Molecular Dynamics Simulations of DNA Curvature and Flexibility: Helix Phasing and Premelting

Biopolymers

Volumn 73, Issue 3, 2004, Pages 380-403

  Beveridge, D L ^a   Dixit, Surjit B ^a   Barreiro, Gabriela ^a   Thayer, Kelly M ^a  

^a WESLEYAN UNIVERSITY   (United States)

Author keywords

Curvature; Flexibility; Molecular dynamics simulations; junction model; A tracts; Non A tract model; Sequence effects; Wedge model

Indexed keywords

COMPUTATIONAL METHODS; COMPUTER SIMULATION; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DNA; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE;

NUCLEAR OVERHAUSER EFFECT (NOE); OLIGONUCLEOTIDES;

BIOPOLYMERS;

ADENINE; CURVED DNA; CYTOSINE; GUANINE; PURINE; PYRIMIDINE; THYMIDINE; WATER;

AQUEOUS SOLUTION; CALCULATION; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DNA HELIX; DNA SEQUENCE; DNA STRUCTURE; MATHEMATICAL MODEL; MELTING POINT; MOLECULAR DYNAMICS; MOLECULAR MODEL; NUCLEAR MAGNETIC RESONANCE; PHENOMENOLOGY; PREDICTION; REVIEW; TEMPERATURE; VALIDATION PROCESS;

BASE SEQUENCE; CRYSTALLOGRAPHY, X-RAY; DNA; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; OLIGODEOXYRIBONUCLEOTIDES; THERMODYNAMICS;

NON-A, NON-B HEPATITIS VIRUS;

EID: 1242269406     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/bip.20019     Document Type: Review

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