative trait loci. Genome Research 13, 1654-1664.
47. Yi, N., Xu, S. & Allison, D. B. (2003). Bayesian model choice and search strategies for mapping interacting quantitative trait loci. Genetics 165, 867-883.
48. Yi, N., Diament, A., Chiu, S., Kim, K., Allison, D. B., Fisler, J. S. & Warden, C. H. (2004). Characterization of epistasis influencing complex spontaneous obesity in the BSB model. Genetics 167, 399-409.
49. Zeng, Z.-B. (1993). Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proceedings of the National Academy of Sciences of the USA 90, 10972-10976.
50. Zeng, Z.-B. (1994). Precision mapping of quantitative trait loci. Genetics 136, 1457-1468.