Isolation and characterization of rice R genes: Evidence for distinct evolutionary paths in rice and maize

Genetics

Volumn 142, Issue 3, 1996, Pages 1021-1031

  Hu, Jianping ^a   Anderson, Beth ^a   Wessler, Susan R ^a,b  

^a UNIVERSITY OF GEORGIA   (United States)

^b NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; EVOLUTION; GENE ISOLATION; GENETIC ANALYSIS; GENETIC ORGANIZATION; MAIZE; NONHUMAN; PRIORITY JOURNAL; RICE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMOSOME MAPPING; DNA, PLANT; EVOLUTION; GENE DOSAGE; GENES, PLANT; GENOME, PLANT; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHYLOGENY; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; ZEA MAYS;

EID: 0029895565     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (53)

1. AHN, S., and S. D. TANKSLEY, 1993 Comparative linkage maps of the rice and maize genomes. Proc. Natl. Acad. Sci. USA 90: 7980-7984.
2. ANDERSON, E., 1945 What is Zea mays? A report of progress. Chron. Bot. 9: 88-92.
3. ARUMUGANATHAN, K., and E. D. EARLE, 1991 Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9(3): 208-218.
4. BILANG, R., S. ZHANG, N. LEDUC, V. A. IGLESIAS, A. GISEL et al., 1993 Transient gene expression in vegetative shoot apical meristems of wheat after ballistic microtargeting. Plant J. 4(4): 735-744.
5. BUREAU, T. E., and S. R. WESSLER, 1994 Stowaway: a family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6: 907-916.
6. CASAS, A. M., A. K. KONONOWICZ, U. B. ZEHR, D. T. TOMES, J. D. AXTELL et al., 1993 Transgenic sorghum plants via microprojectile bombardment. Proc. Natl. Acad. Sci. USA 90: 11212-11216.
7. CHANDLER, V. L., J. P. RADICELLA, T. P. ROBBINS, J. CHEN and D. TURKS, 1989 Two regulatory genes of the maize anthocyanin pathway are homologous: isolation of B utilizing R genomic sequences. Plant Cell 1: 1175-1183.
8. COE, E. H., 1993 Gene list and working maps. Maize Genet. Co. Newsl. 67: 133-166.
9. CONE, K. C., S. M. COCCIOLONE, F. A. BURR and B. BURR, 1993 Maize anthocyanin regulatory gene pl is a duplicate of c1 that functions in the plant. Plant Cell 5: 1795-1805.
10. DAMIANI JR., R D., and S. R. WESSLER, 1993 An upstream open reading frame represses expression of Lc, a member of the R/B family of maize transcriptional activators. Proc. Natl. Acad. Sci. USA 90: 8244-8248.
11. DELLAPORTA, S. L., J. WOOD and J. B. HICKS, 1983 A plant DNA minipreparation: version 2.0. Plant Mol. Biol. Rep. 1: 19-22.
12. DELLAPORTA, S. L., I. GREENBLATT, J. L. KERMICLE, J. B. HICKS and S. R. WESSLER, 1988 Molecular cloning of the maize R-nj allele by transposon tagging with Ac, pp. 263-282 in Chromosome Structure and Function: Impact of New Concepts, 18th Stadler Genetics Symposium, edited by J. P. GUSTAFSON and R. APPLES. Plenum, New York.
13. DOONER, H. K., and J. L. KERMICLE, 1971 Structure of the Rr tandem duplication in maize. Genetics 67: 427-436.
14. DOONER, H. K., and J. L. KERMICLE, 1976 Displaced and tandem duplication in the long arm of chromosome 10 in maize. Genetics 82: 309-322.
15. FLAVELL, R. B., 1984 DNA transposition-a major contributor to plant chromosome structure BioEssays 1: 21-22.
16. GALLIE, D. R., 1993 Posttranscriptional regulation of gene expression in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 44: 77-105.
17. GALWAY, M. E., J. D. MASUCCI, A. M. LLOYD, V. WALBOT, R. W. DAVIS et al., 1994 The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root. Dev. Biol. 166: 740-754.
18. GOFF, S. A., T. M. KLEIN, B. A. ROTH, M. E. FROMM, K. C. CONE et al., 1990 Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues. EMBO J. 9: 2517-2522.
19. GOFF, S. A., K. C. CONE and V. L. CHANDLER, 1992 Functional analysis of the transcriptional activator encoded by the maize B gene: evidence for a direct functional interaction between two classes of regulatory proteins. Genes Dev. 6: 864-875.
20. GOODRICH, J., R. CARPENTER and E. S. COEN, 1992 A common gene regulates pigmentation pattern in diverse plant species. Cell 68: 955-964.
21. HELENTJARIS, T., D. WEBER and S. WRIGHT, 1988 Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms. Genetics 118: 353-363.
22. KINOSHITA, T., 1984 Gene analysis and linkage map, pp. 187-274 in Biology of Rice, edited by S. TSUNODA and N. TAKAHASHI. Jpn. Sci. Soc. Press, Elsevier, Tokyo.
23. KINOSHITA, T., 1993 Report of the committee on gene symbolization. Rice Genet. Newsl. 10: 18-32.
24. KLEIN, T. M., B. A. ROTH and M. E. FROMM, 1989 Regulation of anthocyanin biosynthetic genes introduced into intact maize tissues by microprojectiles. Proc. Natl. Acad. Sci. USA 86: 6681-6685.
25. KOZAK, M., 1989 The scanning model for translation: an update. J. Cell Biol. 108: 229-241.
26. LLOYD, A. M., V. WALBOT and R. W. DAVIS, 1992 Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1. Science 258: 1773-1775.
27. LUDWIG, S. R., and S. R. WESSLER, 1990 Maize R gene family: tissue specific helix-loop-helix proteins. Cell 62: 849-851.
28. LUDWIG, S. R., L. F. HABERA, S. L. DELLAPORTA and S. R. WESSLER, 1989 Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. USA 86: 7092-7096.
29. LUDWIG, S. R., B. BOWEN, L. BEACH and S. R. WESSLER, 1990 A regulatory gene as a novel visible marker for maize transformation. Science 247: 449-450.
30. NAGAO, S., 1951 Genetic analysis and linkage relationship of characters in rice. Adv. Genet. 4: 181-212.
31. NAGAO, S., and M. TAKAHASHI, 1956 The third gene in apiculus coloration. Genetic studies on rice plant, XIX. Jpn. J. Bot. 15: 141-151.
32. OKA, H. I., 1988 Origin of Cultivated Rice. Jpn Sci. Soc. Press, Elsevier, Amsterdam.
33. OKAGAKI, R. J., and S. R. WESSLER, 1988 Comparison of non-mutant and mutant waxy genes in rice and maize. Genetics 120: 1137-1143.
34. PAZ-ARES, J., D. GHOSAL, U. WIENAND, P. A. PETERSON and H. SAEDLER, 1987 The regulatory C1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J. 6: 3553-3558.
35. PURUGGANAN, M. D., and S. R. WESSLER, 1994 Molecular evolution of the plant R regulatory gene family. Genetics 138: 849-854.
36. QUATTROCCHIO, F. M., 1994 Regulatory genes controlling flower pigmentation in Petunia hybrida. Ph.D. thesis, Vrije University, Amsterdam.
37. QUATTROCCHIO, F., J. F. WING, H. T. C. LEPPEN, J. N. M. MOL and R. E. KOES, 1993 Regulatory genes controlling anthocyanin pigmentation are functionally conserved among plant species and have distinct sets of target genes. Plant Cell 5: 1497-1512.
38. RADICELLA, J. P., D. BROWN, L. A. TOLAR and V. L. CHANDLER, 1992 Allelic diversity of the maize B regulatory gene: different leader and promoter sequences of two B alleles determine distinct tissue specificities of anthocyanin production. Genes Dev. 6: 2152-2164.
39. ROBBINS, T. P., J. CHEN, M. A. NORELL and S. L. DELLAPORTA, 1989 Molecular and genetic analysis of the R and B loci in maize, pp. 105-114 in The Genetics of Flavanoids - Proceedings of a Post Congress Meeting of the XVI International Congress of Genetics, edited by D. E. STYLES, G. A. GAVAZZI and M. L. RACCHI. Edizioni Unicopli, Milan.
40. ROBBINS, T. P., E. L. WALKER, J. L. KERMICLE, M. ALLEMAN and S. L. DELLAPORTA, 1991 Meiotic instability of the R-r complex arising from displaced intragenic exchange and intrachromosomal rearrangement. Genetics 129: 271-283.
41. ROTH, B. A., S. A. GOFF, T. M. KLEIN and M. E. FROMM, 1991 C1-and R-dependent expression of the maize Bz1 gene requires sequences with homology to mammalian myb and myc binding sites. Plant Cell 3: 317-325.
42. SAMBROOK, J., E. F. FRITSCH and T. MANIATIS, 1989 Molecular Cloning: A Laboratory Mannual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
43. SANGER, E., S. NICKLEN and A. R. COULSON, 1977 DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad Sci. USA 74(12): 5463-5467.
44. SHIEH, M. W., S. R. WESSLER and N. V. RAIKHEL, 1993 Nuclear targeting of the maize R protein requires two nuclear localization sequences. Plant Physiol. 101: 353-361.
45. STADLER, L. J., and S. FOGEL, 1943 Gene variability in maize I. Some alleles of R (R-r series). Genetics 28: 90-91.
46. STADLER, L. J., and S. FOGEL, 1945 Gene variability in maize II. The action of certain R alleles. Genetics 30: 23-24.
47. STADLER, L. J., and M. G. NUFFER, 1953 Problems of gene structure. II. Separation of Rr elements (S) and (P) by unequal crossing over. Science 117: 471-472.
48. STYLES, E. D., O. CESKA and K. T. SEAH, 1973 Developmental differences in action of R and B alleles in maize. Can. J. Genet. Cytol. 15: 59-72
49. TAKAHASHI, M., 1957 Analysis of apiculus color genes essential to anthocyanin coloration in rice. J. Fac. Agr. Hokkaido Univ. 50(3): 266-362.
50. TENZEN, T., Y. MATSUDA, H. OHTSUBO and E. OHTSUBO, 1994 Transposition of Tnr1 in rice genomes to 5′-PuTAPy-3′ sites, duplicating the TA sequence. Mol. Gen. Genet. 245: 441-448.
51. VAUGHAN, D. A., 1989 The genus Oryza L.: current status of taxonomy. Int. Rice Res. Inst. Res. Pap. Ser. No. 138: 2-21.
52. WALKER, E L., T. P. ROBBINS, T. E. BUREAU, J. KERMICLE and S. L. DELLAPORTA, 1995 Transposon-mediated chromosomal rearrangements and gene duplications in the formation of the maize R-r complex. EMBO J. 14(10): 2350-2363.
53. WHITKUS, R., J. DOEBLEY and M. LEE, 1992 Comparative genome mapping of sorghum and maize. Genetics 132: 1119-1130.