Deciphering the code of silence: Mechanisms of gene repression with connections to human disease

Chemtracts

Volumn 17, Issue 6, 2004, Pages 308-324

  Norwood, Laura E ^a   Hines, Karrie A ^a   Wallrath, Lori L ^a,b  

^a UNIVERSITY OF IOWA   (United States)

^b UNIVERSITY OF IOWA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME PROTEIN; HISTONE; NONHISTONE PROTEIN; SMALL INTERFERING RNA; TRANSCRIPTION FACTOR; UNTRANSLATED RNA;

CHROMATIN; CHROMATIN STRUCTURE; DNA METHYLATION; EPIGENETICS; GENE EXPRESSION REGULATION; GENE INACTIVATION; GENE REPRESSION; GENE SILENCING; GENOME IMPRINTING; HETEROCHROMATIN; HUMAN; NONHUMAN; POSITION EFFECT VARIEGATION; REVIEW; RNA INTERFERENCE; RNA SYNTHESIS; X CHROMOSOME;

EID: 10844294401     PISSN: 14319268     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (91)

1. Stargell, L.A., Struhl, K. Trends Genet. 1996, 12, 311.
2. Muller, H.J. J. Genet. 1930, 22, 299.
3. Weiler, K.S., Wakimoto, B. T. Annu Rev Genet, 1995, 29, 577.
4. Grigliatti, T. Methods Cell Biol. 1991, 35, 587.
5. Reuter, G., Spierer, P. Bioessays 1992, 14, 605.
6. Allshire, R.C., Javerzat, J.P., Redhead, N.J., Cranston, G. Cell 1994, 76, 157.
7. Ayoub, N., Goldshmidt, I., Cohen, A. Genetics 1999, 152, 495.
8. Gottschling, D.E., Aparicio, O.M., Billington, B.L., Zakian, V.A. Cell 1990, 63, 751.
9. Festenstein, R., Sharghi-Namini, S., Fox, M., Roderick, K., Tolaini, M., Norton, T., Saveliev, A., Kioussis, D., Singh, P. Nat. Genet. 1999, 23, 457.
10. Saveliev, A., Everett, C., Sharpe, T., Webster, Z., Festenstein, R. Nature 2003, 422, 909.
11. Park, Y., Kuroda, M.I. Science 2001, 293, 1083.
12. Barr, M.L. Int. Rev. Cytol. 1966, 19, 35.
13. Chadwick, B.P., Willard, H.F. Hum. Mol. Genet. 2003, 12, 2167.
14. Brown, C.J., Greally, J.M. Trends Genet. 2003, 19, 432.
15. Brown, C.J., Robinson, W.P. Clin. Genet. 2000, 58, 353.
16. Burn, J., Povey, S., Boyd, Y., Munro, E.A., West, L., Harper, K., Thomas, D. J. Med. Genet. 1986, 23, 494.
17. Scott, R.J., Spielman, M. Curr. Biol. 2004, 14, R201.
18. Walter, J., Paulsen, M. Hum. Mol. Genet. 2003, 12 Spec No 2, R215.
19. Walter, J., Paulsen, M. Semin. Cell Dev. Biol. 2003, 14, 101.
20. Verona, R.I., Mann, M.R., Bartolomei, M.S. Annu. Rev. Cell Dev. Biol. 2003, 19, 237.
21. Khorasanizadeh, S. Cell 2004, 116, 259.
22. Wolffe, A.P., Khochbin, S., Dimitrov, S. Bioessays 1997, 19, 249.
23. Grigoryev, S.A. FEBS Lett. 2004, 564, 4.
24. Hill, R.J., Watt, F., Wilson, C.M., Fifis, T., Underwood, P.A., Tribbick, G., Geysen, H.M., Thomas, J.O. Chromosoma 1989, 98, 411.
25. Cryderman, D.E., Tang, H., Bell, C., Gilmour, D.S., Wallrath, L.L. Nucleic Acids Res. 1999, 27, 3364.
26. Edmondson, D.G., Roth, S.Y. FASEB J. 1996, 10, 1173.
27. Li, Q., Wrange, O., Eriksson, P. Int. J. Biochem. Cell Biol. 1997, 29, 731.
28. Wallrath, L.L. Curr. Opin. Genet. Dev. 1998, 8, 147.
29. Wang, Y., Fischle, W., Cheung, W., Jacobs, S., Khorasanizadeh, S., Allis, C.D. Novartis Found Symp. 2004, 259, 3.
30. Osley, M.A. Biochim. Biophys Acta 2004, 1677, 74.
31. Jenuwein, T., Allis, C.D. Science 2001, 293, 1074.
32. Kurdistani, S.K., Grunstein, M. Nat. Rev. Mol. Cell Biol. 2003, 4, 276.
33. Wade, P.A. Bioessays 2001, 23, 1131.
34. Freitag, M., Hickey, P.C., Khlafallah, T.K., Read, N.D., Selker, E.U. Mol. Cell 2004, 13, 427.
35. Soppe, W.J., Jasencakova, Z., Houben, A., Kakutani, T., Meister, A., Huang, M.S., Jacobsen, S.E., Schubert, I., Fransz, P.F. EMBO J. 2002, 21, 6549.
36. Cervoni, N., Szyf, M. J. Biol. Chem. 2001, 276, 40778.
37. Ehrenhofer-Murray, A.E. Eur. J. Biochem. 2004, 271, 2335.
38. Dhalluin, C., Carlson, J.E., Zeng, L., He, C., Aggarwal, A.K., Zhou, M.M. Nature 1999, 399, 491.
39. Bottomley, M.J. EMBO Rep. 2004, 5, 464.
40. Marmorstein, R., Berger, S.L. Gene 2001, 272, 1.
41. Mujtaba, S., He, Y., Zeng, L., Yan, S., Plotnikova, O., Sachchidanand, Sanchez, R., Zeleznik-Le, N.J., Ronai, Z., Zhou, M.M. Mol. Cell. 2004, 13, 251.
42. Eissenberg, J.C., James, T.C., Foster-Hartnett, D.M., Hartnett, T., Ngan, V., Elgin, S.C. Proc. Natl. Acad. Sci. USA 1990, 87, 9923.
43. Lewis, E.B. Nature 1978, 276, 565.
44. Eissenberg, J.C., Elgin, S.C. Curr. Opin. Genet. Dev. 2000, 10, 204.
45. Lachner, M., O'Carroll, D., Rea, S., Mechtler, K., Jenuwein, T. Nature 2001, 410, 116.
46. Bannister, A.J., Zegerman, P., Partridge, J.F., Miska, E.A., Thomas, J.O., Allshire, R.C., Kouzarides, T. Nature 2001, 410, 120.
47. Greil, F., van der Kraan, I., Delrow, J., Smothers, J.F., de Wit, E., Bussemaker, H.J., van Driel, R., Henikoff, S., van Steensel, B. Genes Dev. 2003, 17, 2825.
48. Li, Y., Kirschmann, D.A., Wallrath, L.L. Proc. Natl. Acad. Sci. USA 2002, 99(Suppl 4), 16462.
49. Perrini, B., Piacentini, L., Fanti, L., Altieri, F., Chichiarelli, S., Berloco, M., Turano, C., Ferraro, A., Pimpinelli, S. Mol. Cell. 2004, 15, 467.
50. Thiru, A., Nietlispach, D., Mott, H.R., Okuwaki, M., Lyon, D., Nielsen, P.R., Hirshberg, M., Verreault, A., Murzina, N.V., Laue, E.D. EMBO J. 2004, 23, 489.
51. Brasher, S.V., Smith, B.O., Fogh, R.H., Nietlispach, D., Thiru, A., Nielsen, P.R., Broadhurst, R.W., Ball, L.J., Murzina, N.V., Laue, E.D. EMBO J. 2000, 19, 1587.
52. Smothers, J.F., Henikoff, S. Mol. Cell. Biol. 2001, 21, 2555.
53. Badugu, R., Shareef, M.M., Kellum, R. J. Biol. Chem. 2003, 278, 34491.
54. Nielsen, A.L., Oulad-Abdelghani, M., Ortiz, J.A., Remboutsika, E., Chambon, P., Losson, R. Mol. Cell. 2001, 7, 729.
55. Zhang, C.L., McKinsey, T.A., Olson, E.N. Mol. Cell. Biol. 2002, 22, 7302.
56. Meehan, R.R., Kao, C.F., Pennings, S. EMBO J. 2003, 22, 3164.
57. Muchardt, C., Guilleme, M., Seeler, J.S., Trouche, D., Dejean, A., Yaniv, M. EMBO Rep. 2002, 3, 975.
58. Cowieson, N.P., Partridge, J.F., Allshire, R.C., McLaughlin, P.J. Curr. Biol. 2000, 10, 517.
59. Ayyanathan, K., Lechner, M.S., Bell, P., Maul, G.G., Schultz, D.C., Yamada, Y., Tanaka, K., Torigoe, K., Rauscher, F.J., III. Genes Dev. 2003, 17, 1855.
60. Murzina, N., Verreault, A., Laue, E., Stillman, B. Mol. Cell. 1999, 4, 529.
61. Ye, Q., Worman, H.J. J. Biol. Chem. 1996, 271, 14653.
62. Wallrath, L.L., Elgin, S.C. Genes Dev. 1995, 9, 1263.
63. Sun, F.L., Cuaycong, M.H., Elgin, S.C. Mol. Cell. Biol. 2001, 21, 2867.
64. Cryderman, D.E., Cuaycong, M.H., Elgin, S.C., Wallrath, L.L. Chromosoma 1998, 107, 277.
65. Komura, J., Sheardown, S.A., Brockdorff, N., Singer-Sam, J., Riggs, A.D. J. Biol. Chem. 1997, 272, 10975.
66. Li, Y., Danzer, J.R., Alvarez, P., Belmont, A.S., Wallrath, L.L. Development 2003, 130, 1817.
67. Danzer, J.R., Wallrath, L.L. Development 2004, 131, 3571.
68. Min, J., Zhang, Y., Xu, R.M. Genes Dev. 2003, 17, 1823.
69. Muller, J., Hart, C.M., Francis, N.J., Vargas, M.L., Sengupta, A., Wild, B., Miller, E.L., O'Connor, M.B., Kingston, R.E., Simon, J.A. Cell 2002, 111, 197.
70. Cao, R., Wang, L., Wang, H., Xia, L., Erdjument-Bromage, H., Tempst, P., Jones, R.S., Zhang, Y. Science 2002, 298, 1039.
71. Kuzmichev, A., Nishioka, K., Erdjument-Bromage, H., Tempst, P., Reinberg, D. Genes Dev. 2002, 16, 2893.
72. Dellino, G.I., Schwartz, Y.B., Farkas, G., McCabe, D., Elgin, S.C., Pirrotta, V. Mol. Cell. 2004, 13, 887.
73. Jones, D.O., Cowell, I.G., Singh, P.B. Bioessays 2000, 22, 124.
74. Lee, J.T., Davidow, L.S., Warshawsky, D. Nat. Genet. 1999, 21, 400.
75. Silva, J., Mak, W., Zvetkova, I., Appanah, R., Nesterova, T.B., Webster, Z., Peters, H., Jenuwein, T., Otte, A.P., Brockdorff, N. Dev. Cell. 2003, 4, 481.
76. Plath, K., Fang, J., Mlynarczyk-Evans, S.K., Cao, R., Worringer, K.A., Wang, H., de la Cruz, C.C., Otte, A.P., Panning, B., Zhang, Y. Science 2003, 300, 131.
77. Hall, L.L., Lawrence, J.B. Semin Cell. Dev. Biol. 2003, 14, 369.
78. Sleutels, F., Zwart, R., Barlow, D.P. Nature 2002, 415, 810.
79. Sleutels, F., Tjon, G., Ludwig, T., Barlow, D.P. EMBO J. 2003, 22, 3696.
80. Yang, Y., Li, T., Vu, T.H., Ulaner, G.A., Hu, J.F., Hoffman, A.R. Endocrinology 2003, 144, 5658.
81. Mager, J., Montgomery, N.D., de Villena, F.P., Magnuson, T. Nat. Genet. 2003, 33, 502.
82. Guo, S., Kemphues, K.J. Cell 1995, 81, 611.
83. Fire, A., Xu, S., Montgomery, M.K., Kostas, S.A., Driver, S.E., Mello, C.C. Nature 1998, 391, 806.
84. Denli, A.M., Hannon, G.J. Trends Biochem. Sci. 2003, 28, 196.
85. Gvozdev, V.A., Aravin, A.A., Abramov, Y.A., Klenov, M.S., Kogan, G.L., Lavrov, S.A., Naumova, N.M., Olenkina, O.M., Tulin, A.V., Vagin, V.V. Genetica 2003, 117, 239.
86. Aravin, A.A., Klenov, M.S., Vagin, V.V., Bantignies, F., Cavalli, G., Gvozdev, V.A. Mol. Cell. Biol. 2004, 24, 6742.
87. Grewal, S.I., Rice, J.C. Curr. Opin. Cell. Biol. 2004, 16, 230.
88. Pal-Bhadra, M., Leibovitch, B.A., Gandhi, S.G., Rao, M., Bhadra, U., Birchler, J., Elgin, S.C. Science 2004, 303, 669.
89. Freitas, M.A., Sklenar, A.R., Parthun, M.R. J. Cell. Biochem. 2004, 92, 691.
90. Syka, J.E., Marto, J.A., Bai, D.L., Horning, S., Senko, M.W., Schwartz, J.C., Ueberheide, B., Garcia, B., Busby, S., Muratore, T., Shabanowitz, J., Hunt, D.F. J. Proteome Res. 2004, 3, 621.
91. Pederson, T. Curr. Opin. Genet Dev. 2004, 14, 203.