Relating independent measures of dna curvature: Electrophoretic anomaly and cyclization efficiency

Journal of Biomolecular Structure and Dynamics

Volumn 18, Issue 2, 2000, Pages 219-230

  Hardwidge, Philip R ^a   Den, Robert B ^a   Ross, Eric D ^a   Maher, L James ^a  

^a MAYO GRADUATE SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR DNA; DNA; POLYACRYLAMIDE GEL;

ANALYTIC METHOD; ARTICLE; CALIBRATION; COMPARATIVE STUDY; CORRELATION FUNCTION; CYCLIZATION; DNA STRUCTURE; ELECTROPHORESIS; MEASUREMENT; PRIORITY JOURNAL; PROTEIN DNA BINDING; QUANTITATIVE ASSAY;

BASE SEQUENCE; CALIBRATION; DNA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EXONUCLEASES; MAGNESIUM; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES;

EID: 0033730618     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2000.10506660     Document Type: Article

References (32)

1. Crothers, D. M., and Drak, J., 1992. Meth. Enzymol., 212:46–71.
2. Ross, E. D., Den, R. B., Hardwidge, P. R., and Maher, L. J., 1999. Nucleic Acids Res., 27:4135–4142.
3. Zinkel, S. S., and Crothers, D. M., 1990. Biopolymers, 29:29–38.
4. Rice, J. A., Crothers, D. M., Pinto, A. L., and Lippard, S. J., 1988. Proc. Natl Acad. Sci. USA, 85 (12):4158–4161.
5. Rice, J. A., and Crothers, D. M., 1989. Biochemistry, 28:4512–4526.
6. Jacobson, H., and Stockmayer, W. H., 1950. J. Chem. Phys., 18:1600–1606.
7. Shore, D., Langowski, J., and Baldwin, R. L., 1981. Proc. Natl Acad. Sci. USA, 78:4833–4837.
8. Shore, D., and Baldwin, R. L., 1983. J. Mol. Biol., 170:957–981.
9. Dripps, D., and Wartell, R. M., 1987. J. Biomol. Struct. Dyn., 5:1–13.
10. Kahn, J. D., and Crothers, D. M., 1992. Proc. Natl Acad. Sci. USA, 89:6343–6347.
11. Kahn, J. D., and Crothers, D. M., 1998. J. Mol. Biol., 276:287–309.
12. Ulanovsky, L., Bodner, M., Trifonov, E. N., and Choder, M., 1986. Proc. Natl Acad. Sci. USA, 83:862–866.
13. Harrington, R. E., 1993. Electrophoresis, 14:732–746.
14. Salzberg, A. A., and Dedon, P. C., 1997. J. Biomol. Struct. Dyn., 15:277–284.
15. Lyubchenko, Y., Shlyakhtenko, L., Chernov, B., and Harrington, R. E., 1991. Proc. Natl Acad. Sci. USA, 88:5331–5334.
16. Salzberg, A. A., and Dedon, P. C., 2000. Biochemistry, 39:7605–7612.
17. Hagerman, P., and Ramadevi, V., 1990. J. Mol. Biol., 212:351–362.
18. Diekmann, S., and Wang, J. C., 1985. J. Mol. Biol., 186:1–11.
19. Diekmann, S., 1987. Nucleic Acids Res., 15:247–265.
20. Puglisi, J. D., and Tinoco, I., 1989. Meth. Enzymol., 180:304–325.
21. Veenstra, T. D., Benson, L. M., Craig, T. A., Tomlinson, A. J., Kumar, R., and Naylor, S., 1998. Nature Biotech., 16:262–266.
22. Tomky, L. A., Srauss-Soukup, J. K., and Maher, L. J., 1998. Nucleic Acids Res., 26:2298–2305.
23. Koo, H.-S., and Crothers, D. M., 1988. Proc. Natl Acad. Sci. USA, 85:1763–1767.
24. Strauss, J. K., Prakash, T. P., Roberts, C., Switzer, C., and Maher, L. J., 1996. Chem. and Biol., 3:671–678.
25. Shimada, J., and Yamakawa, H., 1984. Macromolecules, 17:689–698.
26. Rippe, K., vonHippel, P. H., and Langowski, J., 1995. Trends Biol. Sci., 20:500–506.
27. Zahn, K., and Blattner, F. R., 1987. Science, 236:416–422.
28. Husain, I., Griffith, J., and Sancar, A., 1988. Proc. Natl Acad. Sci. USA, 85:2558–2562.
29. Lee, B. J., Sakashita, H., Ohkubo, T., Ikehara, M., Doi, T., Morikawa, K., Kyogoku, Y., Osafune, T., Iwai, S., and Ohtsuka, E., 1994. Biochemistry, 33:57–64.
30. Raghunathan, G., Kieber-Emmons, T., Rein, R., and Alderfer, J. L., 1990. J. Biomol. Struct. Dyn., 7:899–913.
31. Rao, S. N., Keepers, J. W., and Kollman, P., 1984. Nucleic Acids Res., 12:4789–4807.
32. Erie, D. A., Yang, G., Schultz, H. C., and Bustamante, C., 1994. Science, 266:1562–1566.