Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements

Genetics

Volumn 150, Issue 3, 1998, Pages 1217-1228

  Lagercrantz, Ulf ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

ARABIDOPSIS; ARTICLE; CHROMOSOME REARRANGEMENT; CHROMOSOME STRUCTURE; EVOLUTION; GENE LOCUS; GENE MAPPING; GENE REPLICATION; GENETIC LINKAGE; GENOME; PRIORITY JOURNAL;

ARABIDOPSIS; BRASSICA; CHROMOSOME MAPPING; DNA REPLICATION; DNA, PLANT; GENE REARRANGEMENT; GENOME, PLANT; SPECIES SPECIFICITY;

EID: 0031771373     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (81)

1. AHN, S., and S. TANKSLEY, 1993 Comparative linkage maps of the rice and maize genomes. Proc. Natl. Acad. Sci. USA 90: 7980-7984.
2. AHN, S., J. ANDERSON, M. SORRELLS and S. TANKSLEY, 1993 Homeologous relationships of rice, wheat and maize chromosomes. Mol. Gen. Genet. 241: 483-490.
3. ARUMUGANATHAN, K., and E. D. EARLE, 1991 Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218.
4. AXELSSON, T., C. BOWMAN, D. LYDIATE and U. LAGERCRANTZ, 1998 RFLP mapping indicates conserved A and B genome linkage groups in Brassica juncea. Proceedings, Plant Genome VI, p. 133.
5. BARENDSE, W., S. ARMITAGE, L. KOSSAREK, A. SHALOM, B. KIRKPATRICK et al., 1994 A genetic linkage map of the bovine genome. Nat. Genet. 6: 227-235.
6. BARIOLA, P., C. HOWARD, C. TAYLOR, M. VERBURG, V. JAGLAN et al., 1994 The Arabidopsis ribonuclease gene RNS1 is tightly controlled in response to phosphate limitation. Plant J. 6: 673-685.
7. BARNETT, M., V. BUCKLE, E. EVANS, A. PORTER, D. ROUT et al., 1993 Telomere directed fragmentation of mammalian chromosomes. Nucleic Acids Res. 21: 27-36.
8. n sequences in gene amplification and chromosome stability, Genomics 24: 53-62.
9. BEVAN, M., I. BANCROFT, E. BENT, K. LOVE, H. GOODMAN et al., 1998 Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana. Nature 391: 485-488.
10. BUSH, G., S. CASE, A. WILSON and J. PATTON, 1977 Rapid speciation and chromosomal evolution in mammals. Proc. Natl. Acad. Sci. USA 74: 3942-3946.
11. CAVELL, A., D. LYDIATE, I. PARKIN, C. DEAN and M. TRICK, 1998 A 30 centimorgan segment of Arabidopsis thaliana chromosome 4 has six collinear homologues within the Brassica napus genome. Genome 41: 62-69.
12. CHANG, G., J. L. BOWMAN, A. W. DE JOHN, E. S. LANDER and E. M. MEYEROWITZ, 1988 Restriction fragment length polymorphism linkage map for Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 85: 6856-6860.
13. CHEN, Q., and K. ARMSTRONG, 1994 Genomic in situ hybridization in Avena sativa. Genome 37: 607-612.
14. COPELAND, N., N. JENKINS, D. GILBERT, J. EPPIG, L. MALTAIS et al., 1993 A linkage map of the mouse: current applications and future prospects. Science 262: 57-66.
15. ECKER, J., 1998 Genes blossom from a weed. Nature 391: 438-439.
16. EHRLICH, J., D. SANKOFF and J. NADEAU, 1997 Synteny conservation and chromosome rearrangements during mammalian evolution. Genetics 147: 289-296.
17. ELDRIDGE, M., and R. CLOSE, 1993 Radiation of chromosome shuffles. Curr. Opin. Genet. Dev. 3: 915-922.
18. FABRI, C., and A. SCHAEFFNER, 1994 An Arabidopsis thaliana RFLP mapping set to localize mutations to chromosomal regions. Plant J. 5: 149-156.
19. FEINBAUM, R., and F. AUSUBEL, 1988 Transcription regulation of the Arabidopsis thaliana chalcone synthase gene. Mol. Cell. Biol. 8: 1985-1992.
20. GAUT, B., and J. DOEBLEY, 1997 DNA sequence evidence for the segmental allotetraploid origin of maize, Proc. Natl. Acad. Sci. USA 94: 6809-6814.
21. GRAVES, J., 1996 Mammalians that break the rules: genetics of marsupials and monotremes. Annu. Rev. Genet. 30: 233-260.
22. HASTIE, N., and R. ALLSHIRE, 1989 Human telomeres: fusion and interstitial sites. Trends Genet. 5: 326-331.
23. HAUGE, B., S. HANLEY, S. CARTINHOUR, J. CHERRY and H. GOODMAN, 1993 An integrated genetic/RFLP map of the Arabidopsis thaliana genome. Plant J. 3: 745-754.
24. HELENTJARIS, T., D. WEBER and S. WRIGHT, 1988 Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphims. Genetics 118: 353-363.
25. JANKE, A., G. FELDMAIER-FUCHS, W. KELLEY TOMAS, A. VON HAESELER and S. PÄÄBO, 1994 The marsupial mitochondrial genome and the evolution of the placental mammals. Genetics 137: 243-256.
26. JELLEN, E., B. GILL and T. COX, 1994 Genomic in site hybridization differentiates between A/D- and C-genome chromatin and detects intergenomic translocations in polyploid oat species (genus Avena). Genome 37: 613-618.
27. JOHANSSON, M., H. ELLEGREN and L. ANDERSSON, 1995 Comparative mapping reveals extensive linkage conservation - but with gene order rearrangements - between the pig and the human genomes. Genomics 25: 682-690.
28. KENTON, A., A. S. PAROKONNY, Y. Y. GLEBA and M. D. BENNETT, 1993 Characterization of the Nicotiana tabacum L. genome by molecular cytogenetics. Mol. Gen. Genet. 240: 159-169.
29. KONIECZNY, A., and F. AUSUBEL, 1993 A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 4: 403-410.
30. KOWALSKI, S., T. LAN, K. FELDMANN and A. PATERSON, 1994 Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization. Genetics 138: 499-510.
31. LAGERCRANTZ, U., and D. LYDIATE, 1995 RFLP mapping in Brassica nigra indicates differing recombination rates in male and female meiosis. Genome 38: 255-264.
32. LAGERCRANTZ, U., and D. LYDIATE, 1996 Comparative genome mapping in Brassica. Genetics 144: 1903-1910.
33. LAGERCRANTZ, U., J. PUTTERILL, G. COUPLAND and D. LYDIATE, 1996 Comparative mapping in Arabidopsis and Brassica, fine scale genome collinearity and congruence of genes controlling flowering time. Plant J. 9: 13-20.
34. LANDE, R., 1979 Effective deme size during long-term evolution estimated from rates of chromosomal rearrangements. Evolution 33: 234-251.
35. LANDER, E., P. GREEN, J. ABRAHAMSON, A. BARLOW, M. DALY et al., 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
36. LEITCH, I., and M. BENNETT, 1997 Polyploidy in angiosperms. Trends Plant Sci. 2: 470-476.
37. LINCOLN, S., M. DALY and E. LANDER, 1992 Mapping Genes Controlling Quantitative Traits with MAPMAKER/QTL 1.1, Ed. 2. Whitehead Institute Technical Report, Cambridge, MA.
38. LISTER, C., and C. DEAN, 1993 Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J. 4: 745-750.
39. LIU, Y., N. MITSUKAWA, C. LISTER, C. DEAN and R. WHITTIER, 1996 Isolation and mapping of a new set of 129 RFLP markers in Arabidopsis thaliana using recombinant inbred lines. Plant J. 10: 733-736.
40. LYDIATE, D., A. SHARPE, U. LAGERCRANTZ and I. PARKIN, 1993 Mapping the Brassica genome. Outlook Agric. 22: 85-92.
41. MA, H., M. YANOFSKY and E. MEYEROWITZ, 1990 Molecular cloning and characterization of GPA1, a G protein alpha subunit gene from Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 87: 3821-3825.
42. MASTERSON, J., 1994 Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms. Science 264: 421-424.
43. MATSUI, M., S. SASAMOTO, T. KUNIEDA, N. NOMURA and R. ISHIZAKI, 1989 Cloning of Ara, a putative Arabidopsis thaliana gene homologous to the Ras-related gene family. Gene 76: 313-320.
44. MCGRATH, J. M., M. M. JANSCO and E. PICHERSKY, 1993 Duplicate sequences with a similarity to expressed genes in the genome of Arabidopsis thaliana. Theor. Appl. Genet. 86: 880-888.
45. MEYEROWITZ, E., 1992 Introduction to the Arabidopsis genome, pp. 102-118 in Methods in Arabidopsis Research, edited by C. KONCZ, N. CHUA and J. SCHELL. World Scientific, Singapore.
46. n telomeric sequence in vertebrate chromosomes. Chromosoma 99: 3-10.
47. MINDRINOS, M., F. KATAGIRI, G. YU and F. AUSUBEL, 1994 The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats. Cell 78: 1089-1099.
48. MITHEN, R., A. F. RAYBOLD and A. GIAMOUSTARIS, 1995 Divergent selection for secondary metabolites between wild populations of Brassica oleracea and its implications for plant-herbivore interactions. Heredity 75: 472-484.
49. MOORE, G., K. DEVOS, Z. WANG and M. GALE, 1995 Grasses line up and form a circle. Curr. Biol. 5: 737-739.
50. MORIZOT, D., 1994 Reconstructing the gene map of the vertebrate ancestor. Anim. Biotech. 5: 113-122.
51. MULLER, J., 1981 Fossil pollen records of extant angiosperms. Bot. Rev. 47: 1-142.
52. NADEAU, J., and B. TAYLOR, 1984 Lengths of chromosomal segments conserved since divergence of man and mouse. Proc. Natl. Acad. Sci. USA 81: 814-818.
53. O'BRIEN, S., H. SEUÁNEZ and J. WOMACK, 1988 Mammalian genome organization: an evolutionary view. Annu. Rev. Genet. 22: 323-351.
54. OSBORN, T. C., G. KOLE, I. A. P. PARKIN, A. G. SHARPE, M. KUIPER et al., 1997 Comparison of flowering time genes in Brassica rapa, B. napus and Arabidopsis thaliana. Genetics 146: 1123-1129.
55. PARKIN, I., A. SHARPE, D. KEITH and D. LYDIATE, 1995 Identification of the A and C genomes of amphidiploid Brassica napus (oilseed rape). Genome 38: 1122-1131.
56. PATERSON, A., T. LAN, K. REISCHMANN, C. CHANG, Y. LIN et al., 1996 Toward a unified genetic map of higher plants, transcending the monocot-dicot divergence. Nat. Genet. 14: 380-382.
57. PRICE, R., J. PALMER and I. AL-SHEHBAZ, 1994 Systematic relationships of Arabidopsis: a molecular and morphological perspective, pp. 7-19 in Arabidopsis, edited by E. MEYEROWITZ and C. SOMERVILLE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
58. PRINCE, J., E. POCHARD and S. TANKSLEY, 1993 Construction of a molecular linkage map of pepper and a comparison of synteny with tomato. Genome 36: 404-417.
59. REINISCH, A., J. DONG, C. BRUBAKER, D. STELLY, J. WENDEL et al., 1994 A detailed RFLP map of cotton, Gossypium hirsutum X Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics 138: 829-847.
60. RICHARDS, E., and F. AUSUBEL, 1988 Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell 53: 127-136.
61. ROUND, E., S. FLOWERS and E. RICHARDS, 1997 Arabidopsis thaliana centromere regions: genetic map positions and repetitive DNA structure. Genome Res. 7: 1045-1053.
62. SCHEFFLER, J., A. SHARPE, H. SCHMIDT, P. SPERLING, I. PARKIN et al., 1996 Desaturase multigene families of Brassica napus arose through genome duplication. Theor. Appl. Genet. 94: 583-591.
63. SHARROCK, R., and P. QUAIL, 1989 Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. Genes Dev. 3: 1745-1757.
64. SHIH, M., P. HEINRICH and H. GOODMAN, 1991 Cloning and chromosomal mapping of nuclear genes encoding chloroplast and cytosolic glyceraldehyde-3-phosphate dehydrogenase from Arabidopsis thaliana. Gene 104: 133-138.
65. SHOEMAKER, R., T. OLSON and V. KANAZIN, 1996 Soybean genome organization: evolution of a legume genome, pp. 139-150 in Genomes of Plants and Animals: 21st Stadler Genetics Symposium, edited by J. P. GUSTAFSON and R. FLAVELL. Plenum Press, New York.
66. SLIJEPCEVIC, P., Y. XIAO, I. DOMINGUEZ and A. NATARAJAN, 1996 Spontaneous and radiation-induced chromosomal breakage at interstitial telomeric sites. Chromosoma 104: 596-604.
67. SLOCUM, M. K., S. S. FIGDORE, W. C. KENNARD, J. Y. SUZUKI and T. C. OSBORN, 1990 Linkage arrangements of restriction fragment length polymorphism loci in Brassica oleracca. Theor. Appl. Genet. 80: 57-64.
68. SNOGERUP, S., M. GUSTAFSSON and R. VON BOTHMER, 1990 Brassica sect. Brassica (Brassicaceae). I. Taxonomy and variation. Willenowia 19: 271-365.
69. SÖDERMAN, E. 1996 Genes encoding homeodomain-leucine zipper proteins in Arabidopsis thaliana. Ph.D. thesis, Uppsala University, Uppsala Sweden.
70. SONG, K, P. LU, K. TANG and T. OSBORN, 1995 Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc. Natl. Acad. Sci. USA 92: 7719-7723.
71. STAM, P., 1993 Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. Plant J. 3: 739-744.
72. SUN, T., and Y. KAMIYA, 1994 The Arabidopsis GA1 locus encodes the cyclase ent-kaurene synthetase A of gibberellin biosynthesis. Plant Cell 6: 1509-1518.
73. TANKSLEY, S., M. GANAL, J. PRINCE, M. DE VICENTE, M. BONIERBALE et al., 1992 High density molecular maps of the tomato and potato genomes. Genetics 132: 1141-1160.
74. TANKSLEY, S., R. BERNATZKY, N. LAPITAN and J. PRINCE, 1988 Conservation of gene repertoire but not gene order in pepper and tomato. Proc. Natl. Acad. Sci. USA 85: 6419-6423.
75. U, N., 1935 Genomic analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Jpn. J. Bot. 7: 389-452.
76. WENDEL, J., 1989 New world cottons contain old world cytoplasm. Proc. Natl. Acad. Sci. USA 86: 4132-4136.
77. WHITE, M., 1973 Animal Cytology and Evolution. William Clowes and Sons, London.
78. WHITKUS, R., J. DOEBLEY and M. LEE, 1992 Comparative genome mapping of sorghum and maize. Genetics 132: 1119-1130.
79. WILSON, A., V. SARICH and L. MAXON, 1974 The importance of gene rearrangements in evolution: evidence from studies of rates of chromosomal, protein, and anatomical evolution. Proc. Natl. Acad. Sci. USA 71: 3028-3030.
80. WILSON, A., T. WHITE, S. CARLSON and L. CHERRY, 1977 Molecular evolution and cytogenetic evolution, pp. 375-393 in Molecular Human Cytogenetics, ICN-UCLA Symposia on Molecular and Cellular Biology, Vol. VII, edited by E. A. SPARKES. Academic Press, San Francisco.
81. YANOFSKY, M., H. MA, J. BOWMAN, G. DREWS, K. FELDMANN et al., 1990 The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors. Nature 346: 35-39.