메뉴 건너뛰기




Volumn 3, Issue 12, 2002, Pages

In silicodiscovery of gene-coding variants in murine quantitative trait loci using strain-specific genome sequence databases

Author keywords

Allopregnanolone; Ethanol Exposure; Quantitative Trait Locus; Quantitative Trait Locus Interval; Quantitative Trait Locus Region

Indexed keywords

ANIMAL; ARTICLE; BIOLOGY; C57BL MOUSE; CHROMOSOME MAP; CHRONIC DISEASE; DBA MOUSE; EXON; FEMALE; GENETIC DATABASE; GENETIC PREDISPOSITION; GENETIC VARIABILITY; GENETICS; GENOME; HUMAN; MALE; METHODOLOGY; MOUSE; MOUSE STRAIN; QUANTITATIVE TRAIT LOCUS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; WITHDRAWAL SEIZURE;

EID: 0038652120     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2002-3-12-research0078     Document Type: Article
Times cited : (15)

References (44)
  • 1
    • 0026074820 scopus 로고
    • Mendelian factors underlying quantitative traits in tomato: comparison across species, generations, and environments
    • PID: 1673106, COI: 1:STN:280:DyaK3M3gtVKjtA%3D%3D
    • Paterson AH, Damon S, Hewitt JD, Zamir D, Rabinowitch HD, Lincoln SEL, Tanksley SD: Mendelian factors underlying quantitative traits in tomato: comparison across species, generations, and environments. Genetics. 1991, 127: 181-197.
    • (1991) Genetics , vol.127 , pp. 181-197
    • Paterson, A.H.1    Damon, S.2    Hewitt, J.D.3    Zamir, D.4    Rabinowitch, H.D.5    Lincoln, S.E.L.6    Tanksley, S.D.7
  • 2
  • 3
    • 0035230102 scopus 로고    scopus 로고
    • Quantitative trait loci in Drosophila
    • PID: 11253063, COI: 1:CAS:528:DC%2BD3MXisVGjs7w%3D
    • Mackay TF: Quantitative trait loci in Drosophila. Nat Rev Genet. 2001, 2: 11-20. 10.1038/35047544. DOI: 10.1038/35047544
    • (2001) Nat Rev Genet , vol.2 , pp. 11-20
    • Mackay, T.F.1
  • 5
    • 0036175484 scopus 로고    scopus 로고
    • Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition
    • PID: 11827942, COI: 1:CAS:528:DC%2BD38XhtlKksrs%3D
    • Grisart B, Coppieters W, Farnir F, Karim L, Ford C, Berzi P, Cambisano N, Mni M, Reid S, Simon P, et al: Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res. 2002, 12: 222-231. 10.1101/gr.224202. DOI: 10.1101/gr.224202
    • (2002) Genome Res , vol.12 , pp. 222-231
    • Grisart, B.1    Coppieters, W.2    Farnir, F.3    Karim, L.4    Ford, C.5    Berzi, P.6    Cambisano, N.7    Mni, M.8    Reid, S.9    Simon, P.10
  • 6
    • 0033118963 scopus 로고    scopus 로고
    • Identifying genes for alcohol and drug sensitivity: recent progress and future directions
    • PID: 10203855, COI: 1:CAS:528:DyaK1MXitlCrtrk%3D
    • Crabbe JC, Phillips TJ, Buck KJ, Cunningham CL, Belknap JK: Identifying genes for alcohol and drug sensitivity: recent progress and future directions. Trends Neurosci. 1999, 22: 173-9. 10.1016/S0166-2236(99)01393-4. DOI: 10.1016/S0166-2236(99)01393-4
    • (1999) Trends Neurosci , vol.22 , pp. 173-179
    • Crabbe, J.C.1    Phillips, T.J.2    Buck, K.J.3    Cunningham, C.L.4    Belknap, J.K.5
  • 8
    • 0036134391 scopus 로고    scopus 로고
    • Multiple blood pressure QTL on rat Chromosome 2 defined by congenic Dahl rats
    • PID: 11773968, COI: 1:CAS:528:DC%2BD38XjsVWqsg%3D%3D
    • Garrett MR, Rapp JP: Multiple blood pressure QTL on rat Chromosome 2 defined by congenic Dahl rats. Mammalian Genome. 2002, 13: 41-44. 10.1007/s00335-001-2114-y. DOI: 10.1007/s00335-001-2114-y
    • (2002) Mammalian Genome , vol.13 , pp. 41-44
    • Garrett, M.R.1    Rapp, J.P.2
  • 9
    • 0035380102 scopus 로고    scopus 로고
    • Finding the molecular basis of quantitative traits: successes and pitfalls
    • PID: 11389460, COI: 1:CAS:528:DC%2BD3MXktlKqurY%3D
    • Flint J, Mott R: Finding the molecular basis of quantitative traits: successes and pitfalls. Nat Rev Genet. 2001, 2: 437-445. 10.1038/35076585. DOI: 10.1038/35076585
    • (2001) Nat Rev Genet , vol.2 , pp. 437-445
    • Flint, J.1    Mott, R.2
  • 12
    • 0028787946 scopus 로고
    • Aldehyde dehydrogenase activities in the brains of rats and mice genetically selected for different sensitivity to alcohol
    • PID: 8561305, COI: 1:CAS:528:DyaK28XjtVKg
    • Zimatkin SM, Deitrich RA: Aldehyde dehydrogenase activities in the brains of rats and mice genetically selected for different sensitivity to alcohol. Alcohol Clin Exp Res. 1995, 19: 1300-1306. DOI: 10.1111/j.1530-0277.1995.tb01615.x
    • (1995) Alcohol Clin Exp Res , vol.19 , pp. 1300-1306
    • Zimatkin, S.M.1    Deitrich, R.A.2
  • 14
    • 0037204994 scopus 로고    scopus 로고
    • A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome
    • PID: 12040188, COI: 1:CAS:528:DC%2BD38XktlChu7k%3D
    • Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, Sutton GG, Nadeau J, et al: A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science. 2002, 296: 1661-1671. 10.1126/science.1069193. DOI: 10.1126/science.1069193
    • (2002) Science , vol.296 , pp. 1661-1671
    • Mural, R.J.1    Adams, M.D.2    Myers, E.W.3    Smith, H.O.4    Miklos, G.L.5    Wides, R.6    Halpern, A.7    Li, P.W.8    Sutton, G.G.9    Nadeau, J.10
  • 16
    • 0036205207 scopus 로고    scopus 로고
    • Mapping murine loci for physical dependence on ethanol
    • PID: 11919667, COI: 1:CAS:528:DC%2BD38XktFGhsb4%3D
    • Buck KJ, Rademacher BS, Metten P, Crabbe JC: Mapping murine loci for physical dependence on ethanol. Psychopharmacology. 2002, 160: 398-407. 10.1007/s00213-001-0988-8. DOI: 10.1007/s00213-001-0988-8
    • (2002) Psychopharmacology , vol.160 , pp. 398-407
    • Buck, K.J.1    Rademacher, B.S.2    Metten, P.3    Crabbe, J.C.4
  • 17
    • 0031819667 scopus 로고    scopus 로고
    • Provisional mapping of quantitative trait loci for chronic ethanol withdrawal severity in BXD recombinant inbred mice
    • PID: 9655868, COI: 1:CAS:528:DyaK1cXksFCgsr8%3D
    • Crabbe JC: Provisional mapping of quantitative trait loci for chronic ethanol withdrawal severity in BXD recombinant inbred mice. J Pharmacol Exp Ther. 1998, 286: 263-271.
    • (1998) J Pharmacol Exp Ther , vol.286 , pp. 263-271
    • Crabbe, J.C.1
  • 18
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • PID: 2231712, COI: 1:CAS:528:DyaK3MXitVGmsA%3D%3D
    • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215: 403-410. 10.1006/jmbi.1990.9999. DOI: 10.1016/S0022-2836(05)80360-2
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 20
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • PID: 9521921, COI: 1:CAS:528:DyaK1cXitlWlu78%3D
    • Ewing B, Hillier L, Wendl MC, Green P: Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8: 175-185. DOI: 10.1101/gr.8.3.175
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 21
    • 0031037720 scopus 로고    scopus 로고
    • Chronic ethanol ingestion produces cholinergic hypofunction in rat brain
    • PID: 9014029, COI: 1:CAS:528:DyaK2sXhtV2itbg%3D
    • Floyd EA, Young-Seigler AC, Ford BD, Reasor JD, Moore EL, Townsel JG, Rucker HK: Chronic ethanol ingestion produces cholinergic hypofunction in rat brain. Alcohol. 1997, 14: 93-98. 10.1016/S0741-8329(97)86147-2. DOI: 10.1016/S0741-8329(97)86147-2
    • (1997) Alcohol , vol.14 , pp. 93-98
    • Floyd, E.A.1    Young-Seigler, A.C.2    Ford, B.D.3    Reasor, J.D.4    Moore, E.L.5    Townsel, J.G.6    Rucker, H.K.7
  • 22
    • 0025223211 scopus 로고
    • Inhibition of choline transport in erythrocytes by n-alkanols
    • PID: 2265191, COI: 1:CAS:528:DyaK3MXlsFKksQ%3D%3D
    • Deves R, Krupka RM: Inhibition of choline transport in erythrocytes by n-alkanols. Biochim Biophys Acta. 1990, 1030: 32-40. DOI: 10.1016/0005-2736(90)90235-G
    • (1990) Biochim Biophys Acta , vol.1030 , pp. 32-40
    • Deves, R.1    Krupka, R.M.2
  • 23
    • 0026603924 scopus 로고
    • The 5 alpha-reductase in the brain: molecular aspects and relation to brain function
    • PID: 1468601, COI: 1:STN:280:DyaK3s7gs1aquw%3D%3D
    • Celotti F, Melcangi RC, Martini L: The 5 alpha-reductase in the brain: molecular aspects and relation to brain function. Front Neuroendocrinol. 1992, 13: 163-215.
    • (1992) Front Neuroendocrinol , vol.13 , pp. 163-215
    • Celotti, F.1    Melcangi, R.C.2    Martini, L.3
  • 24
    • 0030788747 scopus 로고    scopus 로고
    • The cerebral cortex is damaged in chronic alcoholics
    • PID: 9219961, COI: 1:CAS:528:DyaK2sXksVCktLs%3D
    • Kril JJ, Halliday GM, Svoboda MD, Cartwright H: The cerebral cortex is damaged in chronic alcoholics. Neuroscience. 1997, 79: 983-998. 10.1016/S0306-4522(97)00083-3. DOI: 10.1016/S0306-4522(97)00083-3
    • (1997) Neuroscience , vol.79 , pp. 983-998
    • Kril, J.J.1    Halliday, G.M.2    Svoboda, M.D.3    Cartwright, H.4
  • 26
    • 0029852074 scopus 로고    scopus 로고
    • Areceptor function and expression, and their relevance to behavior
    • PID: 8947265, COI: 1:STN:280:DyaK2s7gt1yqsQ%3D%3D
    • A receptor function and expression, and their relevance to behavior. Alcohol Clin Exp Res. 1996, 20: 198A-202A. DOI: 10.1111/j.1530-0277.1996.tb01776.x
    • (1996) Alcohol Clin Exp Res , vol.20 , pp. 198A-202A
    • Buck, K.J.1
  • 27
    • 0026579057 scopus 로고
    • Neuroactive steroids
    • PID: 1347506, COI: 1:CAS:528:DyaK38XhvVyisb4%3D
    • Paul SM, Purdy RH: Neuroactive steroids. FASEB J. 1992, 6: 2311-2322.
    • (1992) FASEB J , vol.6 , pp. 2311-2322
    • Paul, S.M.1    Purdy, R.H.2
  • 28
    • 0033985309 scopus 로고    scopus 로고
    • Differential change in neuroactive steroid sensitivity during ethanol withdrawal
    • PID: 10604976, COI: 1:CAS:528:DC%2BD3cXhslGqsg%3D%3D
    • Finn DA, Gallaher EJ, Crabbe JC: Differential change in neuroactive steroid sensitivity during ethanol withdrawal. J Pharmacol Exp Ther. 2000, 292: 394-405.
    • (2000) J Pharmacol Exp Ther , vol.292 , pp. 394-405
    • Finn, D.A.1    Gallaher, E.J.2    Crabbe, J.C.3
  • 29
    • 0035960903 scopus 로고    scopus 로고
    • Strain-specific complementation between NRIF1 and NRIF2, two zinc finger proteins sharing structural and biochemical properties
    • PID: 11750124, COI: 1:CAS:528:DC%2BD3MXptFelsLw%3D
    • Benzel I, Barde YA, Casademunt E: Strain-specific complementation between NRIF1 and NRIF2, two zinc finger proteins sharing structural and biochemical properties. Gene. 2001, 281: 19-30. 10.1016/S0378-1119(01)00730-2. DOI: 10.1016/S0378-1119(01)00730-2
    • (2001) Gene , vol.281 , pp. 19-30
    • Benzel, I.1    Barde, Y.A.2    Casademunt, E.3
  • 30
    • 0030609848 scopus 로고    scopus 로고
    • Sequence of mouse 17beta-hydroxysteroid dehydrogenase type 3 cDNA and tissue distribution of the type 1 and type 3 isoform mRNAs
    • PID: 9182854, COI: 1:CAS:528:DyaK2sXjvVGrsbY%3D
    • Sha JA, Dudley K, Rajapaksha WR, O'Shaughnessy PJ: Sequence of mouse 17beta-hydroxysteroid dehydrogenase type 3 cDNA and tissue distribution of the type 1 and type 3 isoform mRNAs. J Steroid Biochem Mol Biol. 1997, 60: 19-24. 10.1016/S0960-0760(96)00165-3. DOI: 10.1016/S0960-0760(96)00165-3
    • (1997) J Steroid Biochem Mol Biol , vol.60 , pp. 19-24
    • Sha, J.A.1    Dudley, K.2    Rajapaksha, W.R.3    O'Shaughnessy, P.J.4
  • 31
    • 0029593494 scopus 로고
    • Characteristics of human types 1, 2 and 3 17 beta-hydroxysteroid dehydrogenase activities: oxidation/reduction and inhibition
    • PID: 8547185, COI: 1:CAS:528:DyaK28Xkt1SisQ%3D%3D
    • Luu-The V, Zhang Y, Poirier D, Labrie F: Characteristics of human types 1, 2 and 3 17 beta-hydroxysteroid dehydrogenase activities: oxidation/reduction and inhibition. J Steroid Biochem Mol Biol. 1995, 55: 581-587. 10.1016/0960-0760(95)00209-X. DOI: 10.1016/0960-0760(95)00209-X
    • (1995) J Steroid Biochem Mol Biol , vol.55 , pp. 581-587
    • Luu-The, V.1    Zhang, Y.2    Poirier, D.3    Labrie, F.4
  • 32
    • 0023253638 scopus 로고
    • Inhibition of testosterone biosynthesis by ethanol: multiple sites and mechanisms in dispersed Leydig cells
    • PID: 3476810, COI: 1:CAS:528:DyaL2sXlsV2jtLs%3D
    • Widenius TV, Orava MM, Vihko RK, Ylikahri RH, Eriksson CJ: Inhibition of testosterone biosynthesis by ethanol: multiple sites and mechanisms in dispersed Leydig cells. J Steroid Biochem. 1987, 28: 185-188. 10.1016/0022-4731(87)90375-X. DOI: 10.1016/0022-4731(87)90375-X
    • (1987) J Steroid Biochem , vol.28 , pp. 185-188
    • Widenius, T.V.1    Orava, M.M.2    Vihko, R.K.3    Ylikahri, R.H.4    Eriksson, C.J.5
  • 33
    • 0036584950 scopus 로고    scopus 로고
    • Congenic mapping of alcohol and pentobarbitol withdrawal liability quantitative trait loci to a <1 cM region of mouse chromosome 4: identification of Mpdz as a candidate gene
    • PID: 11978849, COI: 1:CAS:528:DC%2BD38Xjs1SlsrY%3D
    • Fehr C, Shirley RL, Belknap JK, Crabbe JC, Buck K: Congenic mapping of alcohol and pentobarbitol withdrawal liability quantitative trait loci to a <1 cM region of mouse chromosome 4: identification of Mpdz as a candidate gene. J Neurosci. 2002, 22: 3730-3738.
    • (2002) J Neurosci , vol.22 , pp. 3730-3738
    • Fehr, C.1    Shirley, R.L.2    Belknap, J.K.3    Crabbe, J.C.4    Buck, K.5
  • 34
    • 0033369916 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of molecular polymorphisms at the scabrous locus associated with naturally occurring variation in bristle number in Drosophila melanogaster
    • PID: 10689806, COI: 1:CAS:528:DC%2BD3cXhs1GrtbY%3D
    • Lyman RF, Lai C, Mackay TF: Linkage disequilibrium mapping of molecular polymorphisms at the scabrous locus associated with naturally occurring variation in bristle number in Drosophila melanogaster. Genet Res. 1999, 74: 303-311. 10.1017/S001667239900419X. DOI: 10.1017/S001667239900419X
    • (1999) Genet Res , vol.74 , pp. 303-311
    • Lyman, R.F.1    Lai, C.2    Mackay, T.F.3
  • 35
    • 0033580401 scopus 로고    scopus 로고
    • The limits of selection during maize domestication
    • PID: 10094045, COI: 1:CAS:528:DyaK1MXitVGkt7g%3D
    • Wang RL, Stec A, Hey J, Lukens L, Doebley J: The limits of selection during maize domestication. Nature. 1999, 398: 236-239. 10.1038/18435. DOI: 10.1038/18435
    • (1999) Nature , vol.398 , pp. 236-239
    • Wang, R.L.1    Stec, A.2    Hey, J.3    Lukens, L.4    Doebley, J.5
  • 37
    • 0033655171 scopus 로고    scopus 로고
    • ANN-Spec: a method for discovering transcription factor binding sites with improved specificity
    • Workman CT, Stormo GD: ANN-Spec: a method for discovering transcription factor binding sites with improved specificity. Pac Symp Biocomput. 2000, 467-478.
    • (2000) Pac Symp Biocomput , pp. 467-478
    • Workman, C.T.1    Stormo, G.D.2
  • 38
    • 0031087023 scopus 로고    scopus 로고
    • Interval-specific congenic strains (ISCS): an experimental design for mapping a QTL into a 1-centimorgan interval
    • PID: 9069114, COI: 1:CAS:528:DyaK2sXit1aqurg%3D
    • Darvasi A: Interval-specific congenic strains (ISCS): an experimental design for mapping a QTL into a 1-centimorgan interval. Mammalian Genome. 1997, 8: 163-167. 10.1007/s003359900382. DOI: 10.1007/s003359900382
    • (1997) Mammalian Genome , vol.8 , pp. 163-167
    • Darvasi, A.1
  • 43
    • 85182639906 scopus 로고    scopus 로고
    • Primer3. [http://www-genome.wi.mit.edu/cgi-bin/primer/primer3_www.cgi]
    • Primer3
  • 44
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • PID: 9521923, COI: 1:CAS:528:DyaK1cXitlWksr0%3D
    • Gordon D, Abajian C, Green P: Consed: a graphical tool for sequence finishing. Genome Res. 1998, 8: 195-202. DOI: 10.1101/gr.8.3.195
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.