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Volumn 20, Issue 3, 1999, Pages 295-304

The DNA sequences of T-DNA junctions suggest that complex T-DNA loci are formed by a recombination process resembling T-DNA integration

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; DELETION MUTAGENESIS; DNA RECOMBINATION; DNA REPAIR; DOUBLE STRANDED DNA; GENETIC TRANSFORMATION; NUCLEOTIDE SEQUENCE; PLANT GENOME; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

EID: 0033231623     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1999.t01-1-00602.x     Document Type: Article
Times cited : (135)

References (43)
  • 1
    • 0026741455 scopus 로고
    • Conjugative transfer by the virulence system of Agrobacterium tumefaciens
    • Beijersbergen, A., den Dulk-Ras, A., Schilperoort, R.A. and Hooykaas, P.J.J. (1992) Conjugative transfer by the virulence system of Agrobacterium tumefaciens. Science, 256, 1324-1327.
    • (1992) Science , vol.256 , pp. 1324-1327
    • Beijersbergen, A.1    Den Dulk-Ras, A.2    Schilperoort, R.A.3    Hooykaas, P.J.J.4
  • 2
    • 0030069685 scopus 로고    scopus 로고
    • DNA rearrangement mediated by inverted repeats
    • Bi, X. and Liu, L.F. (1996) DNA rearrangement mediated by inverted repeats. Proc. Natl Acad. Sci. USA, 93, 819-823.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 819-823
    • Bi, X.1    Liu, L.F.2
  • 3
    • 0030446310 scopus 로고    scopus 로고
    • Integration of Agrobacterium tumefaciens T-DNA in the Saccharomyces cerevisiae genome by illegitimate recombination
    • Bundock, P. and Hooykaas, P.J.J. (1996). Integration of Agrobacterium tumefaciens T-DNA in the Saccharomyces cerevisiae genome by illegitimate recombination. Proc. Natl Acad. Sci. USA, 93, 15272-15275.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 15272-15275
    • Bundock, P.1    Hooykaas, P.J.J.2
  • 4
    • 0021995048 scopus 로고
    • Genetic analysis of integration mediated by single T-DNA borders
    • Caplan, A.B., Van Montagu, M. and Schell, J. (1985) Genetic analysis of integration mediated by single T-DNA borders. J. Bacteriol. 161, 655-664.
    • (1985) J. Bacteriol. , vol.161 , pp. 655-664
    • Caplan, A.B.1    Van Montagu, M.2    Schell, J.3
  • 5
    • 0031554928 scopus 로고    scopus 로고
    • The molecular structure of Agrobacterium VirE2-single stranded DNA complexes involved in nuclear import
    • Citovsky, V., Guralnick, B., Simon, M.N. and Wall, J.S. (1997) The molecular structure of Agrobacterium VirE2-single stranded DNA complexes involved in nuclear import. J. Mol. Biol. 271, 718-727.
    • (1997) J. Mol. Biol. , vol.271 , pp. 718-727
    • Citovsky, V.1    Guralnick, B.2    Simon, M.N.3    Wall, J.S.4
  • 6
    • 0025840490 scopus 로고
    • Gene transfer with subsequent removal of the selection gene from the host genome
    • Dale, E.C. and Ow, D.W. (1991) Gene transfer with subsequent removal of the selection gene from the host genome. Proc. Natl Acad. Sci. USA, 88, 10558-10562.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 10558-10562
    • Dale, E.C.1    Ow, D.W.2
  • 7
    • 0000286303 scopus 로고
    • Two T-DNA's co-transformed into Brassica napus by a double Agrobacterium tumefaciens infection are mainly integrated at the same locus
    • De Block, M. and Debrouwer, D. (1991) Two T-DNA's co-transformed into Brassica napus by a double Agrobacterium tumefaciens infection are mainly integrated at the same locus. Theor. Appl. Genet. 82, 257-263.
    • (1991) Theor. Appl. Genet. , vol.82 , pp. 257-263
    • De Block, M.1    Debrouwer, D.2
  • 8
    • 0032101769 scopus 로고    scopus 로고
    • Agrobacterium tumefaciens transformation and cotransformation frequencies of Arabidopsis thaliana root explants and tobacco protoplasts
    • De Buck, S., Jacobs, A., Van Montagu, M. and Depicker, A. (1998) Agrobacterium tumefaciens transformation and cotransformation frequencies of Arabidopsis thaliana root explants and tobacco protoplasts. Mol. Plant-Microbe Interact. 11, 449-457.
    • (1998) Mol. Plant-microbe Interact. , vol.11 , pp. 449-457
    • De Buck, S.1    Jacobs, A.2    Van Montagu, M.3    Depicker, A.4
  • 9
    • 0031754395 scopus 로고    scopus 로고
    • Agrobacterium tumefaciens-mediated transformation of filamentous fungi
    • Erratum, 16, 1074
    • de Groot, M.J.A., Bundock, P., Hooykaas, P.J.J. and Beijersbergen, A.G.M. (1998). Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nature Biotechnol. 16, 839-842 [Erratum, 16, 1074].
    • (1998) Nature Biotechnol. , vol.16 , pp. 839-842
    • De Groot, M.J.A.1    Bundock, P.2    Hooykaas, P.J.J.3    Beijersbergen, A.G.M.4
  • 10
    • 0001332501 scopus 로고
    • Different 5′ leader sequences modulate β-glucuronidase accumulation levels in transgenic Nicotiana tabacum plants
    • De Loose, M., Danthinne, X., Van Bockstaele, E., Van Montagu, M. and Depicker, A. (1995) Different 5′ leader sequences modulate β-glucuronidase accumulation levels in transgenic Nicotiana tabacum plants. Euphytica, 85, 209-216.
    • (1995) Euphytica , vol.85 , pp. 209-216
    • De Loose, M.1    Danthinne, X.2    Van Bockstaele, E.3    Van Montagu, M.4    Depicker, A.5
  • 11
    • 0031030679 scopus 로고    scopus 로고
    • T-DNA integration patterns in co-transformed plant cells suggest that T-DNA repeats originate from ligation of separate T-DNAs
    • De Neve, M., De Buck, S., Jacobs, A., Van Montagu, M. and Depicker, A. (1997) T-DNA integration patterns in co-transformed plant cells suggest that T-DNA repeats originate from ligation of separate T-DNAs. Plant J. 11, 15-29.
    • (1997) Plant J. , vol.11 , pp. 15-29
    • De Neve, M.1    De Buck, S.2    Jacobs, A.3    Van Montagu, M.4    Depicker, A.5
  • 14
    • 0024379001 scopus 로고
    • Covalently bound VirD2 protein of Agrobacterium tumefaciens protects the T-DNA from exonucleolytic degradation
    • Dürrenberger, F., Crameri, A., Hohn, B. and Koukolíková-Nicola, Z. (1989). Covalently bound VirD2 protein of Agrobacterium tumefaciens protects the T-DNA from exonucleolytic degradation. Proc. Natl Acad. Sci. USA, 86, 9154-9158.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 9154-9158
    • Dürrenberger, F.1    Crameri, A.2    Hohn, B.3    Koukolíková-Nicola, Z.4
  • 15
    • 85127630528 scopus 로고    scopus 로고
    • Agrobacterium-mediated plant transformation: A scientifically intriguing story with significant applications
    • (Lindsey, K., ed.). Amsterdam: Harwood Academic Publishers
    • Gheysen, G., Angenon, G. and Van Montagu, M. (1998) Agrobacterium-mediated plant transformation: a scientifically intriguing story with significant applications. In Transgenic Plant Research (Lindsey, K., ed.). Amsterdam: Harwood Academic Publishers, pp. 1-33.
    • (1998) Transgenic Plant Research , pp. 1-33
    • Gheysen, G.1    Angenon, G.2    Van Montagu, M.3
  • 16
    • 0026073574 scopus 로고
    • Illegitimate recombination in plants: A model for T-DNA integration
    • Gheysen, G., Villarroel, R. and Van Montagu, M. (1991) Illegitimate recombination in plants: a model for T-DNA integration. Genes Dev. 5, 287-297.
    • (1991) Genes Dev. , vol.5 , pp. 287-297
    • Gheysen, G.1    Villarroel, R.2    Van Montagu, M.3
  • 17
    • 0031898173 scopus 로고    scopus 로고
    • The introduction and expression of transgenes in plants
    • Gelvin, S.B. (1998) The introduction and expression of transgenes in plants. Curr. Opin. Biotechnol. 9, 227-232.
    • (1998) Curr. Opin. Biotechnol. , vol.9 , pp. 227-232
    • Gelvin, S.B.1
  • 18
    • 0030813154 scopus 로고    scopus 로고
    • Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions
    • Gorbunova, V. and Levy, A.A. (1997) Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions. Nucl. Acids Res. 25, 4650-4657.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 4650-4657
    • Gorbunova, V.1    Levy, A.A.2
  • 20
    • 0028020672 scopus 로고
    • Posttranscriptional silencing of reporter transgenes in tobacco correlates with DNA methylation
    • Ingelbrecht, I., Van Houdt, H., Van Montagu, M. and Depicker, A. (1994) Posttranscriptional silencing of reporter transgenes in tobacco correlates with DNA methylation. Proc. Natl Acad. Sci. USA, 91, 10502-10506.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 10502-10506
    • Ingelbrecht, I.1    Van Houdt, H.2    Van Montagu, M.3    Depicker, A.4
  • 21
    • 0025242872 scopus 로고
    • Localized transient expression of GUS in leaf discs following cocultivation with Agrobacterium
    • Janssen, B.-J. and Gardner, R.C. (1989) Localized transient expression of GUS in leaf discs following cocultivation with Agrobacterium. Plant Mol. Biol. 14, 61-72.
    • (1989) Plant Mol. Biol. , vol.14 , pp. 61-72
    • Janssen, B.-J.1    Gardner, R.C.2
  • 22
    • 0022480757 scopus 로고
    • The right border region of pTiT37 T-DNA is intrinsically more active than the left border region in promoting T-DNA transformation
    • Jen, G.C. and Chilton, M.-D. (1986) The right border region of pTiT37 T-DNA is intrinsically more active than the left border region in promoting T-DNA transformation. Proc. Natl Acad. Sci. USA, 83, 3895-3899.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 3895-3899
    • Jen, G.C.1    Chilton, M.-D.2
  • 23
    • 0023193729 scopus 로고
    • T-DNA is organized predominantly in inverted repeat structures in plants transformed with Agrobacterium tumefaciens C58 derivatives
    • Jorgensen, R., Snyder, C. and Jones, J.D.G. (1987) T-DNA is organized predominantly in inverted repeat structures in plants transformed with Agrobacterium tumefaciens C58 derivatives. Mol. Gen. Genet. 207, 471-477.
    • (1987) Mol. Gen. Genet. , vol.207 , pp. 471-477
    • Jorgensen, R.1    Snyder, C.2    Jones, J.D.G.3
  • 24
    • 0012338544 scopus 로고
    • Analysis of TR-DNA/plant junctions in the genome of a Convolvulus arvensis clone transformed by Agrobacterium rhizogenes strain A4
    • Jouanin, L., Bouchez, D., Drong, R.F., Tepfer, D. and Slightom, J.L. (1989) Analysis of TR-DNA/plant junctions in the genome of a Convolvulus arvensis clone transformed by Agrobacterium rhizogenes strain A4. Plant Mol. Biol. 12, 75-85.
    • (1989) Plant Mol. Biol. , vol.12 , pp. 75-85
    • Jouanin, L.1    Bouchez, D.2    Drong, R.F.3    Tepfer, D.4    Slightom, J.L.5
  • 25
    • 0000146626 scopus 로고    scopus 로고
    • An agrobacterium-mediated transient gene expression system for intact leaves
    • Kapila, J., De Rycke, R., Van Montagu, M. and Angenon, G. (1997) An Agrobacterium-mediated transient gene expression system for intact leaves. Plant Sci. 122, 101-108.
    • (1997) Plant Sci. , vol.122 , pp. 101-108
    • Kapila, J.1    De Rycke, R.2    Van Montagu, M.3    Angenon, G.4
  • 26
    • 0031149306 scopus 로고    scopus 로고
    • Integration of T-DNA binary vector 'backbone' sequences into the tobacco genome: Evidence for multiple complex patterns of integration
    • Kononov, M.E., Bassuner, B. and Gelvin, S.B. (1997) Integration of T-DNA binary vector 'backbone' sequences into the tobacco genome: evidence for multiple complex patterns of integration. Plant J. 11, 945-957.
    • (1997) Plant J. , vol.11 , pp. 945-957
    • Kononov, M.E.1    Bassuner, B.2    Gelvin, S.B.3
  • 27
    • 0032419337 scopus 로고    scopus 로고
    • Direct repeats of T-DNA integrated in tobacco chromosome: Characterization of junction regions
    • Krizkova, L. and Hrouda, M. (1998) Direct repeats of T-DNA integrated in tobacco chromosome: characterization of junction regions. Plant J. 16, 673-680.
    • (1998) Plant J. , vol.16 , pp. 673-680
    • Krizkova, L.1    Hrouda, M.2
  • 29
    • 0029655281 scopus 로고    scopus 로고
    • High-frequency illegitimate integration of transfected DNA at preintegrated target sites in a mammalian genome
    • Merrihew, R.V., Marburger, K., Pennington, S.L., Roth, D.B. and Wilson, J.H. (1996) High-frequency illegitimate integration of transfected DNA at preintegrated target sites in a mammalian genome. Mol. Cell. Biol. 16, 10-18.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 10-18
    • Merrihew, R.V.1    Marburger, K.2    Pennington, S.L.3    Roth, D.B.4    Wilson, J.H.5
  • 31
    • 0021919918 scopus 로고
    • Identification of DNA sequences required for activity of the cauliflower mosaic virus 35s promoter
    • Odell, J.T., Nagy, F. and Chua, N.-H. (1985) Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature, 313, 810-812.
    • (1985) Nature , vol.313 , pp. 810-812
    • Odell, J.T.1    Nagy, F.2    Chua, N.-H.3
  • 32
    • 0025183234 scopus 로고
    • Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium mediated transformation
    • Offringa, R., de Groot, M.J.A., Haagsman, H.J., Does, M.P., van den Elzen, P. and Hooykaas, P.J.J. (1990) Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium mediated transformation. EMBO J. 9, 3077-3084.
    • (1990) EMBO J. , vol.9 , pp. 3077-3084
    • Offringa, R.1    De Groot, M.J.A.2    Haagsman, H.J.3    Does, M.P.4    Van Den Elzen, P.5    Hooykaas, P.J.J.6
  • 33
    • 0027146636 scopus 로고
    • Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: Analogy to bacterial conjugation
    • Pansegrau, W., Schoumacher, F., Hohn, B. and Lanka, E. (1993) Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: analogy to bacterial conjugation. Proc. Natl Acad. Sci. USA, 90, 11538-11542.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 11538-11542
    • Pansegrau, W.1    Schoumacher, F.2    Hohn, B.3    Lanka, E.4
  • 34
    • 0032482935 scopus 로고    scopus 로고
    • Interaction of the DNA modifying proteins VirD1 and VirD2 of Agrobacterium tumefaciens: Analysis of subcellular localization in mammalian cells
    • Relić, B., Andjelković, M., Rossi, L., Nagamine, Y. and Hohn, B. (1998) Interaction of the DNA modifying proteins VirD1 and VirD2 of Agrobacterium tumefaciens: analysis of subcellular localization in mammalian cells. Proc. Natl Acad. Sci. USA, 95, 9105-9110.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 9105-9110
    • Relić, B.1    Andjelković, M.2    Rossi, L.3    Nagamine, Y.4    Hohn, B.5
  • 35
    • 0032531757 scopus 로고    scopus 로고
    • Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells
    • Salomon, S. and Puchta, H. (1998) Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells. EMBO J. 17, 6086-6095.
    • (1998) EMBO J. , vol.17 , pp. 6086-6095
    • Salomon, S.1    Puchta, H.2
  • 36
    • 0023056192 scopus 로고
    • Agrobacterium tumefaciens and the susceptible plant cell: A novel adaptation of extracellular recognition and DNA conjugation
    • Stachel, S.E. and Zambryski, P. (1986) Agrobacterium tumefaciens and the susceptible plant cell: a novel adaptation of extracellular recognition and DNA conjugation. Cell, 47, 155-157.
    • (1986) Cell , vol.47 , pp. 155-157
    • Stachel, S.E.1    Zambryski, P.2
  • 37
    • 0030157430 scopus 로고    scopus 로고
    • The integration of T-DNA into plant genomes
    • Tinland, B. (1996) The integration of T-DNA into plant genomes. Trends Plant Sci. 1, 178-184.
    • (1996) Trends Plant Sci. , vol.1 , pp. 178-184
    • Tinland, B.1
  • 38
    • 0029009111 scopus 로고
    • The agrobacterium tumefaciens virulence D2 protein is responsible for precise integration of T-DNA into the plant genome
    • Tinland, B., Schoumacher, F., Gloeckler, V., Bravo-Angel, A.M. and Hohn, B. (1995) The Agrobacterium tumefaciens virulence D2 protein is responsible for precise integration of T-DNA into the plant genome. EMBO J. 14, 3585-3595.
    • (1995) EMBO J. , vol.14 , pp. 3585-3595
    • Tinland, B.1    Schoumacher, F.2    Gloeckler, V.3    Bravo-Angel, A.M.4    Hohn, B.5
  • 39
    • 0028786607 scopus 로고
    • Mutational analysis of a conserved motif of Agrobacterium tumefaciens VirD2
    • Vogel, A.M., Yoon, J. and Das, A. (1995) Mutational analysis of a conserved motif of Agrobacterium tumefaciens VirD2. Nucl. Acids Res. 23, 4087-4091.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 4087-4091
    • Vogel, A.M.1    Yoon, J.2    Das, A.3
  • 40
    • 0023044312 scopus 로고
    • The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease
    • Yanofsky, M.F., Porter, S.G., Young, C., Albright, L.M., Gordon, M.P. and Nester, E.W. (1986) The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease. Cell, 47, 471-477.
    • (1986) Cell , vol.47 , pp. 471-477
    • Yanofsky, M.F.1    Porter, S.G.2    Young, C.3    Albright, L.M.4    Gordon, M.P.5    Nester, E.W.6
  • 41
    • 0000398313 scopus 로고
    • Chronicles from the Agrobacterium-plant cell DNA transfer story
    • Zambryski, P.C. (1992) Chronicles from the Agrobacterium-plant cell DNA transfer story. Ann. Rev. Plant Physiol. Plant Mol. Biol. 43, 465-490.
    • (1992) Ann. Rev. Plant Physiol. Plant Mol. Biol. , vol.43 , pp. 465-490
    • Zambryski, P.C.1
  • 42
    • 0020015602 scopus 로고
    • Tumor induction of Agrobacterium tumefaciens: Analysis of the boundaries of T-DNA
    • Zambryski, P., Depicker, A., Kruger, K. and Goodman, H. (1982) Tumor induction of Agrobacterium tumefaciens: analysis of the boundaries of T-DNA. J. Mol. Appl. Genet. 1, 361-370.
    • (1982) J. Mol. Appl. Genet. , vol.1 , pp. 361-370
    • Zambryski, P.1    Depicker, A.2    Kruger, K.3    Goodman, H.4
  • 43
    • 0000428257 scopus 로고    scopus 로고
    • The Agrobacterium DNA transfer complex
    • Zupan, J. and Zambryski, P. (1997) The Agrobacterium DNA transfer complex. Crit. Rev. Plant Sci. 16, 279-295.
    • (1997) Crit. Rev. Plant Sci. , vol.16 , pp. 279-295
    • Zupan, J.1    Zambryski, P.2


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