메뉴 건너뛰기




Volumn 169, Issue 2, 2005, Pages 891-906

Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; B1 GENE; CHROMOSOME STRUCTURE; DNA CONTENT; EVOLUTION; GENE; GENE AMPLIFICATION; GENE DELETION; GENE DUPLICATION; GENE INSERTION; GENETIC LINKAGE; GENOME IMPRINTING; MAIZE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; R1 GENE; RICE; SORGHUM; STRUCTURE ANALYSIS; UNINDEXED SEQUENCE;

EID: 14744275063     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.104.034629     Document Type: Article
Times cited : (47)

References (97)
  • 1
    • 0345071423 scopus 로고    scopus 로고
    • Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
    • ADAMS, K. L., R. CRONN, R. PERCIFIELD andJ. F. WENDEL, 2003 Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc. Natl. Acad. Sci. USA 100: 4649-4654.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 4649-4654
    • Adams, K.L.1    Cronn, R.2    Percifield, R.3    Wendel, J.F.4
  • 2
    • 0027261431 scopus 로고
    • Comparative linkage maps of the rice and maize genomes
    • AHN, S., and S. D. TANKSLEY, 1993 Comparative linkage maps of the rice and maize genomes. Proc. Natl. Acad. Sci. USA 90: 7980-7984.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7980-7984
    • Ahn, S.1    Tanksley, S.D.2
  • 3
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PS1-BLAST: A new generation of protein database search programs
    • ALTSCHUL, S. F., T. L. MADDEN, A. A. SCHAFFER, J. ZHANG, Z. ZHANG et al., 1997 Gapped BLAST and PS1-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 5
    • 0033805245 scopus 로고    scopus 로고
    • Nuclear DNA amounts in angiosperms and their modern uses: 807 New estimates
    • BENNETT, M. D., P. BHANDOL and I. J. LEICHT, 2000 Nuclear DNA amounts in angiosperms and their modern uses: 807 new estimates. Ann. Bot. 86: 859-909.
    • (2000) Ann. Bot. , vol.86 , pp. 859-909
    • Bennett, M.D.1    Bhandol, P.2    Leicht, I.J.3
  • 6
    • 0001399988 scopus 로고
    • Transient gene expression in vegetative shoot apical meristems of wheat after ballistic microtargeting
    • BILANG, R., S. ZHANG, N. LEDUC, V. A. IGLESIAS, A. GISEL et al., 1993 Transient gene expression in vegetative shoot apical meristems of wheat after ballistic microtargeting. Plant J. 4: 735-744.
    • (1993) Plant J. , vol.4 , pp. 735-744
    • Bilang, R.1    Zhang, S.2    Leduc, N.3    Iglesias, V.A.4    Gisel, A.5
  • 7
    • 0026762336 scopus 로고
    • Regulated transcription of the maize Bronze-2 promoter in electroporated protoplasts requires the C1 and R gene products
    • BODEAU, J. P., and V. WALBOT, 1992 Regulated transcription of the maize Bronze-2 promoter in electroporated protoplasts requires the C1 and R gene products. Mol. Gen. Genet. 233: 379-387.
    • (1992) Mol. Gen. Genet. , vol.233 , pp. 379-387
    • Bodeau, J.P.1    Walbot, V.2
  • 8
    • 85047671892 scopus 로고    scopus 로고
    • Plant transmembrane receptors: New pieces in the signaling puzzle
    • BRAUN, D. M., and J. C. WALKER, 1996 Plant transmembrane receptors: new pieces in the signaling puzzle. Trends Bio. Sci. 21: 70-73.
    • (1996) Trends Bio. Sci. , vol.21 , pp. 70-73
    • Braun, D.M.1    Walker, J.C.2
  • 9
    • 0037967214 scopus 로고    scopus 로고
    • A large rearrangement involving genes and low-copy DNA interrupts the microcollinearity between rice and barley at the Rph7 locus
    • BRUNNER, S., B. RELLER and C. FEUILLET, 2003 A large rearrangement involving genes and low-copy DNA interrupts the microcollinearity between rice and barley at the Rph7 locus. Genetics 164: 673-683.
    • (2003) Genetics , vol.164 , pp. 673-683
    • Brunner, S.1    Reller, B.2    Feuillet, C.3
  • 11
    • 0024773335 scopus 로고
    • Two regulatory genes of the maize anthocyanin pathway are homologous: Isolation of B utilizing R genomic sequences
    • CHANDLER, V. L., J. P. RADICELLA, T. P. ROBBINS, J. CHEN and D. TURKS, 1989 Two regulatory genes of the maize anthocyanin pathway are homologous: isolation of B utilizing R genomic sequences. Plant Cell 1: 1175-1183.
    • (1989) Plant Cell , vol.1 , pp. 1175-1183
    • Chandler, V.L.1    Radicella, J.P.2    Robbins, T.P.3    Chen, J.4    Turks, D.5
  • 13
    • 0031908204 scopus 로고    scopus 로고
    • Sequence organization and conservation in sh2/a1-homologous region of sorghum and rice
    • CHEN, M., P. SANMIGUEL and J. L. BENNETZEN, 1998 Sequence organization and conservation in sh2/a1-homologous region of sorghum and rice. Genetics 148: 435-443.
    • (1998) Genetics , vol.148 , pp. 435-443
    • Chen, M.1    Sanmiguel, P.2    Bennetzen, J.L.3
  • 14
    • 0023020205 scopus 로고
    • Molecular analysis of the maize anthocyanin regulatory locus C1
    • CONE, K. C., F. A. BURR and B. BURR, 1986 Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. USA 83: 9631-9635.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 9631-9635
    • Cone, K.C.1    Burr, F.A.2    Burr, B.3
  • 16
    • 0033452727 scopus 로고    scopus 로고
    • Duplicated genes evolve independently after polyploid formation in cotton
    • CRONN, R. C., R. L. SMALL and J. F. WENDEL, 1999 Duplicated genes evolve independently after polyploid formation in cotton. Proc. Natl. Acad. Sci. USA 96: 14406-14411.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 14406-14411
    • Cronn, R.C.1    Small, R.L.2    Wendel, J.F.3
  • 18
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • DEVEREUX, J., P. HAEBERLI and O. SMITHIES, 1984 A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12: 387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 19
    • 0000920186 scopus 로고
    • Coordinate genetic regulation of flavonoid biosynthetic enzymes in maize
    • DOONER, H. K., 1983 Coordinate genetic regulation of flavonoid biosynthetic enzymes in maize. Mol. Gen. Genet. 189: 136-141.
    • (1983) Mol. Gen. Genet. , vol.189 , pp. 136-141
    • Dooner, H.K.1
  • 20
    • 0017283007 scopus 로고
    • Displaced and tandem duplications in the long arm of chromosome 10 in maize
    • DOONER, H. K., and J. L. KERMICLE, 1976 Displaced and tandem duplications in the long arm of chromosome 10 in maize. Genetics 82: 309-322.
    • (1976) Genetics , vol.82 , pp. 309-322
    • Dooner, H.K.1    Kermicle, J.L.2
  • 21
    • 0026326053 scopus 로고
    • Genetic and developmental control of anthocyanin biosynthesis
    • DOONER, H. K., T. P. ROBBINS and R. A. JORGENSEN, 1991 Genetic and developmental control of anthocyanin biosynthesis. Annu. Rev. Genet. 25: 173-199.
    • (1991) Annu. Rev. Genet. , vol.25 , pp. 173-199
    • Dooner, H.K.1    Robbins, T.P.2    Jorgensen, R.A.3
  • 24
    • 0000461280 scopus 로고
    • Confidence limits on phytogenies: An approach using the bootstrap
    • FELSENSTEIN, J., 1985 Confidence limits on phytogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 25
    • 0037153127 scopus 로고    scopus 로고
    • Sequence and analysis of rice chromosome 4
    • FENG, Q., Y. ZHANG, P. HAO, S. WANG, G. FU et al., 2002 Sequence and analysis of rice chromosome 4. Nature 420: 316-320.
    • (2002) Nature , vol.420 , pp. 316-320
    • Feng, Q.1    Zhang, Y.2    Hao, P.3    Wang, S.4    Fu, G.5
  • 26
    • 0033529227 scopus 로고    scopus 로고
    • High gene density is conserved at syntenic loci of small and large grass genomes
    • FEUILLET, C., and B. KELLER, 1999 High gene density is conserved at syntenic loci of small and large grass genomes. Proc. Natl. Acad. Sci. USA 96: 8265-S270.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96
    • Feuillet, C.1    Keller, B.2
  • 27
    • 0036043201 scopus 로고    scopus 로고
    • Comparative genomics in the grass family: Molecular characterization of grass genome structure and evolution
    • FEUILLET, C., and B. KELLER, 2002 Comparative genomics in the grass family: molecular characterization of grass genome structure and evolution. Ann. Bot. 89: 3-10.
    • (2002) Ann. Bot. , vol.89 , pp. 3-10
    • Feuillet, C.1    Keller, B.2
  • 28
    • 0037047037 scopus 로고    scopus 로고
    • Intraspecific violation of genetic colinearity and its implication in maize
    • FU, H., and H. K. DOONER, 2002 Intraspecific violation of genetic colinearity and its implication in maize. Proc. Natl. Acad. Sci. USA 99: 9573-9578.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 9573-9578
    • Fu, H.1    Dooner, H.K.2
  • 29
    • 0032478340 scopus 로고    scopus 로고
    • Comparative genetics in the grasses
    • GALE, M. D., and K. M. DEVOS, 1998 Comparative genetics in the grasses. Proc. Natl. Acad. Sci. USA 95: 1971-1974.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1971-1974
    • Gale, M.D.1    Devos, K.M.2
  • 30
    • 0028582006 scopus 로고
    • The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root
    • GALWAY, M. E., J. D. MASUGGI, A. M. LLOYD, V. WALBOT, R. W. DAVIS et al., 1994 The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root. Dev. Biol. 166: 740-754.
    • (1994) Dev. Biol. , vol.166 , pp. 740-754
    • Galway, M.E.1    Masuggi, J.D.2    Lloyd, A.M.3    Walbot, V.4    Davis, R.W.5
  • 31
    • 0030959648 scopus 로고    scopus 로고
    • DNA sequence evidence for the segmental allotetraploid origin of maize
    • GAUT, B. S., and J. F. DOEBLEY, 1997 DNA sequence evidence for the segmental allotetraploid origin of maize. Proc. Natl. Acad. Sci. USA 94: 6809-6814.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6809-6814
    • Gaut, B.S.1    Doebley, J.F.2
  • 32
    • 0025196268 scopus 로고
    • Sn, a light-dependent and tissue-specific gene of maize: The genetic basis of its instability
    • GAVAZZI, G., M. MEREGHETTI, G. CONSONNI and C. TONELLI, 1990 Sn, a light-dependent and tissue-specific gene of maize: the genetic basis of its instability. Genetics 125: 193-199.
    • (1990) Genetics , vol.125 , pp. 193-199
    • Gavazzi, G.1    Mereghetti, M.2    Consonni, G.3    Tonelli, C.4
  • 33
    • 0025307383 scopus 로고
    • Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues
    • GOFF, S. A., T. M. KLEIN, B. A. ROTH, M. E. FROMM, K. C. CONE et al., 1990 Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues. EMBO J. 9: 2517-2522.
    • (1990) EMBO J. , vol.9 , pp. 2517-2522
    • Goff, S.A.1    Klein, T.M.2    Roth, B.A.3    Fromm, M.E.4    Cone, K.C.5
  • 34
    • 0026073575 scopus 로고
    • Identification of functional domains in the maize activator C1: Comparison of wildtype and dominant inhibitor proteins
    • GOFF, S. A., K. C. CONE and M. E. FROMM, 1991 Identification of functional domains in the maize activator C1: comparison of wildtype and dominant inhibitor proteins. Genes Dev. 5: 298-309.
    • (1991) Genes Dev. , vol.5 , pp. 298-309
    • Goff, S.A.1    Cone, K.C.2    Fromm, M.E.3
  • 35
    • 0026638942 scopus 로고
    • Functional analysis of the transcriptional activator encoded by the maize B gene: Evidence for a direct functional interaction between two classes of regulatory proteins
    • GOFF, S. A., K. C. CONE and V. L. CHANDLER, 1992 Functional analysis of the transcriptional activator encoded by the maize B gene: evidence for a direct functional interaction between two classes of regulatory proteins. Genes Dev. 6: 864-875.
    • (1992) Genes Dev. , vol.6 , pp. 864-875
    • Goff, S.A.1    Cone, K.C.2    Chandler, V.L.3
  • 36
    • 0037023349 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza saliva L. ssp. japonica)
    • GOFF, S. A., D. RICKE, T.-H. HAN, G. PRESTING, R. WANG et al., 2002 A draft sequence of the rice genome (Oryza saliva L. ssp. japonica). Science 296: 92-100.
    • (2002) Science , vol.296 , pp. 92-100
    • Goff, S.A.1    Ricke, D.2    Han, T.-H.3    Presting, G.4    Wang, R.5
  • 37
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • GOLDMAN, N., and Z. YANG, 1994 A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11: 725-736.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 38
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • GORDON, D., C. ABAJIAN and P. GREEN, 1998 Consed: a graphical tool for sequence finishing. Genome Res. 8: 195-202.
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 39
    • 0031772791 scopus 로고    scopus 로고
    • Engineering secondary metabolism in maize cells by ectopic expression of transcription factors
    • GROTEWOLD, E., M. CHAMBERLIN, M. SNOOK, B. SIAME, L. BUTLER et al., 1998 Engineering secondary metabolism in maize cells by ectopic expression of transcription factors. Plant Cell 10: 721-740.
    • (1998) Plant Cell , vol.10 , pp. 721-740
    • Grotewold, E.1    Chamberlin, M.2    Snook, M.3    Siame, B.4    Butler, L.5
  • 40
    • 0029895565 scopus 로고    scopus 로고
    • Isolation and characterization of rice R genes: Evidence from distinct evolutionary path in rice and maize
    • HU, J., B. ANDERSON and S. R. WESSLER, 1996 Isolation and characterization of rice R genes: evidence from distinct evolutionary path in rice and maize. Genetics 142: 1021-1031.
    • (1996) Genetics , vol.142 , pp. 1021-1031
    • Hu, J.1    Anderson, B.2    Wessler, S.R.3
  • 41
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogeny
    • HUELSENBECK, J. P., and F. RONQUIST, 2001 MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 42
    • 0025352557 scopus 로고
    • Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes
    • HULBERT, S. H., T. E. RICHTER, J. D. AXTELL and J. L. BENNETZEN, 1990 Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes. Proc. Natl. Acad. Sci. USA 87: 4251-4255.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4251-4255
    • Hulbert, S.H.1    Richter, T.E.2    Axtell, J.D.3    Bennetzen, J.L.4
  • 43
    • 0142059819 scopus 로고    scopus 로고
    • A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice
    • ILIC, K., P. J. SANMIGUEL and J. L. BENNETZKN, 2003 A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice. Proc. Natl. Acad. Sci. USA 100: 12265-12270.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 12265-12270
    • Ilic, K.1    Sanmiguel, P.J.2    Bennetzkn, J.L.3
  • 44
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • KIMURA, M., 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
    • (1980) J. Mol. E , vol.16 , pp. 111-120
    • Kimura, M.1
  • 45
    • 0031771373 scopus 로고    scopus 로고
    • Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements
    • LAGERCRANTZ, U., 1998 Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements. Genetics 150: 1217-1228.
    • (1998) Genetics , vol.150 , pp. 1217-1228
    • Lagercrantz, U.1
  • 47
    • 1542338594 scopus 로고    scopus 로고
    • Genomic duplication, fractionalization and the origin of regulatory novelty
    • LANGHAM, R. J., J. WALSH, M. DUNN, C. KO, S. A. GOFF et al., 2004 Genomic duplication, fractionalization and the origin of regulatory novelty. Genetics 166: 935-945.
    • (2004) Genetics , vol.166 , pp. 935-945
    • Langham, R.J.1    Walsh, J.2    Dunn, M.3    Ko, C.4    Goff, S.A.5
  • 48
    • 0032091079 scopus 로고    scopus 로고
    • Activation of the maize anthocyanin gene a2 is mediated by an element conserved in many anthocyanin promoters
    • LESNICK, M. L., and V. L. CHANDLER, 1998 Activation of the maize anthocyanin gene a2 is mediated by an element conserved in many anthocyanin promoters. Plant Physiol. 117: 437-445.
    • (1998) Plant Physiol. , vol.117 , pp. 437-445
    • Lesnick, M.L.1    Chandler, V.L.2
  • 49
    • 0027057528 scopus 로고
    • Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1
    • LLOYD, A. M., V. WALBOT and R. W. DAVIS, 1992 Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1. Science 258: 1773-1775.
    • (1992) Science , vol.258 , pp. 1773-1775
    • Lloyd, A.M.1    Walbot, V.2    Davis, R.W.3
  • 50
    • 0025078528 scopus 로고
    • Maize R gene family: Tissue specific helix-loop-helix proteins
    • LUDWIG, S. R., and S. R. WESSLER, 1990 Maize R gene family: tissue specific helix-loop-helix proteins. Cell 62: 849-851.
    • (1990) Cell , vol.62 , pp. 849-851
    • Ludwig, S.R.1    Wessler, S.R.2
  • 51
    • 0024722623 scopus 로고
    • Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region
    • LUDWIG, S. R., L. F. HABERA, S. L. DELLAPORTA and S. R. WESSLER, 1989 Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. USA 86: 7092-7096.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 7092-7096
    • Ludwig, S.R.1    Habera, L.F.2    Dellaporta, S.L.3    Wessler, S.R.4
  • 52
    • 4344616881 scopus 로고    scopus 로고
    • Rapid recent growth and divergence of rice nuclear genomes
    • MA, J., and J. L. BENNETZEN, 2004 Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. USA 101: 12404-12410.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 12404-12410
    • Ma, J.1    Bennetzen, J.L.2
  • 53
    • 2342466982 scopus 로고    scopus 로고
    • Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
    • MA, J., K. M. DEVOS and J. L. BENNETZEN, 2004 Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res. 14: 860-869.
    • (2004) Genome Res. , vol.14 , pp. 860-869
    • Ma, J.1    Devos, K.M.2    Bennetzen, J.L.3
  • 55
    • 0035826722 scopus 로고    scopus 로고
    • A maize cytokinin gene encoding an O-glucosyltransferase specific to cis-zeatin
    • MARTIN, R. C., M. C. MOK, J. E. HABBEN and D. W. S. MOK, 2001 A maize cytokinin gene encoding an O-glucosyltransferase specific to cis-zeatin. Proc. Natl. Acad. Sci. USA 98: 5922-5926.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5922-5926
    • Martin, R.C.1    Mok, M.C.2    Habben, J.E.3    Mok, D.W.S.4
  • 56
    • 0034755894 scopus 로고    scopus 로고
    • Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome
    • MEYERS, B. C., S. V. TINGEY and M. MORGANTE, 2001 Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Res. 11: 1660-1676.
    • (2001) Genome Res. , vol.11 , pp. 1660-1676
    • Meyers, B.C.1    Tingey, S.V.2    Morgante, M.3
  • 57
    • 0002766586 scopus 로고
    • Cytokinins and plant development: An overview
    • edited by D. W. S. Mok and M. C. Mok. CRC Press, Boca Raton, FL
    • MOK, M. C., 1994 Cytokinins and plant development: an overview, pp. 155-166 in Cytokinins: Chemistry, Activity, and Function, edited by D. W. S. MOK and M. C. MOK. CRC Press, Boca Raton, FL.
    • (1994) Cytokinins: Chemistry, Activity, and Function , pp. 155-166
    • Mok, M.C.1
  • 58
    • 0029334974 scopus 로고
    • Cereal genome evolution: Grasses, line up and form a circle
    • MOORE, G., K. M. DEVOS, Z. WANG and M. D. GALE, 1995 Cereal genome evolution: grasses, line up and form a circle. Curr. Biol. 5: 737-739.
    • (1995) Curr. Biol. , vol.5 , pp. 737-739
    • Moore, G.1    Devos, K.M.2    Wang, Z.3    Gale, M.D.4
  • 59
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome
    • MUSE, S. V., and B. S. GAUT, 1994 A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome. Mol. Biol. Evol. 11: 715-724.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 715-724
    • Muse, S.V.1    Gaut, B.S.2
  • 60
    • 0004248992 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • NEUFFER, M. G., E. H. COE and S. R. WESSLER, 1997 Mutants of Maize. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1997) Mutants of Maize
    • Neuffer, M.G.1    Coe, E.H.2    Wessler, S.R.3
  • 61
    • 10744233719 scopus 로고    scopus 로고
    • Comprehensive analysis of NAC family genes in Oryza saliva and Arabidopsis thaliana
    • OOKA, H., K. SATOH, K. DOI, T. NAGATA, Y. OTOMO et al., 2003 Comprehensive analysis of NAC family genes in Oryza saliva and Arabidopsis thaliana. DNA Res. 10: 239-247.
    • (2003) DNA Res. , vol.10 , pp. 239-247
    • Ooka, H.1    Satoh, K.2    Doi, K.3    Nagata, T.4    Otomo, Y.5
  • 62
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • PATERSON, A. H., J. E. BOWERS and B. A. CHAPMAN, 2004 Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc. Natl. Acad. Sci. USA 29: 9903-9908.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.29 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 63
    • 0026069475 scopus 로고
    • Genetic analysis of B-Peru, a regulatory gene in maize
    • PATTERSON, G. I., L. J. HARRIS, V. WALBOT and V. L. CHANDLER, 1991 Genetic analysis of B-Peru, a regulatory gene in maize. Genetics 126: 205-220.
    • (1991) Genetics , vol.126 , pp. 205-220
    • Patterson, G.I.1    Harris, L.J.2    Walbot, V.3    Chandler, V.L.4
  • 64
    • 0034066527 scopus 로고    scopus 로고
    • The developmental expression of the maize regulatory gene Hopi determines germination-dependent anthocyanin accumulation
    • PETRONI, K., E. COMINELLI, G. CONSONNI, G. GUSMAROLI, G. GAVAZZI et al., 2000 The developmental expression of the maize regulatory gene Hopi determines germination-dependent anthocyanin accumulation. Genetics 155: 323-336.
    • (2000) Genetics , vol.155 , pp. 323-336
    • Petroni, K.1    Cominelli, E.2    Consonni, G.3    Gusmaroli, G.4    Gavazzi, G.5
  • 65
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • POSADA, D., and K. A. CRANDALL, 1998 Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 66
    • 0027999783 scopus 로고
    • Molecular evolution of the plant R regulatory gene family
    • PURUGGANAN, M. D., and S. R. WESSLER, 1994 Molecular evolution of the plant R regulatory gene family. Genetics 138: 849-854.
    • (1994) Genetics , vol.138 , pp. 849-854
    • Purugganan, M.D.1    Wessler, S.R.2
  • 67
    • 0027138596 scopus 로고
    • Regulatory genes controlling anthocyanin pigmentation are functionally conserved among plant species and have distinct sets of target genes
    • QUATTROCCHIO, F., J. F. WING, H. T. C. LEPPEN, J. N. M. MOL and R. E. KOES, 1993 Regulatory genes controlling anthocyanin pigmentation are functionally conserved among plant species and have distinct sets of target genes. Plant Cell 5: 1497-1512.
    • (1993) Plant Cell , vol.5 , pp. 1497-1512
    • Quattrocchio, F.1    Wing, J.F.2    Leppen, H.T.C.3    Mol, J.N.M.4    Koes, R.E.5
  • 68
    • 0026440778 scopus 로고
    • Allelic diversity of the maize B regulatory gene: Different leader and promoter sequences of two Balleles determine distinct tissue specificities of anthocyanin production
    • RADICELLA, J. P., D. BROWN, L. A. TOLAR and V. L. CHANDLER, 1992 Allelic diversity of the maize B regulatory gene: different leader and promoter sequences of two Balleles determine distinct tissue specificities of anthocyanin production. Genes Dev. 6: 2152-2164.
    • (1992) Genes Dev. , vol.6 , pp. 2152-2164
    • Radicella, J.P.1    Brown, D.2    Tolar, L.A.3    Chandler, V.L.4
  • 69
    • 0036861524 scopus 로고    scopus 로고
    • Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes
    • RAMAKRISHNA, W., J. DUBCOVSKY, Y.-J. PARK, C. BUSSO, J. EMBERTON et al., 2002a Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes. Genetics 162: 1389-1400.
    • (2002) Genetics , vol.162 , pp. 1389-1400
    • Ramakrishna, W.1    Dubcovsky, J.2    Park, Y.-J.3    Busso, C.4    Emberton, J.5
  • 70
    • 0036909636 scopus 로고    scopus 로고
    • Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex
    • RAMAKRISHNA, W., J. EMBERTON, P. SANMIGUEL, M. OGDEN, V. LLACA et al., 2002b Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex. Plant Physiol. 130: 1728-1738.
    • (2002) Plant Physiol. , vol.130 , pp. 1728-1738
    • Ramakrishna, W.1    Emberton, J.2    Sanmiguel, P.3    Ogden, M.4    Llaca, V.5
  • 71
    • 0031127329 scopus 로고    scopus 로고
    • Evidence for a direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related MYB domain proteins
    • SAINZ, M. B., E. GROTEWOLD and V. L. CHANDLER, 1997 Evidence for a direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related MYB domain proteins. Plant Cell 9: 611-625.
    • (1997) Plant Cell , vol.9 , pp. 611-625
    • Sainz, M.B.1    Grotewold, E.2    Chandler, V.L.3
  • 72
    • 0034789054 scopus 로고    scopus 로고
    • w allele has a complex organization and includes two genes encoding basic helix-loop-helix proteins involved in anthocyanin biosynthesis
    • w allele has a complex organization and includes two genes encoding basic helix-loop-helix proteins involved in anthocyanin biosynthesis. Plant Cell Physiol. 42: 982-991.
    • (2001) Plant Cell Physiol. , vol.42 , pp. 982-991
    • Sakamoto, W.1    Ohmori, T.2    Kageyama, K.3    Miyazaki, C.4    Saito, A.5
  • 74
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
    • SANDERSON, M. J., 2002b Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 19: 101-109.
    • (2002) Mol. Biol. E , vol.19 , pp. 101-109
    • Sanderson, M.J.1
  • 75
    • 0032413101 scopus 로고    scopus 로고
    • Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
    • SANMIGUEL, P., and J. L. BENNETZEN, 1998 Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann. Bot. 82: 37-44.
    • (1998) Ann. Bot. , vol.82 , pp. 37-44
    • Sanmiguel, P.1    Bennetzen, J.L.2
  • 76
    • 0013630297 scopus 로고    scopus 로고
    • Nested retrotransposons in the intergenic regions of the maize genome
    • SANMIGUEL, P., A. TIKHONOV, Y. JIN, N. MOTCHOULSKAIA, D. ZAKHAROV et al., 1996 Nested retrotransposons in the intergenic regions of the maize genome. Science 274: 765-768.
    • (1996) Science , vol.274 , pp. 765-768
    • Sanmiguel, P.1    Tikhonov, A.2    Jin, Y.3    Motchoulskaia, N.4    Zakharov, D.5
  • 78
    • 0037153190 scopus 로고    scopus 로고
    • The genome sequence and structure of rice chromosome 1
    • SASAKI, T., T. MATSUMOTO, K. YAMAMOTO, K. SAKATA, T. BABA et al., 2002 The genome sequence and structure of rice chromosome 1. Nature 420: 312-316.
    • (2002) Nature , vol.420 , pp. 312-316
    • Sasaki, T.1    Matsumoto, T.2    Yamamoto, K.3    Sakata, K.4    Baba, T.5
  • 79
    • 0042307299 scopus 로고    scopus 로고
    • Gene expression of a gene family in maize based on noncollinear haplotypes
    • SONG, R., and J. MESSING, 2003 Gene expression of a gene family in maize based on noncollinear haplotypes. Proc. Natl. Acad. Sci. USA 100: 9055-9060.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9055-9060
    • Song, R.1    Messing, J.2
  • 80
    • 0035189066 scopus 로고    scopus 로고
    • Sequence, regulation, and evolution of the maize 22-kD zein gene family
    • SONG, R., V. LLACA, E. LINTON and J. MESSING, 2001 Sequence, regulation, and evolution of the maize 22-kD zein gene family. Genome Res. 11: 1817-1825.
    • (2001) Genome Res. , vol.11 , pp. 1817-1825
    • Song, R.1    Llaca, V.2    Linton, E.3    Messing, J.4
  • 81
    • 0036796318 scopus 로고    scopus 로고
    • Mosaic organization of orthologous sequences in grass genomes
    • SONG, R., V. LLACA and J. MESSING, 2002 Mosaic organization of orthologous sequences in grass genomes. Genome Res. 13: 1549-1555.
    • (2002) Genome Res. , vol.13 , pp. 1549-1555
    • Song, R.1    Llaca, V.2    Messing, J.3
  • 82
    • 0002985022 scopus 로고
    • Developmental differences in action of R and B alleles in maize
    • STYLES, E. D., O. CESKA and K. T. SEAH, 1973 Developmental differences in action of R and B alleles in maize. Can. Genet. Cytol. 15: 59-72.
    • (1973) Can. Genet. Cytol. , vol.15 , pp. 59-72
    • Styles, E.D.1    Ceska, O.2    Seah, K.T.3
  • 85
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN and D. G. HIGGINS, 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882.
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 87
    • 0028535148 scopus 로고
    • Elements of the maize A1 promoter required for transactivation by the anthocyanin B/C1 or phlobaphene P regulatory genes
    • TUERCK, J. A., and M. E. FROMM, 1994 Elements of the maize A1 promoter required for transactivation by the anthocyanin B/C1 or phlobaphene P regulatory genes. Plant Cell 6: 1655-1663.
    • (1994) Plant Cell , vol.6 , pp. 1655-1663
    • Tuerck, J.A.1    Fromm, M.E.2
  • 88
    • 0037356424 scopus 로고    scopus 로고
    • O-glucosylation of cis-Zeatin in maize. Characterization of genes, enzymes, and endogenous cytokinins
    • VEACH, Y. K., R. C. MARTIN, S. W. S. MOK, J. MALBECK, R. VANKOVA et al., 2003 O-glucosylation of cis-Zeatin in maize. Characterization of genes, enzymes, and endogenous cytokinins. Plant Physiol. 131: 1374-1380.
    • (2003) Plant Physiol. , vol.131 , pp. 1374-1380
    • Veach, Y.K.1    Martin, R.C.2    Mok, S.W.S.3    Malbeck, J.4    Vankova, R.5
  • 89
    • 0028893838 scopus 로고
    • How often do duplicated genes evolve new functions?
    • WALSH, J. B., 1995 How often do duplicated genes evolve new functions? Genetics 139: 421-428.
    • (1995) Genetics , vol.139 , pp. 421-428
    • Walsh, J.B.1
  • 90
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • WENDEL, J. F., 2000 Genome evolution in polyploids. Plant Mol. Biol. 42: 225-249.
    • (2000) Plant Mol. Biol. , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 91
    • 0028917850 scopus 로고
    • Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium)
    • WENDEL, J. F., A. SCHNABEL and T. SEELANAN, 1995 Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc. Natl. Acad. Sci. USA 92: 280-284.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 280-284
    • Wendel, J.F.1    Schnabel, A.2    Seelanan, T.3
  • 92
    • 0024712231 scopus 로고
    • Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data
    • WOLFE, K. H., M. GOUY, Y.-W. YANG, P. M. SHARP and W.-H. LI, 1989 Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc. Natl. Acad. Sci. USA 86: 6201-6205.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 6201-6205
    • Wolfe, K.H.1    Gouy, M.2    Yang, Y.-W.3    Sharp, P.M.4    Li, W.-H.5
  • 93
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • YANG, Z., 1997 PAML: a program package for phylogenetic analysis by maximum likelihood. Comp. Appl. Biosci. 13: 555-556.
    • (1997) Comp. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 94
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • YANG, Z., andJ. P. BIELAWSKI, 2000 Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15: 496-503.
    • (2000) Trends Ecol. E , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, A.P.2
  • 95
    • 12244260797 scopus 로고    scopus 로고
    • Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization
    • YIM, Y. S., G. L. DAVIS, N. A. DURU, T. A. MUSKET, E. W. LINTON et al., 2002 Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization. Plant Physiol. 130: 1686-1696.
    • (2002) Plant Physiol. , vol.130 , pp. 1686-1696
    • Yim, Y.S.1    Davis, G.L.2    Duru, N.A.3    Musket, T.A.4    Linton, E.W.5
  • 96
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza saliva L. ssp. indica)
    • YU, J., S. N. HU, J. WANG, K. W. GANE, S. G. LI et al., 2002 A draft sequence of the rice genome (Oryza saliva L. ssp. indica). Science 296: 79-92.
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.N.2    Wang, J.3    Gane, K.W.4    Li, S.G.5
  • 97
    • 0027570161 scopus 로고
    • Structure and expression of the S-locus related genes of maize
    • ZHANG, R., and J. C. WALKER, 1993 Structure and expression of the S-locus related genes of maize. Plant Mol. Biol. 21: 1171-1174.
    • (1993) Plant Mol. Biol. , vol.21 , pp. 1171-1174
    • Zhang, R.1    Walker, J.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.