-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
3
-
-
0036958494
-
T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites
-
Brunaud V, Balzergue S, Dubreucq B, Aubourg S, Samson F, Chauvin S, Bechtold N, Cruaud C, DeRose R, Pelletier G et al. (2002) T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites. EMBO Rep 3: 1152-1157
-
(2002)
EMBO Rep
, vol.3
, pp. 1152-1157
-
-
Brunaud, V.1
Balzergue, S.2
Dubreucq, B.3
Aubourg, S.4
Samson, F.5
Chauvin, S.6
Bechtold, N.7
Cruaud, C.8
DeRose, R.9
Pelletier, G.10
-
4
-
-
0030446310
-
Integration of Agrobacterium tumefaciens T-DNA in the Saccharomyces cerevisiae genome by illegitimate recombination
-
Bundock P, Hooykaas PJJ (1996) Integration of Agrobacterium tumefaciens T-DNA in the Saccharomyces cerevisiae genome by illegitimate recombination. Proc Natl Acad Sci USA 93: 15272-15275
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 15272-15275
-
-
Bundock, P.1
Hooykaas, P.J.J.2
-
6
-
-
0034111105
-
Determination of the T-DNA transfer and the T-DNA integration frequencies upon cocultivation of Arabidopsis thaliana root explants
-
De Buck S, De Wilde C, Van Montagu M, Depicker A (2000) Determination of the T-DNA transfer and the T-DNA integration frequencies upon cocultivation of Arabidopsis thaliana root explants. Mol Plant-Microbe Interact 13: 658-665
-
(2000)
Mol Plant-Microbe Interact
, vol.13
, pp. 658-665
-
-
De Buck, S.1
De Wilde, C.2
Van Montagu, M.3
Depicker, A.4
-
7
-
-
0033231623
-
The DNA sequences of T-DNA junctions suggest that complex T-DNA loci are formed by a recombination process resembling T-DNA integration
-
De Buck S, Jacobs A, Van Montagu M, Depicker A (1999) The DNA sequences of T-DNA junctions suggest that complex T-DNA loci are formed by a recombination process resembling T-DNA integration. Plant J 20: 295-304
-
(1999)
Plant J
, vol.20
, pp. 295-304
-
-
De Buck, S.1
Jacobs, A.2
Van Montagu, M.3
Depicker, A.4
-
8
-
-
0031030679
-
T-DNA integration patterns in co-transformed plant cells suggest that T-DNA repeats originate from ligation of separate T-DNAs
-
De Neve M, De Buck S, Jacobs A, Van Montagu M, Depicker A (1997) T-DNA integration patterns in co-transformed plant cells suggest that T-DNA repeats originate from ligation of separate T-DNAs. Plant J 11: 15-29
-
(1997)
Plant J
, vol.11
, pp. 15-29
-
-
De Neve, M.1
De Buck, S.2
Jacobs, A.3
Van Montagu, M.4
Depicker, A.5
-
9
-
-
0032903846
-
Gene stability in transgenic aspen (Populus): I. Flanking DNA sequences and T-DNA structure
-
Fladung M (1999) Gene stability in transgenic aspen (Populus): I. Flanking DNA sequences and T-DNA structure. Mol Gen Genet 260: 574-581
-
(1999)
Mol Gen Genet
, vol.260
, pp. 574-581
-
-
Fladung, M.1
-
10
-
-
0037854725
-
Ku80- and DNA ligase IV-deficient plants are sensitive to ionizing radiation and defective in T-DNA integration
-
Friesner J, Britt AB (2003) Ku80- and DNA ligase IV-deficient plants are sensitive to ionizing radiation and defective in T-DNA integration. Plant J 34: 427-140
-
(2003)
Plant J
, vol.34
, pp. 427-1140
-
-
Friesner, J.1
Britt, A.B.2
-
11
-
-
0141681150
-
Ku80 plays a role in non-homologous recombination but is not required for T-DNA integration in Arabidopsis
-
Gallego ME, Bleuyard J-Y, Daoudal-Cotterell S, Jallut N, White CI (2003) Ku80 plays a role in non-homologous recombination but is not required for T-DNA integration in Arabidopsis. Plant J 35: 557-565
-
(2003)
Plant J
, vol.35
, pp. 557-565
-
-
Gallego, M.E.1
Bleuyard, J.-Y.2
Daoudal-Cotterell, S.3
Jallut, N.4
White, C.I.5
-
12
-
-
0035121038
-
Disruption of the Arabidopsis RAD50 gene leads to plant sterility and MMS sensitivity
-
Gallego ME, Jeanneau M, Granier F, Bouchez D, Bechtold N, White CI (2001) Disruption of the Arabidopsis RAD50 gene leads to plant sterility and MMS sensitivity. Plant J 25: 31-11
-
(2001)
Plant J
, vol.25
, pp. 31-111
-
-
Gallego, M.E.1
Jeanneau, M.2
Granier, F.3
Bouchez, D.4
Bechtold, N.5
White, C.I.6
-
13
-
-
0037337257
-
Agrobacterium-mediated plant transformation: The biology behind the "gene-jockeying" tool
-
Gelvin SB (2003) Agrobacterium-mediated plant transformation: the biology behind the "gene-jockeying" tool. Microbiol Mol Biol Rev 67: 16-37
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, pp. 16-37
-
-
Gelvin, S.B.1
-
14
-
-
85127630528
-
Agrobacterium-mediated plant transformation: A scientifically intriguing story with significant applications
-
K Lindsey, ed, Harwood Academic Publishers, Amsterdam
-
Gheysen G, Angenon G, Van Montagu M (1998) Agrobacterium-mediated plant transformation: a scientifically intriguing story with significant applications. In K Lindsey, ed, Transgenic Plant Research, Harwood Academic Publishers, Amsterdam, pp 1-33
-
(1998)
Transgenic Plant Research
, pp. 1-33
-
-
Gheysen, G.1
Angenon, G.2
Van Montagu, M.3
-
15
-
-
0026073574
-
Illegitimate recombination in plants: A model for T-DNA integration
-
Gheysen G, Villarroel R, Van Montagu M (1991) Illegitimate recombination in plants: a model for T-DNA integration. Genes Dev 5: 287-297
-
(1991)
Genes Dev
, vol.5
, pp. 287-297
-
-
Gheysen, G.1
Villarroel, R.2
Van Montagu, M.3
-
16
-
-
0030813154
-
Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions
-
Gorbunova V, Levy AA (1997) Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions. Nucleic Acids Res 25: 4650-4657
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4650-4657
-
-
Gorbunova, V.1
Levy, A.A.2
-
17
-
-
0033057606
-
How plants make ends meet: DNA double-strand break repair
-
Gorbunova V, Levy AA (1999) How plants make ends meet: DNA double-strand break repair. Trends Plant Sci 4: 263-269
-
(1999)
Trends Plant Sci
, vol.4
, pp. 263-269
-
-
Gorbunova, V.1
Levy, A.A.2
-
18
-
-
0002464569
-
Isolation of the complete cDNA of the Mre11 homologue in Arabidopsis (Accession No. AJ243822) indicates conservation of DNA recombination mechanisms between plants and other eukaryotes (PGR 99-132)
-
Hartung F, Puchta H (1999) Isolation of the complete cDNA of the Mre11 homologue in Arabidopsis (Accession No. AJ243822) indicates conservation of DNA recombination mechanisms between plants and other eukaryotes (PGR 99-132). Plant Physiol 121: 311
-
(1999)
Plant Physiol
, vol.121
, pp. 311
-
-
Hartung, F.1
Puchta, H.2
-
19
-
-
0035180589
-
The Arabidopsis Information Resource (TAIR): A comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
-
Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W et al. (2001) The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res 29: 102-105
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 102-105
-
-
Huala, E.1
Dickerman, A.W.2
Garcia-Hernandez, M.3
Weems, D.4
Reiser, L.5
LaFond, F.6
Hanley, D.7
Kiphart, D.8
Zhuang, M.9
Huang, W.10
-
20
-
-
0034675997
-
Species-specific double-strand break repair and genome evolution in plants
-
Kirik A, Salomon S, Puchta H (2000) Species-specific double-strand break repair and genome evolution in plants. EMBO J 19: 5562-5566
-
(2000)
EMBO J
, vol.19
, pp. 5562-5566
-
-
Kirik, A.1
Salomon, S.2
Puchta, H.3
-
21
-
-
0036689386
-
Transgene integration in aspen: Structures of integration sites and mechanism of T-DNA integration
-
Kumar S, Fladung M (2002) Transgene integration in aspen: structures of integration sites and mechanism of T-DNA integration. Plant J 31: 543-551
-
(2002)
Plant J
, vol.31
, pp. 543-551
-
-
Kumar, S.1
Fladung, M.2
-
22
-
-
0036407705
-
Characterization of T-DNA insertion sites in Arabidopsis thaliana and the implications for saturation mutagenesis
-
Krysan PJ, Young JC, Jester PJ, Monson S, Copenhaver G, Preuss D, Sussman MR (2002) Characterization of T-DNA insertion sites in Arabidopsis thaliana and the implications for saturation mutagenesis. OMICS 6: 163-174
-
(2002)
OMICS
, vol.6
, pp. 163-174
-
-
Krysan, P.J.1
Young, J.C.2
Jester, P.J.3
Monson, S.4
Copenhaver, G.5
Preuss, D.6
Sussman, M.R.7
-
23
-
-
0025653184
-
Integration of Agrobacterium T-DNA into a tobacco chromosome: Possible involvement of DNA homology between T-DNA and plant DNA
-
Matsumoto S, Ito Y, Hosoi T, Takahashi Y, Machida Y (1990) Integration of Agrobacterium T-DNA into a tobacco chromosome: possible involvement of DNA homology between T-DNA and plant DNA. Mol Gen Genet 224: 309-316
-
(1990)
Mol Gen Genet
, vol.224
, pp. 309-316
-
-
Matsumoto, S.1
Ito, Y.2
Hosoi, T.3
Takahashi, Y.4
Machida, Y.5
-
24
-
-
0026096528
-
T-DNA integration: A mode of illegitimate recombination in plants
-
Mayerhofer R, Koncz-Kalman Z, Nawrath C, Bakkeren G, Crameri A, Angelis K, Redei GP, Schell J, Hohn B, Koncz C (1991) T-DNA integration: a mode of illegitimate recombination in plants. EMBO J 10: 697-704
-
(1991)
EMBO J
, vol.10
, pp. 697-704
-
-
Mayerhofer, R.1
Koncz-Kalman, Z.2
Nawrath, C.3
Bakkeren, G.4
Crameri, A.5
Angelis, K.6
Redei, G.P.7
Schell, J.8
Hohn, B.9
Koncz, C.10
-
25
-
-
18644369103
-
Analyses of single-copy Arabidopsis T-DNA transformed lines show that the presence of vector backbone sequences, short inverted repeats and DNA methylation is not sufficient or necessary for the induction of transgene silencing
-
Meza TJ, Stangeland B, Mercy IS, Skårn M, Nymoen DA, Berg A, Butenko MA, Håkelien A-M, Haslekås C, Meza-Zepeda LA et al. (2002) Analyses of single-copy Arabidopsis T-DNA transformed lines show that the presence of vector backbone sequences, short inverted repeats and DNA methylation is not sufficient or necessary for the induction of transgene silencing. Nucleic Acids Res 30: 4556-4566
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4556-4566
-
-
Meza, T.J.1
Stangeland, B.2
Mercy, I.S.3
Skårn, M.4
Nymoen, D.A.5
Berg, A.6
Butenko, M.A.7
Håkelien, A.-M.8
Haslekås, C.9
Meza-Zepeda, L.A.10
-
26
-
-
0037342581
-
Differences in the processing of DNA ends in Arabidopsis thaliana and tobacco: Possible implications for genome evolution
-
Orel N, Puchta H (2003) Differences in the processing of DNA ends in Arabidopsis thaliana and tobacco: possible implications for genome evolution. Plant Mol Biol 51: 523-531
-
(2003)
Plant Mol Biol
, vol.51
, pp. 523-531
-
-
Orel, N.1
Puchta, H.2
-
27
-
-
0033855389
-
Mechanisms of DNA double-strand break repair and their potential to induce chromosomal aberrations
-
Pfeiffer P, Goedecke W, Obe G (2000) Mechanisms of DNA double-strand break repair and their potential to induce chromosomal aberrations. Mutagenesis 15: 289-302
-
(2000)
Mutagenesis
, vol.15
, pp. 289-302
-
-
Pfeiffer, P.1
Goedecke, W.2
Obe, G.3
-
28
-
-
0024003767
-
Sequence of three bronze alleles of maize and correlation with the genetic fine structure
-
Ralston EJ, English JJ, Dooner HK (1988) Sequence of three bronze alleles of maize and correlation with the genetic fine structure. Genetics 119: 185-197
-
(1988)
Genetics
, vol.119
, pp. 185-197
-
-
Ralston, E.J.1
English, J.J.2
Dooner, H.K.3
-
29
-
-
0031467948
-
Comparative analysis of non-random repair following Ac transposon excision in maize and Arabidopsis
-
Rinehart TA, Dean C, Weill CF (1997) Comparative analysis of non-random repair following Ac transposon excision in maize and Arabidopsis. Plant J 12: 1419-1427
-
(1997)
Plant J
, vol.12
, pp. 1419-1427
-
-
Rinehart, T.A.1
Dean, C.2
Weill, C.F.3
-
30
-
-
0022256461
-
Mechanisms of nonhomologous recombination in mammalian cells
-
Roth DB, Porter TN, Wilson JH (1985) Mechanisms of nonhomologous recombination in mammalian cells. Mol Cell Biol 5: 2599-2607
-
(1985)
Mol Cell Biol
, vol.5
, pp. 2599-2607
-
-
Roth, D.B.1
Porter, T.N.2
Wilson, J.H.3
-
31
-
-
0022976432
-
Nonhomologous recombination in mammalian cells: Role for short sequence homologies in the joining reaction
-
Roth DB, Wilson JH (1986) Nonhomologous recombination in mammalian cells: role for short sequence homologies in the joining reaction. Mol Cell Biol 6: 4295-4304
-
(1986)
Mol Cell Biol
, vol.6
, pp. 4295-4304
-
-
Roth, D.B.1
Wilson, J.H.2
-
32
-
-
0032531757
-
Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells
-
Salomon S, Puchta H (1998) Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells. EMBO J 17: 6086-6095
-
(1998)
EMBO J
, vol.17
, pp. 6086-6095
-
-
Salomon, S.1
Puchta, H.2
-
33
-
-
0035986781
-
Identification of Ku70 and Ku80 homologues in Arabidopsis thaliana: Evidence for a role in the repair of DNA double-stranded breaks
-
Tamura K, Adachi Y, Chiba K, Aguchi K, Takahashi H (2002) Identification of Ku70 and Ku80 homologues in Arabidopsis thaliana: evidence for a role in the repair of DNA double-stranded breaks. Plant J 29: 771-781
-
(2002)
Plant J
, vol.29
, pp. 771-781
-
-
Tamura, K.1
Adachi, Y.2
Chiba, K.3
Aguchi, K.4
Takahashi, H.5
-
34
-
-
0036120031
-
Identification and characterization of T-DNA inserts by T-DNA fingerprinting
-
Theuns I, Windels P, De Buck S, Depicker A, Van Bockstaele E, De Loose M (2002) Identification and characterization of T-DNA inserts by T-DNA fingerprinting. Euphytica 123: 75-84
-
(2002)
Euphytica
, vol.123
, pp. 75-84
-
-
Theuns, I.1
Windels, P.2
De Buck, S.3
Depicker, A.4
Van Bockstaele, E.5
De Loose, M.6
-
35
-
-
0030157430
-
The integration of T-DNA into plant genomes
-
Tinland B (1996) The integration of T-DNA into plant genomes. Trends Plant Sci 1: 178-184
-
(1996)
Trends Plant Sci
, vol.1
, pp. 178-184
-
-
Tinland, B.1
-
36
-
-
0031878710
-
Double-strand break repair mediated by DNA end-joining
-
Tsukamoto Y, Ikeda H (1998) Double-strand break repair mediated by DNA end-joining. Genes Cells 3: 135-144
-
(1998)
Genes Cells
, vol.3
, pp. 135-144
-
-
Tsukamoto, Y.1
Ikeda, H.2
-
37
-
-
0035890166
-
Non-homologous end-joining proteins are required for Agrobacterium T-DNA integration
-
van Attikum H, Bundock P, Hooykaas PJJ (2001) Non-homologous end-joining proteins are required for Agrobacterium T-DNA integration. EMBO J 20: 6550-6558
-
(2001)
EMBO J
, vol.20
, pp. 6550-6558
-
-
Van Attikum, H.1
Bundock, P.2
Hooykaas, P.J.J.3
-
38
-
-
0242349117
-
The Arabidopsis AtLIG4 gene is required for the repair of DNA damage, but not for the integration of Agrobacterium T-DNA
-
van Attikum H, Bundock P, Overmeer RM, Lee L-Y, Gelvin SB, Hooykaas PJJ (2003) The Arabidopsis AtLIG4 gene is required for the repair of DNA damage, but not for the integration of Agrobacterium T-DNA. Nucleic Acids Res 31: 4247-1255
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4247-11255
-
-
Van Attikum, H.1
Bundock, P.2
Overmeer, R.M.3
Lee, L.-Y.4
Gelvin, S.B.5
Hooykaas, P.J.J.6
-
39
-
-
0007491890
-
Function of heterologous and pseudo border repeats in T region transfer via the octopine virulence system of Agrobacterium tumefaciens
-
Van Haaren MJJ, Sedee NJA, Krul M, Schilperoort RA, Hooykaas PJJ (1988) Function of heterologous and pseudo border repeats in T region transfer via the octopine virulence system of Agrobacterium tumefaciens. Plant Mol Biol 11: 773-781
-
(1988)
Plant Mol Biol
, vol.11
, pp. 773-781
-
-
Van Haaren, M.J.J.1
Sedee, N.J.A.2
Krul, M.3
Schilperoort, R.A.4
Hooykaas, P.J.J.5
-
40
-
-
0025223061
-
Filler DNA is associated with spontaneous deletions in maize
-
Wessler S, Tarpley A, Purugganan M, Spell M, Okagaki R (1990) Filler DNA is associated with spontaneous deletions in maize. Proc Natl Acad Sci USA 87: 8731-8735
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 8731-8735
-
-
Wessler, S.1
Tarpley, A.2
Purugganan, M.3
Spell, M.4
Okagaki, R.5
-
41
-
-
0033775992
-
Arabidopsis DNA ligase IV is induced by γ-irradiation and interacts with an Arabidopsis homologue of the double strand break repair protein XRCC4
-
West CE, Waterworth WM, Jiang Q, Bray CM (2000) Arabidopsis DNA ligase IV is induced by γ-irradiation and interacts with an Arabidopsis homologue of the double strand break repair protein XRCC4. Plant J 24: 67-78
-
(2000)
Plant J
, vol.24
, pp. 67-78
-
-
West, C.E.1
Waterworth, W.M.2
Jiang, Q.3
Bray, C.M.4
-
42
-
-
0000817856
-
Characterisation of the Roundup Ready soybean insert
-
Windels P, Taverniers I, Depicker A, Van Bockstaele E, De Loose M (2001) Characterisation of the Roundup Ready soybean insert. Eur Food Res Technol 213: 107-112
-
(2001)
Eur Food Res Technol
, vol.213
, pp. 107-112
-
-
Windels, P.1
Taverniers, I.2
Depicker, A.3
Van Bockstaele, E.4
De Loose, M.5
-
43
-
-
0344931874
-
Origination of Ds elements from Ac elements in maize: Evidence for rare repair synthesis at the site of Ac excision
-
Yan Y, Martinez-Ferez IM, Kavchok S, Dooner HK (1999) Origination of Ds elements from Ac elements in maize: evidence for rare repair synthesis at the site of Ac excision. Genetics 152: 1733-1740
-
(1999)
Genetics
, vol.152
, pp. 1733-1740
-
-
Yan, Y.1
Martinez-Ferez, I.M.2
Kavchok, S.3
Dooner, H.K.4
-
44
-
-
0033842945
-
Plant enzymes but not Agrobacterium VirD2 mediate T-DNA ligation in vitro
-
Ziemienowicz A, Tinland B, Bryant J, Gloeckler V, Hohn B (2000) Plant enzymes but not Agrobacterium VirD2 mediate T-DNA ligation in vitro. Mol Cell Biol 20: 6317-6322
-
(2000)
Mol Cell Biol
, vol.20
, pp. 6317-6322
-
-
Ziemienowicz, A.1
Tinland, B.2
Bryant, J.3
Gloeckler, V.4
Hohn, B.5
|