An antibody library for stabilizing and crystallizing membrane proteins - Selecting binders to the citrate carrier CitS

FEBS Letters

Volumn 564, Issue 3, 2004, Pages 340-348

  Röthlisberger, Daniela ^a   Pos, Klaas Martinus ^b   Plückthun, Andreas ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b ETH ZURICH   (Switzerland)

Author keywords

Antibody library; BAD, biotin acceptor domain; CDR, complementary determining region; Co crystallization; ELISA, enzyme linked immunosorbent assay; Membrane protein; Phage display; V H VL, variable domains of the heavy and light chain

Indexed keywords

ANTIBODY; CARRIER PROTEIN; CITRIC ACID; DETERGENT; EPITOPE; IMMUNOGLOBULIN F(AB) FRAGMENT; MEMBRANE PROTEIN;

ANTIBODY LIBRARY; CONFERENCE PAPER; CRYSTAL; CRYSTALLIZATION; CRYSTALLOGRAPHY; ENZYME LINKED IMMUNOSORBENT ASSAY; EVALUATION; HYDROPHILICITY; IMMOBILIZATION; KLEBSIELLA PNEUMONIAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHAGE DISPLAY; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN TRANSPORT;

BACTERIAL PROTEINS; CARRIER PROTEINS; CRYSTALLIZATION; ENZYME-LINKED IMMUNOSORBENT ASSAY; IMMUNOGLOBULIN FAB FRAGMENTS; KLEBSIELLA PNEUMONIAE; MEMBRANE PROTEINS; PEPTIDE LIBRARY; PROTEIN BINDING; PROTEIN CONFORMATION;

KLEBSIELLA; KLEBSIELLA PNEUMONIAE;

EID: 1942436325     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(04)00359-X     Document Type: Conference Paper

References (75)

1. Iwata S., Ostermeier C., Ludwig B., Michel H. Nature. 376:1995;660-669.
2. Ostermeier C., Harrenga A., Ermler U., Michel H. Proc. Natl. Acad. Sci. USA. 94:1997;10547-10553.
3. Harrenga A., Michel H. J. Biol. Chem. 274:1999;33296-33299.
4. Hunte C., Koepke J., Lange C., Rossmanith T., Michel H. Struct. Fold. Des. 8:2000;669-684.
5. Zhou Y., Morais-Cabral J.H., Kaufman A., MacKinnon R. Nature. 414:2001;43-48.
6. Dutzler R., Campbell E.B., MacKinnon R. Science. 300:2003;108-112.
7. Lange C., Hunte C. Proc. Natl. Acad. Sci. USA. 99:2002;2800-2805.
8. Winter G., Griffiths A.D., Hawkins R.E., Hoogenboom H.R. Annu. Rev. Immunol. 12:1994;433-455.
9. Plückthun, A. et al. (1996) in: Antibody Engineering (McCafferty, J., Hoogenboom, H.R. and Chiswell, D.J., Eds.), IRL Press, Oxford.
10. Winter G. FEBS Lett. 430:1998;92-94.
11. Schaffitzel C., Hanes J., Jermutus L., Plückthun A. J. Immunol. Methods. 231:1999;119-135.
12. Hamers-Casterman C., Atarhouch T., Muyldermans S., Robinson G., Hamers C., Songa E.B., Bendahman N., Hamers R. Nature. 363:1993;446-448.
13. Arbabi Ghahroudi M., Desmyter A., Wyns L., Hamers R., Muyldermans S. FEBS Lett. 414:1997;521-526.
14. Lauwereys M., Arbabi Ghahroudi M., Desmyter A., Kinne J., Holzer W., De Genst E., Wyns L., Muyldermans S. EMBO J. 17:1998;3512-3520.
15. Muyldermans S. J. Biotechnol. 74:2001;277-302.
16. Ewert S., Cambillau C., Conrath K., Plückthun A. Biochemistry. 41:2002;3628-3636.
17. Holt L.J., Herring C., Jespers L.S., Woolven B.P., Tomlinson I.M. Trends Biotechnol. 21:2003;484-490.
18. Skerra A., Plückthun A. Science. 240:1988;1038-1041.
19. Bird R.E., et al. Science. 242:1988;423-426.
20. Huston J.S., et al. Proc. Natl. Acad. Sci. USA. 85:1988;5879-5883.
21. Glockshuber R., Malia M., Pfitzinger I., Plückthun A. Biochemistry. 29:1990;1362-1367.
22. Ay J., Keitel T., Kuttner G., Wessner H., Scholz C., Hahn M., Höhne W. J. Mol. Biol. 301:2000;239-246.
23. Boehm M.K., et al. Biochem. J. 346:2000;519-528.
24. Kaufmann M., Lindner P., Honegger A., Blank K., Tschopp M., Capitani G., Plückthun A., Grütter M.G. J. Mol. Biol. 318:2002;135-147.
25. Pelletier J.N., Arndt K.M., Plückthun A., Michnick S.W. Nat. Biotechnol. 17:1999;683-690.
26. Fields S., Song O. Nature. 340:1989;245-246.
27. Smith G.P. Science. 228:1985;1315-1317.
28. Hanes J., Plückthun A. Proc. Natl. Acad. Sci. USA. 94:1997;4937-4942.
29. Lolkema J.S., Enequist H., van der Rest M.E. Eur. J. Biochem. 220:1994;469-475.
30. Pos K.M., Dimroth P. Biochemistry. 35:1996;1018-1026.
31. Kästner C.N., Prummer M., Sick B., Renn A., Wild U.P., Dimroth P. Biophys. J. 84:2003;1651-1659.
32. Sobczak I., Lolkema J.S. Biochemistry. 42:2003;9789-9796.
33. van Geest M., Lolkema J.S. Biochim. Biophys. Acta. 1466:2000;328-338.
34. Pos K.M., Bott M., Dimroth P. FEBS Lett. 347:1994;37-41.
35. Kästner C.N., Dimroth P., Pos K.M. Arch. Microbiol. 174:2000;67-73.
36. Woodcock D.M., et al. Nucleic Acids Res. 17:1989;3469-3478.
37. Miroux B., Walker J.E. J. Mol. Biol. 260:1996;289-298.
38. Rauchenberger R., et al. J. Biol. Chem. 278:2003;38194-38205.
39. Ewert S., Huber T., Honegger A., Plückthun A. J. Mol. Biol. 325:2003;531-553.
40. Gill S.C., von Hippel P.H. Anal. Biochem. 182:1989;319-326.
41. Carter P., Bedouelle H., Winter G. Nucleic Acids Res. 13:1985;4431-4443.
42. Rowe E.S. Biochemistry. 15:1976;905-916.
43. Lilie H., Jaenicke R., Buchner J. Protein Sci. 4:1995;917-924.
44. Karlsson R. Anal. Biochem. 221:1994;142-151.
45. Nieba L., Krebber A., Plückthun A. Anal. Biochem. 234:1996;155-165.
46. Hanes J., Jermutus L., Weber-Bornhauser S., Bosshard H.R., Plückthun A. Proc. Natl. Acad. Sci. USA. 95:1998;14130-14135.
47. Knappik A., et al. J. Mol. Biol. 296:2000;57-86.
48. Virnekäs B., Ge L., Plückthun A., Schneider K.C., Wellnhofer G., Moroney S.E. Nucleic Acids Res. 22:1994;5600-5607.
49. Kretzschmar T., von Rüden T. Curr. Opin. Biotechnol. 13:2002;598-602.
50. Barbas C.F., Kang A.S. 3rd, Lerner R.A., Benkovic S.J. Proc. Natl. Acad. Sci. USA. 88:1991;7978-7982.
51. Hoogenboom H.R., de Bruine A.P., Hufton S.E., Hoet R.M., Arends J.W., Roovers R.C. Immunotechnology. 4:1998;1-20.
52. Marget M., et al. Tissue Antigens. 56:2000;1-9.
53. Topping K.P., Hough V.C., Monson J.R., Greenman J. Int. J. Oncol. 16:2000;187-195.
54. Shadidi M., Sioud M. Biochem. Biophys. Res. Commun. 280:2001;548-552.
55. Sui J., Bai J., St Clair Tallarico A., Xu C., Marasco W.A. Eur. J. Biochem. 270:2003;4497-4506.
56. Hoogenboom H.R., et al. Eur. J. Biochem. 260:1999;774-784.
57. Mutuberria R., Hoogenboom H.R., van der Linden E., de Bruine A.P., Roovers R.C. J. Immunol. Methods. 231:1999;65-81.
58. Jespersen L.K., Kuusinen A., Orellana A., Keinanen K., Engberg J. Eur. J. Biochem. 267:2000;1382-1389.
59. Mirzabekov T., Kontos H., Farzan M., Marasco W., Sodroski J. Nat. Biotechnol. 18:2000;649-654.
60. Dierks T., Krämer R. Biochim. Biophys. Acta. 937:1988;112-126.
61. Jung H., Tebbe S., Schmid R., Jung K. Biochemistry. 37:1998;11083-11088.
62. Knol J., Sjollema K., Poolman B. Biochemistry. 37:1998;16410-16415.
63. Gioannini T.L., Howard A.D., Hiller J.M., Simon E.J. J. Biol. Chem. 260:1985;15117-15121.
64. Tucker J., Grisshammer R. Biochem. J. 317:1996;891-899.
65. Callaghan R., Berridge G., Ferry D.R., Higgins C.F. Biochim. Biophys. Acta. 1328:1997;109-124.
66. Mirzabekov T., Bannert N., Farzan M., Hofmann W., Kolchinsky P., Wu L., Wyatt R., Sodroski J. J. Biol. Chem. 274:1999;28745-28750.
67. Reich-Slotky R., Panagiotidis C., Reyes M., Shuman H.A. J. Bacteriol. 182:2000;993-1000.
68. Neumann L., Wohland T., Whelan R.J., Zare R.N., Kobilka B.K. Chembiochem. 3:2002;993-998.
69. Hoogenboom H.R. Trends Biotechnol. 15:1997;62-70.
70. Sheets M.D., et al. Proc. Natl. Acad. Sci. USA. 95:1998;6157-6162.
71. Steinhauer, C., Wingren, C., Hager, A.C. and Borrebaeck, C.A. (2002) Biotechniques Suppl., 38-45.
72. Venturi M., Hunte C. Biochim. Biophys. Acta. 1610:2003;46-50.
73. Jung S., Honegger A., Plückthun A. J. Mol. Biol. 294:1999;163-180.
74. Desiderio A., et al. J. Mol. Biol. 310:2001;603-615.
75. Ewert S., Honegger A., Plückthun A. Biochemistry. 42:2003;1517-1528.