메뉴 건너뛰기




Volumn 14, Issue 2, 2005, Pages 221-233

Strand bias in oligonucleotide-mediated dystrophin gene editing

Author keywords

[No Author keywords available]

Indexed keywords

DYSTROPHIN; GENOMIC DNA; MESSENGER RNA; OLIGODEOXYNUCLEOTIDE DERIVATIVE; OLIGONUCLEOTIDE;

EID: 12744274779     PISSN: 09646906     EISSN: None     Source Type: Journal    
DOI: 10.1093/hmg/ddi020     Document Type: Article
Times cited : (56)

References (39)
  • 1
    • 0023614271 scopus 로고
    • Complete cloning of the Duchenne muscular dystrophy (DMD) cDNA and preliminary genomic organization of the DMD gene in normal and affected individuals
    • Koenig, M., Hoffman, E.P., Bertelson, C.J., Monaco, A.P., Feener, C. and Kunkel, L.M. (1987) Complete cloning of the Duchenne muscular dystrophy (DMD) cDNA and preliminary genomic organization of the DMD gene in normal and affected individuals. Cell, 50, 509-517.
    • (1987) Cell , vol.50 , pp. 509-517
    • Koenig, M.1    Hoffman, E.P.2    Bertelson, C.J.3    Monaco, A.P.4    Feener, C.5    Kunkel, L.M.6
  • 2
    • 0002138867 scopus 로고    scopus 로고
    • Structure and mutation of the dystrophin gene
    • Brown, S.C. and Lucy, J.A. (eds.), Cambridge University Press, Cambridge
    • Amalfitano, A., Rafael, J.A. and Chamberlain, J.S. (1996) Structure and mutation of the dystrophin gene. In Brown, S.C. and Lucy, J.A. (eds.), Dystrophin. Cambridge University Press, Cambridge, pp. 1-26.
    • (1996) Dystrophin , pp. 1-26
    • Amalfitano, A.1    Rafael, J.A.2    Chamberlain, J.S.3
  • 3
    • 0042170127 scopus 로고    scopus 로고
    • Gene therapy for muscular dystrophy - A review of promising progress
    • Gregorevic, P. and Chamberlain, J.S. (2003) Gene therapy for muscular dystrophy - a review of promising progress. Expert. Opin. Biol. Ther., 3, 803-814.
    • (2003) Expert. Opin. Biol. Ther. , vol.3 , pp. 803-814
    • Gregorevic, P.1    Chamberlain, J.S.2
  • 4
    • 0036824027 scopus 로고    scopus 로고
    • Oligonucleotide-mediated gene therapy for muscular dystrophies
    • Rando, T.A. (2002) Oligonucleotide-mediated gene therapy for muscular dystrophies. Neuromuscul. Disord., 12, S55-S60.
    • (2002) Neuromuscul. Disord. , vol.12
    • Rando, T.A.1
  • 7
    • 0034624974 scopus 로고    scopus 로고
    • Rescue of dystrophin expression in mdx mouse muscle by RNA/DNA oligonucleotides
    • Rando, T.A., Disatnik, M.H. and Zhou, L.Z. (2000) Rescue of dystrophin expression in mdx mouse muscle by RNA/DNA oligonucleotides. Proc. Natl Acad. Sci. U.S.A, 97, 5363-5368.
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 5363-5368
    • Rando, T.A.1    Disatnik, M.H.2    Zhou, L.Z.3
  • 8
    • 0036211418 scopus 로고    scopus 로고
    • Dystrophin gene repair in mdx muscle precursor cells in vitro and in vivo mediated by RNA-DNA chimeric oligonucleotides
    • Bertoni, C. and Rando, T.A. (2002) Dystrophin gene repair in mdx muscle precursor cells in vitro and in vivo mediated by RNA-DNA chimeric oligonucleotides. Hum. Gene Ther., 13, 707-718.
    • (2002) Hum. Gene Ther. , vol.13 , pp. 707-718
    • Bertoni, C.1    Rando, T.A.2
  • 9
    • 0038440559 scopus 로고    scopus 로고
    • Restoration of dystrophin expression in mdx muscle cells by chimeraplast-mediated exon skipping
    • Bertoni, C., Lau, C. and Rando, T.A. (2003) Restoration of dystrophin expression in mdx muscle cells by chimeraplast-mediated exon skipping. Hum. Mol. Genet., 12, 1087-1099.
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 1087-1099
    • Bertoni, C.1    Lau, C.2    Rando, T.A.3
  • 10
    • 0029892249 scopus 로고    scopus 로고
    • Targeted gene correction of episomal DNA in mammalian cells mediated by a chimeric RNA/DNA oligonucleotide
    • Yoon, K., Cole-Strauss, A. and Kmiec, E.B. (1996) Targeted gene correction of episomal DNA in mammalian cells mediated by a chimeric RNA/DNA oligonucleotide. Proc. Natl. Acad. Sci. U.S.A, 93, 2071-2076.
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 2071-2076
    • Yoon, K.1    Cole-Strauss, A.2    Kmiec, E.B.3
  • 11
  • 12
    • 0031953132 scopus 로고    scopus 로고
    • In vivo site-directed mutagenesis of the factor IX gene by chimeric RNA/DNA oligonucleotides
    • Kren, B.T., Bandyopadhyay, P. and Steer, C.J. (1998) In vivo site-directed mutagenesis of the factor IX gene by chimeric RNA/DNA oligonucleotides. Nat. Med., 4, 285-290.
    • (1998) Nat. Med. , vol.4 , pp. 285-290
    • Kren, B.T.1    Bandyopadhyay, P.2    Steer, C.J.3
  • 13
    • 0035918314 scopus 로고    scopus 로고
    • Gene correction of the apolipoprotein (Apo) E2 phenotype to wild-type ApoE3 by in situ chimeraplasty
    • Tagalakis, A.D., Graham, I.R., Riddell, D.R., Dickson, J.G. and Owen, J.S. (2001) Gene correction of the apolipoprotein (Apo) E2 phenotype to wild-type ApoE3 by in situ chimeraplasty. J. Biol. Chem., 276, 13226-13230.
    • (2001) J. Biol. Chem. , vol.276 , pp. 13226-13230
    • Tagalakis, A.D.1    Graham, I.R.2    Riddell, D.R.3    Dickson, J.G.4    Owen, J.S.5
  • 14
    • 0033989521 scopus 로고    scopus 로고
    • Localized in vivo genotypic and phenotypic correction of the albino mutation in skin by RNA-DNA oligonucleotide
    • Alexeev, V., Igoucheva, O., Domashenko, A., Cotsarelis, G. and Yoon, K. (2000) Localized in vivo genotypic and phenotypic correction of the albino mutation in skin by RNA-DNA oligonucleotide. Nat. Biotechnol., 18, 43-47.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 43-47
    • Alexeev, V.1    Igoucheva, O.2    Domashenko, A.3    Cotsarelis, G.4    Yoon, K.5
  • 15
    • 0035069295 scopus 로고    scopus 로고
    • The potential of nucleic acid repair in functional genomics
    • Rice, M.C., Czymmek, K. and Kmiec, E.B. (2001) The potential of nucleic acid repair in functional genomics. Nat. Biotechnol., 19, 321-326.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 321-326
    • Rice, M.C.1    Czymmek, K.2    Kmiec, E.B.3
  • 16
    • 0034327613 scopus 로고    scopus 로고
    • The DNA strand of chimeric RNA/DNA oligonucleotides can direct gene repair/conversion activity in mammalian and plant cell-free extracts
    • Gamper, H.B., Parekh, H., Rice, M.C., Bruner, M., Youkey, H. and Kmiec, E.B. (2000) The DNA strand of chimeric RNA/DNA oligonucleotides can direct gene repair/conversion activity in mammalian and plant cell-free extracts. Nucleic Acids Res., 28, 4332-4339.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4332-4339
    • Gamper, H.B.1    Parekh, H.2    Rice, M.C.3    Bruner, M.4    Youkey, H.5    Kmiec, E.B.6
  • 17
    • 0035077792 scopus 로고    scopus 로고
    • Targeted gene correction by small single-stranded oligonucleotides in mammalian cells
    • Igoucheva, O., Alexeev, V. and Yoon, K. (2001) Targeted gene correction by small single-stranded oligonucleotides in mammalian cells. Gene Ther., 8, 391-399.
    • (2001) Gene Ther. , vol.8 , pp. 391-399
    • Igoucheva, O.1    Alexeev, V.2    Yoon, K.3
  • 18
    • 0035886376 scopus 로고    scopus 로고
    • In vivo gene repair of point and frameshift mutations directed by chimeric RNA/DNA oligonucleotides and modified single-stranded oligonucleotides
    • Liu, L., Rice, M.C. and Kmiec, E.B. (2001) In vivo gene repair of point and frameshift mutations directed by chimeric RNA/DNA oligonucleotides and modified single-stranded oligonucleotides. Nucleic Acids Res., 29, 4238-4250.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 4238-4250
    • Liu, L.1    Rice, M.C.2    Kmiec, E.B.3
  • 19
    • 0036953421 scopus 로고    scopus 로고
    • Simultaneous targeted alteration of the tyrosinase and c-kit genes by single-stranded oligonucleotides
    • Alexeev, V., Igoucheva, O. and Yoon, K. (2002) Simultaneous targeted alteration of the tyrosinase and c-kit genes by single-stranded oligonucleotides. Gene Ther., 9, 1667-1675.
    • (2002) Gene Ther. , vol.9 , pp. 1667-1675
    • Alexeev, V.1    Igoucheva, O.2    Yoon, K.3
  • 20
    • 0037705453 scopus 로고    scopus 로고
    • Transcription affects formation and processing of intermediates in oligonucleotide-mediated gene alteration
    • Igoucheva, O., Alexeev, V., Pryce, M. and Yoon, K. (2003) Transcription affects formation and processing of intermediates in oligonucleotide-mediated gene alteration. Nucleic Acids Res., 31 2659-2670.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2659-2670
    • Igoucheva, O.1    Alexeev, V.2    Pryce, M.3    Yoon, K.4
  • 21
    • 0037265663 scopus 로고    scopus 로고
    • Oligonucleotide-directed single-base DNA alterations in mouse embryonic stem cells
    • Pierce, E.A., Liu, Q., Igoucheva, O., Omarrudin, R., Ma, H., Diamond, S.L. and Yoon, K. (2003) Oligonucleotide-directed single-base DNA alterations in mouse embryonic stem cells. Gene Ther., 10 24-33.
    • (2003) Gene Ther. , vol.10 , pp. 24-33
    • Pierce, E.A.1    Liu, Q.2    Igoucheva, O.3    Omarrudin, R.4    Ma, H.5    Diamond, S.L.6    Yoon, K.7
  • 22
    • 3242730327 scopus 로고    scopus 로고
    • Oligonucleotide-directed mutagenesis and targeted gene correction: A mechanistic point of view
    • Igoucheva, O., Alexeev, V. and Yoon, K. (2004) Oligonucleotide-directed mutagenesis and targeted gene correction: a mechanistic point of view. Curr. Mol. Med., 4, 445-463.
    • (2004) Curr. Mol. Med. , vol.4 , pp. 445-463
    • Igoucheva, O.1    Alexeev, V.2    Yoon, K.3
  • 23
    • 0141927821 scopus 로고    scopus 로고
    • Correction/mutation of acid alpha-D-glucosidase gene by modified single-stranded oligonucleotides: In vitro and in vivo studies
    • Lu, I.L., Lin, C.Y., Lin, S.B., Chen, S.T., Yeh, L.Y., Yang, F.Y. and Au, L.C. (2003) Correction/mutation of acid alpha-D-glucosidase gene by modified single-stranded oligonucleotides: in vitro and in vivo studies. Gene Ther., 10, 1910-1916.
    • (2003) Gene Ther. , vol.10 , pp. 1910-1916
    • Lu, I.L.1    Lin, C.Y.2    Lin, S.B.3    Chen, S.T.4    Yeh, L.Y.5    Yang, F.Y.6    Au, L.C.7
  • 24
    • 0042878534 scopus 로고    scopus 로고
    • A comparison of gene repair strategies in cell culture using a lacZ reporter system
    • Nickerson, H.D. and Colledge, W.H. (2003) A comparison of gene repair strategies in cell culture using a lacZ reporter system. Gene Ther., 10, 1584-1591.
    • (2003) Gene Ther. , vol.10 , pp. 1584-1591
    • Nickerson, H.D.1    Colledge, W.H.2
  • 25
    • 0344494921 scopus 로고    scopus 로고
    • Development of a dual-luciferase fusion gene as a sensitive marker for site-directed DNA repair strategies
    • Bennett, M. and Schaack, J. (2003) Development of a dual-luciferase fusion gene as a sensitive marker for site-directed DNA repair strategies. J. Gene Med., 5, 723-732.
    • (2003) J. Gene Med. , vol.5 , pp. 723-732
    • Bennett, M.1    Schaack, J.2
  • 26
    • 0037445212 scopus 로고    scopus 로고
    • Targeted gene modification in mismatch-repair-deficient embryonic stem cells by single-stranded DNA oligonucleotides
    • Dekker, M., Brouwers, C. and te Riele, H. (2003) Targeted gene modification in mismatch-repair-deficient embryonic stem cells by single-stranded DNA oligonucleotides. Nucleic Acids Res., 31, e27.
    • (2003) Nucleic Acids Res. , vol.31
    • Dekker, M.1    Brouwers, C.2    te Riele, H.3
  • 27
    • 0037297322 scopus 로고    scopus 로고
    • Targeted nucleotide repair of CYC1 mutations in Saccharomyces cerevisiae directed by modified single-stranded DNA oligonucleotides
    • Brachman, E.E. and Kmiec, E.B. (2003) Targeted nucleotide repair of CYC1 mutations in Saccharomyces cerevisiae directed by modified single-stranded DNA oligonucleotides. Genetics, 163, 527-538.
    • (2003) Genetics , vol.163 , pp. 527-538
    • Brachman, E.E.1    Kmiec, E.B.2
  • 28
    • 0029820310 scopus 로고    scopus 로고
    • Differential expression of dystrophin isoforms in strains of mdx mice with different mutations
    • Im, W.B., Phelps, S.F., Copen, E.H., Adams, E.G., Slightom, J.L. and Chamberlain, J.S. (1996) Differential expression of dystrophin isoforms in strains of mdx mice with different mutations. Hum. Mol. Genet., 5, 1149-1153.
    • (1996) Hum. Mol. Genet. , vol.5 , pp. 1149-1153
    • Im, W.B.1    Phelps, S.F.2    Copen, E.H.3    Adams, E.G.4    Slightom, J.L.5    Chamberlain, J.S.6
  • 30
    • 0034611016 scopus 로고    scopus 로고
    • Massive idiosyncratic exon skipping corrects the nonsense mutation in dystrophic mouse muscle and produces functional revertant fibers by clonal expansion
    • Lu, Q.L., Morris, G.E., Wilton, S.D., Ly, T., Artem'yeva, O.V., Strong, P. and Partridge, T.A. (2000) Massive idiosyncratic exon skipping corrects the nonsense mutation in dystrophic mouse muscle and produces functional revertant fibers by clonal expansion. J. Cell Biol., 148, 985-996.
    • (2000) J. Cell Biol. , vol.148 , pp. 985-996
    • Lu, Q.L.1    Morris, G.E.2    Wilton, S.D.3    Ly, T.4    Artem'yeva, O.V.5    Strong, P.6    Partridge, T.A.7
  • 31
    • 0026638903 scopus 로고
    • The frequency of revertants in mdx mouse genetic models for Duchenne muscular dystrophy
    • Danko, I., Chapman, V. and Wolff, J.A. (1992) The frequency of revertants in mdx mouse genetic models for Duchenne muscular dystrophy. Pediatr. Res., 32, 128-131.
    • (1992) Pediatr. Res. , vol.32 , pp. 128-131
    • Danko, I.1    Chapman, V.2    Wolff, J.A.3
  • 33
    • 0036460362 scopus 로고    scopus 로고
    • Mechanisms underlying targeted gene correction using chimeric RNA/DNA and single-stranded DNA oligonucleotides
    • Andersen, M.S., Sorensen, C.B., Bolund, L. and Jensen, T.G. (2002) Mechanisms underlying targeted gene correction using chimeric RNA/DNA and single-stranded DNA oligonucleotides. J. Mol. Med., 80, 770-781.
    • (2002) J. Mol. Med. , vol.80 , pp. 770-781
    • Andersen, M.S.1    Sorensen, C.B.2    Bolund, L.3    Jensen, T.G.4
  • 34
    • 0036097061 scopus 로고    scopus 로고
    • Strand bias in targeted gene repair is influenced by transcriptional activity
    • Liu, L., Rice, M.C., Drury, M., Cheng, S., Gamper, H. and Kmiec, E.B. (2002) Strand bias in targeted gene repair is influenced by transcriptional activity. Mol. Cell Biol., 22, 3852-3863.
    • (2002) Mol. Cell Biol. , vol.22 , pp. 3852-3863
    • Liu, L.1    Rice, M.C.2    Drury, M.3    Cheng, S.4    Gamper, H.5    Kmiec, E.B.6
  • 36
    • 0033575886 scopus 로고    scopus 로고
    • The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites
    • Hendrich, B., Hardeland, U., Ng, H.H., Jiricny, J. and Bird, A. (1999) The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites. Nature, 401, 301-304.
    • (1999) Nature , vol.401 , pp. 301-304
    • Hendrich, B.1    Hardeland, U.2    Ng, H.H.3    Jiricny, J.4    Bird, A.5
  • 37
    • 0032007205 scopus 로고    scopus 로고
    • Muscle cells from mdx mice have an increased susceptibility to oxidative stress
    • Rando, T.A., Disatnik, M.H., Yu, Y. and Franco, A. (1998) Muscle cells from mdx mice have an increased susceptibility to oxidative stress. Neuromuscul. Disord., 8, 14-21.
    • (1998) Neuromuscul. Disord. , vol.8 , pp. 14-21
    • Rando, T.A.1    Disatnik, M.H.2    Yu, Y.3    Franco, A.4
  • 39
    • 0031826294 scopus 로고    scopus 로고
    • A new blocking method for application of murine monoclonal antibody to mouse tissue sections
    • Lu, Q.L. and Partridge, T.A. (1998) A new blocking method for application of murine monoclonal antibody to mouse tissue sections. J. Histochem. Cytochem., 46, 977-984.
    • (1998) J. Histochem. Cytochem. , vol.46 , pp. 977-984
    • Lu, Q.L.1    Partridge, T.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.