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Volumn 232, Issue , 2003, Pages 217-262

Organization, Developmental Dynamics, and Evolution of Plastid Nucleoids

Author keywords

Chloroplast evolution; DNA polymerase; DNA binding protein; Plastid genomic machinery; Plastid nucleoid; RNA polymerase; Sulfite reductase

Indexed keywords

4',6 DIAMIDINO 2 PHENYLINDOLE; DEOXYRIBONUCLEASE I; DNA; DNA BINDING PROTEIN; DNA DIRECTED DNA POLYMERASE BETA; DNA POLYMERASE; GREEN FLUORESCENT PROTEIN; PLASTID DNA; REGULATOR PROTEIN; RNA; RNA POLYMERASE; SULFITE REDUCTASE; UNCLASSIFIED DRUG;

EID: 0346887203     PISSN: 00747696     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0074-7696(03)32006-6     Document Type: Article
Times cited : (69)

References (197)
  • 1
    • 36348955545 scopus 로고    scopus 로고
    • A prediction of the size and evolutionary origin of the proteome of chloroplasts of Arabidopsis
    • Abdallah, F., Salamini, F., and Leister, D. (2000). A prediction of the size and evolutionary origin of the proteome of chloroplasts of Arabidopsis. Trends Plant Sci. 5, 141-142.
    • (2000) Trends Plant Sci. , vol.5 , pp. 141-142
    • Abdallah, F.1    Salamini, F.2    Leister, D.3
  • 2
    • 0000468111 scopus 로고
    • Ferredoxin-sulfite reductase drom spinach
    • Aketagawa, J., and Tamura, G. (1980). Ferredoxin-sulfite reductase drom spinach. Agric. Biol. Chem. 44, 2371-2378.
    • (1980) Agric. Biol. Chem. , vol.44 , pp. 2371-2378
    • Aketagawa, J.1    Tamura, G.2
  • 3
    • 0034202992 scopus 로고    scopus 로고
    • The role of sigma factors in plastid transcription
    • Allison, L. A. (2000). The role of sigma factors in plastid transcription. Biochimie 82, 537-548.
    • (2000) Biochimie , vol.82 , pp. 537-548
    • Allison, L.A.1
  • 4
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 5
    • 0032731196 scopus 로고    scopus 로고
    • Twelve species of the nucleoid-associated protein from Escherichia coli: Sequence recognition specificity and DNA binding affinity
    • Azam, T. A., and Ishihama, A. (1999). Twelve species of the nucleoid-associated protein from Escherichia coli: Sequence recognition specificity and DNA binding affinity. J. Biol. Chem. 274, 33105-33113.
    • (1999) J. Biol. Chem. , vol.274 , pp. 33105-33113
    • Azam, T.A.1    Ishihama, A.2
  • 6
    • 0033869982 scopus 로고    scopus 로고
    • Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid
    • Azam, T. A., Hiraga, S., and Ishihama, A. (2000). Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid. Genes Cells 5, 613, 626.
    • (2000) Genes Cells , vol.5 , pp. 613
    • Azam, T.A.1    Hiraga, S.2    Ishihama, A.3
  • 7
    • 0035112410 scopus 로고    scopus 로고
    • Involvement of a nuclear-encoded basic helix-loop-helix protein in transcription of the light-responsive promoter of psbD
    • Baba, K., Nakano, T., Yamagishi, K., and Yoshida, S. (2001). Involvement of a nuclear-encoded basic helix-loop-helix protein in transcription of the light-responsive promoter of psbD. Plant Physiol. 125, 595-603.
    • (2001) Plant Physiol. , vol.125 , pp. 595-603
    • Baba, K.1    Nakano, T.2    Yamagishi, K.3    Yoshida, S.4
  • 8
    • 0035197586 scopus 로고    scopus 로고
    • Chloroplast transcription at different light intensities: Glutathione-mediated phosphorylation of the major RNA polymerase involved in redox-regulated organellar gene expression
    • Baena-González, E., Baginsky, S., Mulo, P., Summer, H., Aro, E.-M., and Link, G. (2001). Chloroplast transcription at different light intensities: Glutathione-mediated phosphorylation of the major RNA polymerase involved in redox-regulated organellar gene expression. Plant Physiol. 127, 1044-1052.
    • (2001) Plant Physiol. , vol.127 , pp. 1044-1052
    • Baena-González, E.1    Baginsky, S.2    Mulo, P.3    Summer, H.4    Aro, E.-M.5    Link, G.6
  • 9
    • 0033103027 scopus 로고    scopus 로고
    • PTK, the chloroplast RNA polymerase-associated protein kinase from mustard (Sinapis alba), mediates redox control of plastid in vitro transcription
    • Baginsky, S., Tiller, K., Pfannschmidt, T., and Link, G. (1999). PTK, the chloroplast RNA polymerase-associated protein kinase from mustard (Sinapis alba), mediates redox control of plastid in vitro transcription. Plant Mol. Biol. 39, 1013-1023.
    • (1999) Plant Mol. Biol. , vol.39 , pp. 1013-1023
    • Baginsky, S.1    Tiller, K.2    Pfannschmidt, T.3    Link, G.4
  • 10
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S. L., Roger, A. J., Wenk-Siefert, I., and Doolittle, W. F. (2000). A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290, 972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 12
    • 0036320063 scopus 로고    scopus 로고
    • A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts
    • Beardslee, T. A., Roy-Chowdhury, S., Jaiswal, P., Buhot, L., Lerbs-Mache, S., Stern, D. B., and Allison, L. A. (2002). A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts. Plant J. 31, 199-209.
    • (2002) Plant J. , vol.31 , pp. 199-209
    • Beardslee, T.A.1    Roy-Chowdhury, S.2    Jaiswal, P.3    Buhot, L.4    Lerbs-Mache, S.5    Stern, D.B.6    Allison, L.A.7
  • 15
    • 0026019440 scopus 로고
    • HU and IHF, two homologous histone-like proteins of Escherichia coli, form different protein-DNA complexes with short DNA fragments
    • Bonnefoy, E., and Rouvière-Yaniv, J. (1991). HU and IHF, two homologous histone-like proteins of Escherichia coli, form different protein-DNA complexes with short DNA fragments. EMBO J. 10, 687-696.
    • (1991) EMBO J. , vol.10 , pp. 687-696
    • Bonnefoy, E.1    Rouvière-Yaniv, J.2
  • 16
    • 0002632552 scopus 로고
    • Similarity between the bacterial histone-like protein HU and a protein from spinach chloroplasts
    • Briat, J.-F., Letoffe, S., Mache, R., and Rouviere-Yaniv, J. (1984). Similarity between the bacterial histone-like protein HU and a protein from spinach chloroplasts. FEBS Lett. 172, 75-79.
    • (1984) FEBS Lett. , vol.172 , pp. 75-79
    • Briat, J.-F.1    Letoffe, S.2    Mache, R.3    Rouviere-Yaniv, J.4
  • 18
    • 0037333742 scopus 로고    scopus 로고
    • Expanding the physiological role of the hexameric DnaB helicase
    • Bujalowski, W. (2003). Expanding the physiological role of the hexameric DnaB helicase. Trends Biochem. Sci. 28, 116-118.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 116-118
    • Bujalowski, W.1
  • 19
    • 0033103257 scopus 로고    scopus 로고
    • The 68 kDa DNA compacting nucleoid protein from soybean chloroplasts inhibits DNA synthesis in vitro
    • Cannon, G. C., Ward, L. N., Case, C. I., and Heinhorst, S. (1999). The 68 kDa DNA compacting nucleoid protein from soybean chloroplasts inhibits DNA synthesis in vitro. Plant Mol. Biol. 39, 835-845.
    • (1999) Plant Mol. Biol. , vol.39 , pp. 835-845
    • Cannon, G.C.1    Ward, L.N.2    Case, C.I.3    Heinhorst, S.4
  • 20
    • 0029866234 scopus 로고    scopus 로고
    • Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage
    • Cermakian, N., Ikeda, M., Cedergren, R., and Gray, M. W. (1996). Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage. Nucleic Acids Res. 24, 648-654.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 648-654
    • Cermakian, N.1    Ikeda, M.2    Cedergren, R.3    Gray, M.W.4
  • 23
    • 0018428391 scopus 로고
    • Use of the fluorochrome 4′,6-diamidino-2-phenylindole in genetic and developmental studies of chloroplast DNA
    • Coleman, A. W. (1979). Use of the fluorochrome 4′ ,6-diamidino-2-phenylindole in genetic and developmental studies of chloroplast DNA. J. Cell Biol. 82, 299-305.
    • (1979) J. Cell Biol. , vol.82 , pp. 299-305
    • Coleman, A.W.1
  • 24
    • 0024581722 scopus 로고
    • Isolation and characterization of DNA-binding proteins from the cyanobacterium Synechococcus sp. PCC 7002 (Agmenellum quadruplicatum) and from spinach chloroplasts
    • Crevel, G., Laine, B., Sautiere, P., and Galleron, C. (1989). Isolation and characterization of DNA-binding proteins from the cyanobacterium Synechococcus sp. PCC 7002 (Agmenellum quadruplicatum) and from spinach chloroplasts. Biochim. Biophys. Acta 1007, 36-43.
    • (1989) Biochim. Biophys. Acta , vol.1007 , pp. 36-43
    • Crevel, G.1    Laine, B.2    Sautiere, P.3    Galleron, C.4
  • 25
    • 0037048702 scopus 로고    scopus 로고
    • HU: Promoting or counteracting DNA compaction?
    • Dame, R. T., and Goosen, N. (2002). HU: promoting or counteracting DNA compaction? FEBS Lett. 529, 151-156.
    • (2002) FEBS Lett. , vol.529 , pp. 151-156
    • Dame, R.T.1    Goosen, N.2
  • 26
    • 0036225307 scopus 로고    scopus 로고
    • Comparative analysis of chloroplast genomes: Functional annotation, genome-based phylogeny, and deduced evolutionary patterns
    • De Las Rivas, J., Lozano, J. J., and Ortiz, A. R. (2002). Comparative analysis of chloroplast genomes: Functional annotation, genome-based phylogeny, and deduced evolutionary patterns. Genome Res. 12, 567-583.
    • (2002) Genome Res. , vol.12 , pp. 567-583
    • De Las Rivas, J.1    Lozano, J.J.2    Ortiz, A.R.3
  • 27
  • 28
    • 0026423881 scopus 로고
    • Cryptomonad algae are evolutionary chimeras of two phylogenetically distinct unicellular eukaryotes
    • Douglas, S. E., Murphy, C. A., Spencer, D. F., and Gray, M. W. (1991). Cryptomonad algae are evolutionary chimeras of two phylogenetically distinct unicellular eukaryotes. Nature 350, 148-151.
    • (1991) Nature , vol.350 , pp. 148-151
    • Douglas, S.E.1    Murphy, C.A.2    Spencer, D.F.3    Gray, M.W.4
  • 29
    • 0033199033 scopus 로고    scopus 로고
    • 5′ to 3′ exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways
    • Drager, R. G., Higgs, D., Kindle, K. L., and Stern, D. B. (1999). 5′ to 3′ exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways. Plant J. 19, 521-531.
    • (1999) Plant J. , vol.19 , pp. 521-531
    • Drager, R.G.1    Higgs, D.2    Kindle, K.L.3    Stern, D.B.4
  • 30
    • 0036741190 scopus 로고    scopus 로고
    • A dominant nuclear mutation in Chlamydomonas identifies a factor controlling chloroplast mRNA stability by acting on the coding region of the atpA transcript
    • Drapier, D., Girard-Bascou, J., Stern, D. B., and Wollman, F.-A. (2002). A dominant nuclear mutation in Chlamydomonas identifies a factor controlling chloroplast mRNA stability by acting on the coding region of the atpA transcript. Plant J. 31, 687-697.
    • (2002) Plant J. , vol.31 , pp. 687-697
    • Drapier, D.1    Girard-Bascou, J.2    Stern, D.B.3    Wollman, F.-A.4
  • 31
    • 0034697980 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
    • Emanuelsson, O., Nielsen, H., Brunak, S., and von Heijne, G. (2000). Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol. 300, 1005-1016.
    • (2000) J. Mol. Biol. , vol.300 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    Von Heijne, G.4
  • 32
    • 0037119995 scopus 로고    scopus 로고
    • The structure of bacterial DnaA: Implications for general mechanisms underlying DNA replication initiation
    • Erzberger, J. P., Pirruccello, M. M., and Berger, J. M. (2002). The structure of bacterial DnaA: Implications for general mechanisms underlying DNA replication initiation. EMBO J. 21, 4763-4773.
    • (2002) EMBO J. , vol.21 , pp. 4763-4773
    • Erzberger, J.P.1    Pirruccello, M.M.2    Berger, J.M.3
  • 36
    • 0036107982 scopus 로고    scopus 로고
    • Evolution of DNA polymerase families: Evidence for multiple gene exchange between cellular and viral proteins
    • Fliée, J., Forterre, P., Sen-Lin, T., and Laurent, J. (2002). Evolution of DNA polymerase families: Evidence for multiple gene exchange between cellular and viral proteins. J. Mol. Evol. 54, 763-773.
    • (2002) J. Mol. Evol. , vol.54 , pp. 763-773
    • Fliée, J.1    Forterre, P.2    Sen-Lin, T.3    Laurent, J.4
  • 38
    • 0034623377 scopus 로고    scopus 로고
    • Three new nuclear genes, sigD, sigE, sigF, encoding putative plastid RNA polymerase sigma factors in Arabidopsis thaliana
    • Fujiwara, M., Nagashima, A., Kanamaru, K., Tanaka, K., and Takahashi, H. (2000). Three new nuclear genes, sigD, sigE, sigF, encoding putative plastid RNA polymerase sigma factors in Arabidopsis thaliana. FEBS Lett. 481, 47-52.
    • (2000) FEBS Lett. , vol.481 , pp. 47-52
    • Fujiwara, M.1    Nagashima, A.2    Kanamaru, K.3    Tanaka, K.4    Takahashi, H.5
  • 39
    • 0036207515 scopus 로고    scopus 로고
    • A 70-kDa chloroplast DNA polymerase from pea (Pisum sativum) that shows high processivity and displays moderate fidelity
    • Gaikwad, A., Hop, D. V., and Mukherjee, S. K. (2002). A 70-kDa chloroplast DNA polymerase from pea (Pisum sativum) that shows high processivity and displays moderate fidelity. Mol. Genet. Genom. 267, 45-56.
    • (2002) Mol. Genet. Genom. , vol.267 , pp. 45-56
    • Gaikwad, A.1    Hop, D.V.2    Mukherjee, S.K.3
  • 41
    • 0030781424 scopus 로고    scopus 로고
    • Coordination of nuclear and chloroplast gene expression in plant cells
    • Goldschmidt-Clermont, M. (1998). Coordination of nuclear and chloroplast gene expression in plant cells. Int. Rev. Cytol. 177, 115-180.
    • (1998) Int. Rev. Cytol. , vol.177 , pp. 115-180
    • Goldschmidt-Clermont, M.1
  • 42
    • 0037053366 scopus 로고    scopus 로고
    • A Trypanpsome mitochondrial RNA polymerase is required for transcription and replication
    • Grams, J., Morris, J. C., Drew, M. E., Wang, Z., Englund, P. T., and Hajduk, S. L. (2002). A Trypanpsome mitochondrial RNA polymerase is required for transcription and replication. J. Biol. Chem. 277, 16952-16959.
    • (2002) J. Biol. Chem. , vol.277 , pp. 16952-16959
    • Grams, J.1    Morris, J.C.2    Drew, M.E.3    Wang, Z.4    Englund, P.T.5    Hajduk, S.L.6
  • 43
    • 0030843047 scopus 로고    scopus 로고
    • The recombinant product of the Cryptomonas Φ plastid gene hlpA is an architectural HU-like protein that promotes the assembly of complex nucleoprotein structures
    • Grasser, K. D., Ritt, C., Krieg, M., Fernández, S., Alonso, J. C., and Grimm, R. (1997). The recombinant product of the Cryptomonas Φ plastid gene hlpA is an architectural HU-like protein that promotes the assembly of complex nucleoprotein structures. Eur. J. Biochem. 249, 70-76.
    • (1997) Eur. J. Biochem. , vol.249 , pp. 70-76
    • Grasser, K.D.1    Ritt, C.2    Krieg, M.3    Fernández, S.4    Alonso, J.C.5    Grimm, R.6
  • 44
    • 0027073347 scopus 로고
    • The endosymbiont hypothesis revisited
    • Gray, M. W. (1992). The endosymbiont hypothesis revisited. Int. Rev. Cytol. 141, 233-357.
    • (1992) Int. Rev. Cytol. , vol.141 , pp. 233-357
    • Gray, M.W.1
  • 45
    • 0033030130 scopus 로고    scopus 로고
    • Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): Implications regarding the origin of photosynthesis
    • Gupta, R. S., Mukhtar, T., and Singh, B. (1999). Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): Implications regarding the origin of photosynthesis. Mol. Microbiol. 32, 893-906.
    • (1999) Mol. Microbiol. , vol.32 , pp. 893-906
    • Gupta, R.S.1    Mukhtar, T.2    Singh, B.3
  • 46
    • 0031011722 scopus 로고    scopus 로고
    • The two RNA polymerases encoded by the nuclear and plastid compartments transcribe distinct groups of genes in tobacco plastids
    • Hajdukiewicz, P. T. J., Allison, L. A., and Maliga, P. (1997). The two RNA polymerases encoded by the nuclear and plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J. 16, 4041-4048.
    • (1997) EMBO J. , vol.16 , pp. 4041-4048
    • Hajdukiewicz, P.T.J.1    Allison, L.A.2    Maliga, P.3
  • 47
    • 0001674122 scopus 로고
    • Structure, composition, and distribution of plastid nucleoids in Narcissus pseudonarcissus
    • Hansmann, P., Falk, H., Ronai, K., and Sitte, P. (1985). Structure, composition, and distribution of plastid nucleoids in Narcissus pseudonarcissus. Planta 164, 459-472.
    • (1985) Planta , vol.164 , pp. 459-472
    • Hansmann, P.1    Falk, H.2    Ronai, K.3    Sitte, P.4
  • 49
    • 0035875777 scopus 로고    scopus 로고
    • Characterization of two genes, Sigl and Sig2, encoding distinct plastid σ factors in the moss Physcomitrella patens: Phylogenetic relationships to plastid σ factors in higher plants
    • Hara, K., Morita, M., Takahashi, R., Sugita, M., Kato, S., and Aoki, S. (2001a). Characterization of two genes, Sigl and Sig2, encoding distinct plastid σ factors in the moss Physcomitrella patens: Phylogenetic relationships to plastid σ factors in higher plants. FEBS Lett. 499, 87-91.
    • (2001) FEBS Lett. , vol.499 , pp. 87-91
    • Hara, K.1    Morita, M.2    Takahashi, R.3    Sugita, M.4    Kato, S.5    Aoki, S.6
  • 50
    • 0035951637 scopus 로고    scopus 로고
    • Cloning and characterization of the cDNA for a plastid σ factor from the moss Physcomitrella patens
    • Hara, K., Sugita, M., and Aoki, S. (2001b). Cloning and characterization of the cDNA for a plastid σ factor from the moss Physcomitrella patens. Biochim. Biophys. Acta 1517, 302-306.
    • (2001) Biochim. Biophys. Acta , vol.1517 , pp. 302-306
    • Hara, K.1    Sugita, M.2    Aoki, S.3
  • 51
    • 1842411934 scopus 로고    scopus 로고
    • Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis
    • Hedtke, B., Börner, T., and Weihe, A. (1997). Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. Science 277, 809-811.
    • (1997) Science , vol.277 , pp. 809-811
    • Hedtke, B.1    Börner, T.2    Weihe, A.3
  • 52
    • 0034330546 scopus 로고    scopus 로고
    • One RNA polymerase serving two genomes
    • Hedtke, B., Börner, T., and Weihe, A. (2000). One RNA polymerase serving two genomes. EMBO Rep. 1, 435-440.
    • (2000) EMBO Rep. , vol.1 , pp. 435-440
    • Hedtke, B.1    Börner, T.2    Weihe, A.3
  • 53
    • 0036017866 scopus 로고    scopus 로고
    • Six active phage-type RNA polymerase genes in Nicotiana tabacum
    • Hedtke, B., Legen, J., Weihe, A., Herrman, R. G., and Börner, T. (2002). Six active phage-type RNA polymerase genes in Nicotiana tabacum. Plant J. 30, 625-637.
    • (2002) Plant J. , vol.30 , pp. 625-637
    • Hedtke, B.1    Legen, J.2    Weihe, A.3    Herrman, R.G.4    Börner, T.5
  • 54
    • 0027529403 scopus 로고
    • DNA replication in chloroplasts
    • Heinhorst, S., and Cannon, G. C. (1993). DNA replication in chloroplasts. J. Cell Sci. 104, 1-9.
    • (1993) J. Cell Sci. , vol.104 , pp. 1-9
    • Heinhorst, S.1    Cannon, G.C.2
  • 55
    • 0032903448 scopus 로고    scopus 로고
    • Organellar RNA polymerases of higher plants
    • Hess, W. R., and Börner, T. (1999). Organellar RNA polymerases of higher plants. Int. Rev. Cytol. 190, 1-59.
    • (1999) Int. Rev. Cytol. , vol.190 , pp. 1-59
    • Hess, W.R.1    Börner, T.2
  • 58
    • 25544434423 scopus 로고    scopus 로고
    • Analysis of sulfite reductase in the plastid nucleoid during greening
    • Hirama, T., Sekine, K., and Sato, N. (2003). Analysis of sulfite reductase in the plastid nucleoid during greening. Plant Cell Physiol. 44, s58.
    • (2003) Plant Cell Physiol. , vol.44
    • Hirama, T.1    Sekine, K.2    Sato, N.3
  • 59
    • 0035282916 scopus 로고    scopus 로고
    • Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: Development of a chloroplast in vitro RNA editing system
    • Hirose, T., and Sugiura, M. (2001). Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: Development of a chloroplast in vitro RNA editing system. EMBO J. 20, 1144-1152.
    • (2001) EMBO J. , vol.20 , pp. 1144-1152
    • Hirose, T.1    Sugiura, M.2
  • 60
    • 0027932780 scopus 로고
    • Characterization of a cDNA encoding a novel type of RNA-binding protein in tobacco: Its expression and nucleic acid-binding properties
    • Hirose, T., Sugita, M., and Sugiura, M. (1994). Characterization of a cDNA encoding a novel type of RNA-binding protein in tobacco: Its expression and nucleic acid-binding properties. Mol. Gen. Genet. 244, 360-366.
    • (1994) Mol. Gen. Genet. , vol.244 , pp. 360-366
    • Hirose, T.1    Sugita, M.2    Sugiura, M.3
  • 61
    • 0032999983 scopus 로고    scopus 로고
    • Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains
    • Honda, D., Yokota, A., and Sugiyama, J. (1999). Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains. J. Mol. Evol. 48, 723-739.
    • (1999) J. Mol. Evol. , vol.48 , pp. 723-739
    • Honda, D.1    Yokota, A.2    Sugiyama, J.3
  • 62
    • 0025189863 scopus 로고
    • Maize chloroplast RNA polymerase: The 180-, 120-, and 38-kilodalton polypeptides are encoded in chloroplast genes
    • Hu, J., and Bogorad, L. (1990). Maize chloroplast RNA polymerase: The 180-, 120-, and 38-kilodalton polypeptides are encoded in chloroplast genes. Proc. Natl. Acad. Sci. USA 87, 1531-1535.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 1531-1535
    • Hu, J.1    Bogorad, L.2
  • 63
    • 0025834037 scopus 로고
    • Maize chloroplast RNA polymerase: The 78-kilodalton polypeptide is encoded by the plastid rpoC1 gene
    • Hu, J., Troxler, R. F., and Bogorad, L. (1991). Maize chloroplast RNA polymerase: The 78-kilodalton polypeptide is encoded by the plastid rpoC1 gene. Nucleic Acids Res. 19, 3431-3434.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3431-3434
    • Hu, J.1    Troxler, R.F.2    Bogorad, L.3
  • 64
    • 0033572636 scopus 로고    scopus 로고
    • Polyamine transport in bacteria and yeast
    • Igarashi, K., and Kashiwagi, K. (1999). Polyamine transport in bacteria and yeast. Biochem. J. 344, 633-642.
    • (1999) Biochem. J. , vol.344 , pp. 633-642
    • Igarashi, K.1    Kashiwagi, K.2
  • 65
    • 0030999576 scopus 로고    scopus 로고
    • Organ-specific transcription of the rrn operon in spinach plastids
    • Iratni, R., Diederich, L., Harrak, H., Bligny, M., and Lerbs-Mache, S. (1997). Organ-specific transcription of the rrn operon in spinach plastids. J. Biol. Chem. 272, 13676-13682.
    • (1997) J. Biol. Chem. , vol.272 , pp. 13676-13682
    • Iratni, R.1    Diederich, L.2    Harrak, H.3    Bligny, M.4    Lerbs-Mache, S.5
  • 67
    • 0036010186 scopus 로고    scopus 로고
    • Identification and characterization of two phage-type RNA polymerase cDNAs in the moss physcomitrella patens: Implication of recent evolution of nuclear-encoded RNA polymerase of plastids in plants
    • Kabeya, Y., Hashimoto, K., and Sato, N. (2002). Identification and characterization of two phage-type RNA polymerase cDNAs in the moss physcomitrella patens: Implication of recent evolution of nuclear-encoded RNA polymerase of plastids in plants. Plant Cell Physiol. 43, 245-255.
    • (2002) Plant Cell Physiol. , vol.43 , pp. 245-255
    • Kabeya, Y.1    Hashimoto, K.2    Sato, N.3
  • 68
    • 24644486210 scopus 로고    scopus 로고
    • Evolution of organellar transcription machinery in bryophytes and vascular plants
    • (A. J. Wood, Ed.), Kluwer Academic, Dordrecht
    • Kabeya, Y., Sekine, K., and Sato, N. (2003). Evolution of organellar transcription machinery in bryophytes and vascular plants. In "New Frontiers in Bryology" (A. J. Wood, Ed.), Kluwer Academic, Dordrecht.
    • (2003) New Frontiers in Bryology
    • Kabeya, Y.1    Sekine, K.2    Sato, N.3
  • 72
    • 0031079586 scopus 로고    scopus 로고
    • Identification and functional significance of a new class of non-consensus-type plastid promoters
    • Kapoor, S., Suzuki, J. Y., and Sugiura, M. (1997). Identification and functional significance of a new class of non-consensus-type plastid promoters. Plant J. 11, 327-337.
    • (1997) Plant J. , vol.11 , pp. 327-337
    • Kapoor, S.1    Suzuki, J.Y.2    Sugiura, M.3
  • 73
    • 0037008697 scopus 로고    scopus 로고
    • Mutation in the yeast mitochondrial RNA polymerase specificity factor, Mtf1, verify an essential role in promoter utilization
    • Karlok, M. A., Jang, S.-H., and Jaehning, J. A. (2002). Mutation in the yeast mitochondrial RNA polymerase specificity factor, Mtf1, verify an essential role in promoter utilization. J. Biol. Chem. 277, 28143-28149.
    • (2002) J. Biol. Chem. , vol.277 , pp. 28143-28149
    • Karlok, M.A.1    Jang, S.-H.2    Jaehning, J.A.3
  • 75
    • 0032103982 scopus 로고    scopus 로고
    • Sequence and expression characteristics of a nuclear-encoded chloroplast sigma factor from mustard (Sinapis alba)
    • Kestermann, M., Neukirchen, S., Kloppstech, K., and Link, G. (1998). Sequence and expression characteristics of a nuclear-encoded chloroplast sigma factor from mustard (Sinapis alba). Nucleic Acids Res. 26, 2747-2753.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2747-2753
    • Kestermann, M.1    Neukirchen, S.2    Kloppstech, K.3    Link, G.4
  • 76
    • 0029360395 scopus 로고
    • Identification of a sequence-specific DNA binding factor required for transcription of the barley chloroplast blue light-responsive psbD-psbC promoter
    • Kim, M., and Mullet, J. E. (1995). Identification of a sequence-specific DNA binding factor required for transcription of the barley chloroplast blue light-responsive psbD-psbC promoter. Plant Cell 7, 1445-1457.
    • (1995) Plant Cell , vol.7 , pp. 1445-1457
    • Kim, M.1    Mullet, J.E.2
  • 78
  • 79
    • 0035930946 scopus 로고    scopus 로고
    • Dual targeting phage-type RNA polymerase to both mitochondria and plastids is due to alternative translation initiation in single transcripts
    • Kobayashi, Y., Dokiya, Y., and Sugita, M. (2001a). Dual targeting phage-type RNA polymerase to both mitochondria and plastids is due to alternative translation initiation in single transcripts. Biochem. Biophys. Res. Commun. 289, 1106-1113.
    • (2001) Biochem. Biophys. Res. Commun. , vol.289 , pp. 1106-1113
    • Kobayashi, Y.1    Dokiya, Y.2    Sugita, M.3
  • 80
    • 0035861182 scopus 로고    scopus 로고
    • Genomic organization and organ-specific expression of a nuclear gene encoding phage-type RNA polymerase in Nicotiana sylvestris
    • Kobayashi, Y., Dokiya, Y., Sugiura, M., Niwa, Y., and Sugita, M. (2001b). Genomic organization and organ-specific expression of a nuclear gene encoding phage-type RNA polymerase in Nicotiana sylvestris. Gene 279, 33-40.
    • (2001) Gene , vol.279 , pp. 33-40
    • Kobayashi, Y.1    Dokiya, Y.2    Sugiura, M.3    Niwa, Y.4    Sugita, M.5
  • 81
    • 0016753583 scopus 로고
    • Chloroplast DNA from higher plants replicates by both the Cairns and the rolling circle mechanism
    • Kolodner, R. D., and Tewari, K. K. (1975). Chloroplast DNA from higher plants replicates by both the Cairns and the rolling circle mechanism. Nature 256, 708-711.
    • (1975) Nature , vol.256 , pp. 708-711
    • Kolodner, R.D.1    Tewari, K.K.2
  • 82
    • 0037133701 scopus 로고    scopus 로고
    • Evidence for in vivo modulation of chloroplast RNA stability by 3′-UTR homopolymeric tails in Chlamydomonas reinhardtii
    • Komine, Y., Kikis, E., Schuster, G., and Stern, D. (2002). Evidence for in vivo modulation of chloroplast RNA stability by 3′-UTR homopolymeric tails in Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. USA 99, 4085-4090.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 4085-4090
    • Komine, Y.1    Kikis, E.2    Schuster, G.3    Stern, D.4
  • 83
    • 0036800808 scopus 로고    scopus 로고
    • The predicted candidates of Arabidopsis plastid inner envelope membrane proteins and their expression profiles
    • Koo, A. J. K., and Ohlrogge, J. B. (2002). The predicted candidates of Arabidopsis plastid inner envelope membrane proteins and their expression profiles. Plant Physiol. 130, 823-836.
    • (2002) Plant Physiol. , vol.130 , pp. 823-836
    • Koo, A.J.K.1    Ohlrogge, J.B.2
  • 84
    • 0034089637 scopus 로고    scopus 로고
    • Molecular and functional properties of a highly purified transcriptionally active chromosomes from spinach chloroplasts
    • Krause, K., and Krupinska, K. (2000). Molecular and functional properties of a highly purified transcriptionally active chromosomes from spinach chloroplasts. Physiol. Plant. 109, 186-195.
    • (2000) Physiol. Plant. , vol.109 , pp. 186-195
    • Krause, K.1    Krupinska, K.2
  • 85
    • 0033804290 scopus 로고    scopus 로고
    • Disruption of plastid-encoded RNA polymerase genes in tobacco: Expression of only a distinct set of genes is not based on selective transcription of the plastid chromosome
    • Krause, M., Maier, R. M., Kofer, W., Krupinska, K., and Herrmann, R. G. (2000). Disruption of plastid-encoded RNA polymerase genes in tobacco: Expression of only a distinct set of genes is not based on selective transcription of the plastid chromosome. Mol. Gen. Genet. 263, 1022-1030.
    • (2000) Mol. Gen. Genet. , vol.263 , pp. 1022-1030
    • Krause, M.1    Maier, R.M.2    Kofer, W.3    Krupinska, K.4    Herrmann, R.G.5
  • 86
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar, S., Tamura, K., Jakobsen, I. B., and Nei, M. (2001). MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 87
    • 0030766634 scopus 로고    scopus 로고
    • Fine mapping of replication origins (oriA and oriB) in Nicotiana tabacum chloroplast DNA
    • Kunnimalaiyaan, M., and Nielsen, B. L. (1997). Fine mapping of replication origins (oriA and oriB) in Nicotiana tabacum chloroplast DNA. Nucleic Acids Res. 25, 3681-3686.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3681-3686
    • Kunnimalaiyaan, M.1    Nielsen, B.L.2
  • 88
    • 0026014556 scopus 로고
    • The replication, differentiation, and inheritance of plastids with emphasis on the concept of organelle nuclei
    • Kuroiwa, T. (1991). The replication, differentiation, and inheritance of plastids with emphasis on the concept of organelle nuclei. Int. Rev. Cytol. 128, 1-62.
    • (1991) Int. Rev. Cytol. , vol.128 , pp. 1-62
    • Kuroiwa, T.1
  • 89
    • 0031901605 scopus 로고    scopus 로고
    • The primitive red algae Cyanidium caldarium and Cyanidioschyzon merolae as model system for investigating the dividing apparatus of mitochondria and plastids
    • Kuroiwa, T. (1998). The primitive red algae Cyanidium caldarium and Cyanidioschyzon merolae as model system for investigating the dividing apparatus of mitochondria and plastids. BioEssays 20, 344-354.
    • (1998) BioEssays , vol.20 , pp. 344-354
    • Kuroiwa, T.1
  • 90
    • 0000492502 scopus 로고
    • The chloroplast nucleus: Distribution, number, size, and shape, and a model for the multiplication of the chloroplast genome during chloroplast development
    • Kuroiwa, T., Suzuki, T., Ogawa, K., and Kawano, S. (1981). The chloroplast nucleus: Distribution, number, size, and shape, and a model for the multiplication of the chloroplast genome during chloroplast development, Plant Cell Physiol. 22, 381-396.
    • (1981) Plant Cell Physiol. , vol.22 , pp. 381-396
    • Kuroiwa, T.1    Suzuki, T.2    Ogawa, K.3    Kawano, S.4
  • 91
    • 0033941145 scopus 로고    scopus 로고
    • Complementary expression of two plastid-localized sigma-like factors in maize
    • Lahiri, S. D., and Allison, L. A. (2000). Complementary expression of two plastid-localized sigma-like factors in maize. Plant Physiol, 123, 883-894,
    • (2000) Plant Physiol. , vol.123 , pp. 883-894
    • Lahiri, S.D.1    Allison, L.A.2
  • 92
    • 0034628462 scopus 로고    scopus 로고
    • Ancestral chloroplast genome in Mesostigma viride reveals and early branch of green plant evolution
    • Lemieux, C., Otis, C., and Turmel, M. (2000). Ancestral chloroplast genome in Mesostigma viride reveals and early branch of green plant evolution. Nature 403, 649-652.
    • (2000) Nature , vol.403 , pp. 649-652
    • Lemieux, C.1    Otis, C.2    Turmel, M.3
  • 93
    • 0031734554 scopus 로고    scopus 로고
    • Nuclear control of plastid and mitochondrial development in higher plants
    • Leon, P., Aroyo, A., and Mackenzie, S. (1998). Nuclear control of plastid and mitochondrial development in higher plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49, 453-480.
    • (1998) Annu. Rev. Plant Physiol. Plant Mol. Biol. , vol.49 , pp. 453-480
    • Leon, P.1    Aroyo, A.2    Mackenzie, S.3
  • 94
    • 0033521650 scopus 로고    scopus 로고
    • In vitro characterization of the tobacco rpoB promoter reveals a core sequence motif conserved between phage-type plastid and plant mitochondrial promoters
    • Liere, K., and Maliga, P. (1999). In vitro characterization of the tobacco rpoB promoter reveals a core sequence motif conserved between phage-type plastid and plant mitochondrial promoters. EMBO J. 18, 249-257.
    • (1999) EMBO J. , vol.18 , pp. 249-257
    • Liere, K.1    Maliga, P.2
  • 95
    • 0035097645 scopus 로고    scopus 로고
    • Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants
    • Lilly, J. W., Havey, M. J., Jackson, S. A., and Jiang, J. (2001). Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants. Plant Cell 13, 245-254.
    • (2001) Plant Cell , vol.13 , pp. 245-254
    • Lilly, J.W.1    Havey, M.J.2    Jackson, S.A.3    Jiang, J.4
  • 96
    • 0029828944 scopus 로고    scopus 로고
    • Addition of destabilizing poly(A)-rich sequences to endonuclease cleavage sites during the degradation of chloroplast mRNA
    • Lisitsky, I., Klaff, P., and Schuster, G. (1996). Addition of destabilizing poly(A)-rich sequences to endonuclease cleavage sites during the degradation of chloroplast mRNA. Proc. Natl. Acad. Sci. USA 93, 13398-13403.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 13398-13403
    • Lisitsky, I.1    Klaff, P.2    Schuster, G.3
  • 97
    • 0036464536 scopus 로고    scopus 로고
    • Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana
    • Lorkovic, Z. J., and Barta, A. (2002). Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res. 30, 623-635.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 623-635
    • Lorkovic, Z.J.1    Barta, A.2
  • 98
    • 0000788076 scopus 로고
    • Co-immunolocatization of topoisomerase II and chloroplast DNA in developing, dividing and mature wheat chloroplasts
    • Marrison, J. L., and Leech, R. M. (1992). Co-immunolocatization of topoisomerase II and chloroplast DNA in developing, dividing and mature wheat chloroplasts. Plant J. 2, 783-790.
    • (1992) Plant J. , vol.2 , pp. 783-790
    • Marrison, J.L.1    Leech, R.M.2
  • 99
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin, W., Rujan, T., Richly, E., Hansen, A., Cornelsen, S., Lins, T., Leister, D., Stoebe, B., Hasegawa, M., and Penny, D. (2002). Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc. Natl. Acad. Sci. USA 99, 12246-12251.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5    Lins, T.6    Leister, D.7    Stoebe, B.8    Hasegawa, M.9    Penny, D.10
  • 101
    • 0033134643 scopus 로고    scopus 로고
    • Conservation of structure and cold-regulation of RNA-binding proteins in cyanobacteria: Probable convergent evolution with eukaryotic glycine-rich RNA-binding proteins
    • Maruyama, K., Sato, N., and Ohta, N. (1999). Conservation of structure and cold-regulation of RNA-binding proteins in cyanobacteria: probable convergent evolution with eukaryotic glycine-rich RNA-binding proteins, Nucleic Acids Res. 27, 2029-2036.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 2029-2036
    • Maruyama, K.1    Sato, N.2    Ohta, N.3
  • 103
    • 0025096666 scopus 로고
    • Tagetitoxin inhibits RNA synthesis directed by RNA polymerases from chloroplasts and Escherichia coli
    • Mathews, D. E., and Durbin, R. D. (1990). Tagetitoxin inhibits RNA synthesis directed by RNA polymerases from chloroplasts and Escherichia coli. J. Biol. Chem. 265, 493-498.
    • (1990) J. Biol. Chem. , vol.265 , pp. 493-498
    • Mathews, D.E.1    Durbin, R.D.2
  • 104
    • 0027643498 scopus 로고
    • Polyamines, chromatin structure and transcription
    • Matthews, H. R. (1993). Polyamines, chromatin structure and transcription. BioEssays 15, 561-566.
    • (1993) BioEssays , vol.15 , pp. 561-566
    • Matthews, H.R.1
  • 106
    • 0035075425 scopus 로고    scopus 로고
    • Control of transcription by nucleoid proteins
    • McLeod, S. M., and Johnson, R. C. (2001). Control of transcription by nucleoid proteins. Curr. Opin. Microbiol. 4, 152-159.
    • (2001) Curr. Opin. Microbiol. , vol.4 , pp. 152-159
    • McLeod, S.M.1    Johnson, R.C.2
  • 107
    • 0023973777 scopus 로고
    • Localization of replication origins in pea chloroplast DNA
    • Meeker, R., Nielsen, B., and Tewari, K. K. (1988). Localization of replication origins in pea chloroplast DNA. Mol. Cell. Biol. 8, 1216-1223.
    • (1988) Mol. Cell. Biol. , vol.8 , pp. 1216-1223
    • Meeker, R.1    Nielsen, B.2    Tewari, K.K.3
  • 109
    • 0033402144 scopus 로고    scopus 로고
    • Isolation and phenotypic characterization of Chlamydomonas reinhardtii mutants defective in chloroplast DNA segregation
    • Misumi, O., Suzuki, L., Nishimura, Y., Sakai, A., Kawano, S., Kuroiwa, H., and Kuroiwa, T. (1999). Isolation and phenotypic characterization of Chlamydomonas reinhardtii mutants defective in chloroplast DNA segregation. Protoplasma 209, 273-282.
    • (1999) Protoplasma , vol.209 , pp. 273-282
    • Misumi, O.1    Suzuki, L.2    Nishimura, Y.3    Sakai, A.4    Kawano, S.5    Kuroiwa, H.6    Kuroiwa, T.7
  • 110
    • 0002022869 scopus 로고
    • Quantitative fluorescence microscopy on dynamic changes of plastid nucleoids during wheat development
    • Miyamura, S., Nagata, T., and Kuroiwa, T. (1986). Quantitative fluorescence microscopy on dynamic changes of plastid nucleoids during wheat development. Protoplasma 133, 66-72.
    • (1986) Protoplasma , vol.133 , pp. 66-72
    • Miyamura, S.1    Nagata, T.2    Kuroiwa, T.3
  • 111
    • 0033861250 scopus 로고    scopus 로고
    • Processing and degradation of chloroplast mRNA
    • Monde, R. A., Schuster, G., and Stern, D. B. (2000). Processing and degradation of chloroplast mRNA. Biochimie 82, 573-582.
    • (2000) Biochimie , vol.82 , pp. 573-582
    • Monde, R.A.1    Schuster, G.2    Stern, D.B.3
  • 112
    • 0037040394 scopus 로고    scopus 로고
    • Microbial minimalism: Genome reduction in bacterial pathogens
    • Moran, N. A. (2002). Microbial minimalism: Genome reduction in bacterial pathogens. Cell 108, 583-586.
    • (2002) Cell , vol.108 , pp. 583-586
    • Moran, N.A.1
  • 113
    • 0034604170 scopus 로고    scopus 로고
    • The origin of red algae and the evolution of chloroplasts
    • Moreira, D., Le Guyader, H., and Philippe, H. (2000). The origin of red algae and the evolution of chloroplasts. Nature 405, 69-72.
    • (2000) Nature , vol.405 , pp. 69-72
    • Moreira, D.1    Le Guyader, H.2    Philippe, H.3
  • 114
    • 0032981534 scopus 로고    scopus 로고
    • Circadian-regulated expression of a nuclear-encoded plastid sigma factor gene (sigA) in wheat seedling
    • Morikawa, K., Ito, S., Tsunoyama, Y., Nakahira, Y., Shirano, T., and Toyoshima, Y. (1999). Circadian-regulated expression of a nuclear-encoded plastid sigma factor gene (sigA) in wheat seedling. FEBS Lett. 451, 275-278.
    • (1999) FEBS Lett. , vol.451 , pp. 275-278
    • Morikawa, K.1    Ito, S.2    Tsunoyama, Y.3    Nakahira, Y.4    Shirano, T.5    Toyoshima, Y.6
  • 115
    • 0036776141 scopus 로고    scopus 로고
    • Functional analysis of plastid DNA replication origins in tobacco by targeted inactivation
    • Mühlbauer, S. K., Lössl, A., Tzekova, L., Zou, Z., and Koop, H.-U. (2002). Functional analysis of plastid DNA replication origins in tobacco by targeted inactivation. Plant J. 32, 175-184.
    • (2002) Plant J. , vol.32 , pp. 175-184
    • Mühlbauer, S.K.1    Lössl, A.2    Tzekova, L.3    Zou, Z.4    Koop, H.-U.5
  • 117
    • 0033955672 scopus 로고    scopus 로고
    • Protease activity of CND41, a chloroplast nucleoid DNA-binding protein, isolated from cultured tobacco cells
    • Murakami, S., Kondo, Y., Nakano, T., and Sato, F. (2000). Protease activity of CND41, a chloroplast nucleoid DNA-binding protein, isolated from cultured tobacco cells. FEBS Lett. 468, 15-18.
    • (2000) FEBS Lett. , vol.468 , pp. 15-18
    • Murakami, S.1    Kondo, Y.2    Nakano, T.3    Sato, F.4
  • 118
    • 0035808422 scopus 로고    scopus 로고
    • Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma
    • Nakamura, T., Ohta, M., Sugita, M., and Sugiura, M. (2001). Chloroplast ribonucleoproteins function as a stabilizing factor of ribosome-free mRNAs in the stroma. J. Biol. Chem. 276, 147-152.
    • (2001) J. Biol. Chem. , vol.276 , pp. 147-152
    • Nakamura, T.1    Ohta, M.2    Sugita, M.3    Sugiura, M.4
  • 119
    • 0031225204 scopus 로고    scopus 로고
    • A novel protein with DNA binding activity from tobacco chloroplast nucleoids
    • Nakano, T., Murakami, S., Shoji, T., Yoshida, S., Yamada, Y., and Sato, F. (1997). A novel protein with DNA binding activity from tobacco chloroplast nucleoids. Plant Cell 9, 1673-1682.
    • (1997) Plant Cell , vol.9 , pp. 1673-1682
    • Nakano, T.1    Murakami, S.2    Shoji, T.3    Yoshida, S.4    Yamada, Y.5    Sato, F.6
  • 120
    • 0001652494 scopus 로고
    • Analysis of nucleoid-proteins in tobacco chloroplasts
    • Nakano, T., Sato, F., and Yamada, Y. (1993). Analysis of nucleoid-proteins in tobacco chloroplasts. Plant Cell Physiol. 34, 873-880.
    • (1993) Plant Cell Physiol. , vol.34 , pp. 873-880
    • Nakano, T.1    Sato, F.2    Yamada, Y.3
  • 121
    • 0028863523 scopus 로고
    • An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences
    • Nelissen, B., Van de Peer, Y., Wilmotte, A., and De Wachter, R. (1995). An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences. Mol. Biol. Evol. 12, 1166-1173.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1166-1173
    • Nelissen, B.1    Van De Peer, Y.2    Wilmotte, A.3    De Wachter, R.4
  • 122
    • 0000907447 scopus 로고
    • Studies on plastid-nuclei (nucleoids) in Nicotiana tabacum L. III. Isolation of chloroplast-nuclei from mesophyll protoplasts and identification of chloroplast DNA-binding proteins
    • Nemoto, Y., Kawano, S., Kondoh, K., Nagata, T., and Kuroiwa, T. (1989). Studies on plastid-nuclei (nucleoids) in Nicotiana tabacum L. III. Isolation of chloroplast-nuclei from mesophyll protoplasts and identification of chloroplast DNA-binding proteins. Plant Cell Physiol. 31, 767-776.
    • (1989) Plant Cell Physiol. , vol.31 , pp. 767-776
    • Nemoto, Y.1    Kawano, S.2    Kondoh, K.3    Nagata, T.4    Kuroiwa, T.5
  • 123
    • 10544236352 scopus 로고
    • Studies on plastid-nuclei (nucleoids) in Nicotiana tabacum L. I. Isolation of proplastid-nuclei from cultured cells and identification of proplastid-nuclear proteins
    • Nemoto, Y., Kawano, S., Nakamura, S., Mita, T., Nagata, T., and Kuroiwa, T. (1988). Studies on plastid-nuclei (nucleoids) in Nicotiana tabacum L. I. Isolation of proplastid-nuclei from cultured cells and identification of proplastid-nuclear proteins. Plant Cell Physiol. 29, 167-177.
    • (1988) Plant Cell Physiol. , vol.29 , pp. 167-177
    • Nemoto, Y.1    Kawano, S.2    Nakamura, S.3    Mita, T.4    Nagata, T.5    Kuroiwa, T.6
  • 124
    • 0026176404 scopus 로고
    • Pea chloroplast DNA primase: Characterization and role in initiation of replication
    • Nielsen, B. L., Rajasekhar, V. K., and Tewari, K. K. (1991). Pea chloroplast DNA primase: Characterization and role in initiation of replication. Plant Mol. Biol. 16, 1019-1034.
    • (1991) Plant Mol. Biol. , vol.16 , pp. 1019-1034
    • Nielsen, B.L.1    Rajasekhar, V.K.2    Tewari, K.K.3
  • 125
    • 0344116519 scopus 로고
    • Pea chloroplast topoisomerase I: Purification, characterization, and role in replication
    • Nielsen, B. L., and Tewari, K. K. (1988). Pea chloroplast topoisomerase I: Purification, characterization, and role in replication. Plant Mol. Biol. 11, 3-14.
    • (1988) Plant Mol. Biol. , vol.11 , pp. 3-14
    • Nielsen, B.L.1    Tewari, K.K.2
  • 126
    • 0037381973 scopus 로고    scopus 로고
    • The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids
    • Nozaki, H., Matsuzaki, H., Takahara, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Shin-I, T., Kohara, Y., Ogasawara, N., and Kuroiwa, T. (2003). The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J. Mol. Evol 56, 485-497.
    • (2003) J. Mol. Evol. , vol.56 , pp. 485-497
    • Nozaki, H.1    Matsuzaki, H.2    Takahara, M.3    Misumi, O.4    Kuroiwa, H.5    Hasegawa, M.6    Shin-I, T.7    Kohara, Y.8    Ogasawara, N.9    Kuroiwa, T.10
  • 128
    • 0036302161 scopus 로고    scopus 로고
    • The plastid transcription kinase from mustard (Sinapis alba L.): A nuclear-encoded CK2-type chloroplast enzyme with redox-sensitive function
    • Ogrzewalla, K., Piotrowski, M., Reinbothe, S., and Link, G. (2002). The plastid transcription kinase from mustard (Sinapis alba L.): A nuclear-encoded CK2-type chloroplast enzyme with redox-sensitive function. Eur. J. Biochem. 269, 3329-3337.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 3329-3337
    • Ogrzewalla, K.1    Piotrowski, M.2    Reinbothe, S.3    Link, G.4
  • 129
    • 0029240302 scopus 로고
    • Three types of nuclear genes encoding chloroplast RNA-binding proteins (cp29, cp31 and cp33) are present in Arabidopsis thaliana: Presence of cp31 in chloroplasts and its homologue in nuclei/cytoplasms
    • Ohta, M., Sugita, M., and Sugiura, M. (1995). Three types of nuclear genes encoding chloroplast RNA-binding proteins (cp29, cp31 and cp33) are present in Arabidopsis thaliana: Presence of cp31 in chloroplasts and its homologue in nuclei/cytoplasms. Plant Mol. Biol. 27, 529-539.
    • (1995) Plant Mol. Biol. , vol.27 , pp. 529-539
    • Ohta, M.1    Sugita, M.2    Sugiura, M.3
  • 130
    • 0032534002 scopus 로고    scopus 로고
    • Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioscyzon merolae deduced from the complete nucleotide sequence
    • Ohta, N., Sato, N., and Kuroiwa, T. (1998). Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioscyzon merolae deduced from the complete nucleotide sequence. Nucleic Acids Res. 26, 5190-5198.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 5190-5198
    • Ohta, N.1    Sato, N.2    Kuroiwa, T.3
  • 131
    • 0000651902 scopus 로고    scopus 로고
    • The organellar genomes of Cyanidioschyzon merolae
    • (J. Seckbach, Ed.) Kluwer Academic, Dordrecht
    • Ohta, N., Sato, N., and Kuroiwa, T. (1999). The organellar genomes of Cyanidioschyzon merolae. In "Enigmatic Microorganisms and Life in Extreme Environment." (J. Seckbach, Ed.), pp. 139-149. Kluwer Academic, Dordrecht.
    • (1999) Enigmatic Microorganisms and Life in Extreme Environment , pp. 139-149
    • Ohta, N.1    Sato, N.2    Kuroiwa, T.3
  • 132
    • 0031436146 scopus 로고    scopus 로고
    • Analysis of the cluster of ribosomal protein genes in the plastid genome of a unicellular red alga Cyanidioschyzon merolae: Translocation of the str cluster as an early event in the rhodophyte-chromophyte lineage of plastid evolution
    • Ohta, N., Sato, N., Nozaki, H., and Kuroiwa, T. (1997). Analysis of the cluster of ribosomal protein genes in the plastid genome of a unicellular red alga Cyanidioschyzon merolae: Translocation of the str cluster as an early event in the rhodophyte-chromophyte lineage of plastid evolution. J. Mol. Evol. 45, 688-695.
    • (1997) J. Mol. Evol. , vol.45 , pp. 688-695
    • Ohta, N.1    Sato, N.2    Nozaki, H.3    Kuroiwa, T.4
  • 133
    • 0034739810 scopus 로고    scopus 로고
    • Characterization of two plastids factors, SigA and SigB, that mainly function in matured chloroplasts in Nicotiana tabacum
    • Oikawa, K., Fujiwara, M., Nakazato, E., Tanaka, K., and Takahashi, H. (2000). Characterization of two plastids factors, SigA and SigB, that mainly function in matured chloroplasts in Nicotiana tabacum. Gene 261, 221-228.
    • (2000) Gene , vol.261 , pp. 221-228
    • Oikawa, K.1    Fujiwara, M.2    Nakazato, E.3    Tanaka, K.4    Takahashi, H.5
  • 134
    • 0032515916 scopus 로고    scopus 로고
    • Two types of differentially photo-regulated nuclear genes that encode sigma factors for chloroplast RNA polymerase in the red alga Cyanidium caldarium strain RK-1
    • Oikawa, K., Tanaka, K., and Takahashi, H. (1998). Two types of differentially photo-regulated nuclear genes that encode sigma factors for chloroplast RNA polymerase in the red alga Cyanidium caldarium strain RK-1. Gene 210, 277-285.
    • (1998) Gene , vol.210 , pp. 277-285
    • Oikawa, K.1    Tanaka, K.2    Takahashi, H.3
  • 135
    • 0037327022 scopus 로고    scopus 로고
    • The symbiotic birth and spread of plastids: How many times and whodunit?
    • Palmer, J. D. (2003). The symbiotic birth and spread of plastids: How many times and whodunit? J. Phycol. 39, 4-11.
    • (2003) J. Phycol. , vol.39 , pp. 4-11
    • Palmer, J.D.1
  • 136
    • 0035852247 scopus 로고    scopus 로고
    • Dual targeting to mitochondria and chloroplasts
    • Peeters, N., and Small, I. (2001). Dual targeting to mitochondria and chloroplasts. Biochiem. Biophys. Acta 1541, 54-63.
    • (2001) Biochiem. Biophys. Acta , vol.1541 , pp. 54-63
    • Peeters, N.1    Small, I.2
  • 137
    • 0034026047 scopus 로고    scopus 로고
    • Proteomics of the chloroplast: Systematic identification and targeting analysis of luminal and peripheral thylakoid proteins
    • Peltier, J.-B., Friso, G., Kalume, D. E., Roepstorff, P., Nilsson, F., Adamska, I., and van Wijk, K. J. (2000). Proteomics of the chloroplast: Systematic identification and targeting analysis of luminal and peripheral thylakoid proteins. Plant Cell 12, 319-341.
    • (2000) Plant Cell , vol.12 , pp. 319-341
    • Peltier, J.-B.1    Friso, G.2    Kalume, D.E.3    Roepstorff, P.4    Nilsson, F.5    Adamska, I.6    Van Wijk, K.J.7
  • 138
    • 0028408167 scopus 로고
    • Separation of two classes of plastid DNA-dependent RNA-polymerases that are differentially expressed in mustard (Sinapis alba L.) seedlings
    • Pfannschmidt, T., and Link, G. (1994). Separation of two classes of plastid DNA-dependent RNA-polymerases that are differentially expressed in mustard (Sinapis alba L.) seedlings. Plant Mol. Biol. 25, 69-81.
    • (1994) Plant Mol. Biol. , vol.25 , pp. 69-81
    • Pfannschmidt, T.1    Link, G.2
  • 139
    • 0031430821 scopus 로고    scopus 로고
    • The A and B forms of plastid DNA-dependent RNA polymerase from mustard (Sinapis alba L.) transcribe the same genes in a different developmental context
    • Pfannschmidt, T., and Link, G. (1997). The A and B forms of plastid DNA-dependent RNA polymerase from mustard (Sinapis alba L.) transcribe the same genes in a different developmental context. Mol. Gen. Genet. 257, 35-44.
    • (1997) Mol. Gen. Genet. , vol.257 , pp. 35-44
    • Pfannschmidt, T.1    Link, G.2
  • 140
    • 0033962832 scopus 로고    scopus 로고
    • The multisubunit chloroplast RNA polymerase A from mustard (Sinapis alba L.): Integration of prokaryotic core into a larger complex with organelle-specific functions
    • Pfannschmidt, T., Ogrzewalla, K., Baginsky, S., Sickmann, A., Meyer, H. E., and Link, G. (2000). The multisubunit chloroplast RNA polymerase A from mustard (Sinapis alba L.): Integration of prokaryotic core into a larger complex with organelle-specific functions. Eur. J. Biochem. 267, 253-261.
    • (2000) Eur. J. Biochem. , vol.267 , pp. 253-261
    • Pfannschmidt, T.1    Ogrzewalla, K.2    Baginsky, S.3    Sickmann, A.4    Meyer, H.E.5    Link, G.6
  • 142
    • 0037094426 scopus 로고    scopus 로고
    • Two RpoT genes of Physcomitrella patens encode phage-type RNA polymerases with dual targeting to mitochondria and plastids
    • Richter, U., Kiessling, J., Hedtke, B., Decker, E., Reski, R., Börner, T., and Weihe, A. (2002). Two RpoT genes of Physcomitrella patens encode phage-type RNA polymerases with dual targeting to mitochondria and plastids. Gene 290, 95-105.
    • (2002) Gene , vol.290 , pp. 95-105
    • Richter, U.1    Kiessling, J.2    Hedtke, B.3    Decker, E.4    Reski, R.5    Börner, T.6    Weihe, A.7
  • 144
    • 0018409915 scopus 로고
    • Generic assignments, strain histories and properties of pure cultures of cyanobacteria
    • Rippka, R., Deruelles, J., Waterbury, J. B., Herdman, M., and Stanier, R. Y. (1979). Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J. Gen. Microbiol. 111, 1-61.
    • (1979) J. Gen. Microbiol. , vol.111 , pp. 1-61
    • Rippka, R.1    Deruelles, J.2    Waterbury, J.B.3    Herdman, M.4    Stanier, R.Y.5
  • 145
    • 0035794689 scopus 로고    scopus 로고
    • Identification of an RNA-protein complex involved in chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii
    • Rivier, C., Goldschmidt-Clermont, M., and Rochaix, J. D. (2001). Identification of an RNA-protein complex involved in chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii. EMBO J. 20, 1765-1773.
    • (2001) EMBO J. , vol.20 , pp. 1765-1773
    • Rivier, C.1    Goldschmidt-Clermont, M.2    Rochaix, J.D.3
  • 146
    • 0026621244 scopus 로고
    • Post-transcriptional steps in the expression of chloroplast genes
    • Rochaix, J.-D. (1992). Post-transcriptional steps in the expression of chloroplast genes. Annu. Rev. Cell Biol. 8, 1-28.
    • (1992) Annu. Rev. Cell Biol. , vol.8 , pp. 1-28
    • Rochaix, J.-D.1
  • 147
    • 0035141874 scopus 로고    scopus 로고
    • Posttranscriptional control of chloroplast gene expression: From RNA to photosynthetic complex
    • Rochaix, J.-D. (2001). Posttranscriptional control of chloroplast gene expression: From RNA to photosynthetic complex. Plant Physiol. 125, 142-144.
    • (2001) Plant Physiol. , vol.125 , pp. 142-144
    • Rochaix, J.-D.1
  • 148
    • 0343794843 scopus 로고
    • Characterization of a novel, low-molecular-weight DNA-binding protein from Escherichia coli
    • Rouvière-Yaniv, J., and Gros, F. (1975). Characterization of a novel, low-molecular-weight DNA-binding protein from Escherichia coli. Proc. Natl. Acad. Sci. USA 72, 3428-3432.
    • (1975) Proc. Natl. Acad. Sci. USA , vol.72 , pp. 3428-3432
    • Rouvière-Yaniv, J.1    Gros, F.2
  • 149
    • 0035535565 scopus 로고    scopus 로고
    • In vitro transcription/DNA synthesis system using isolated organelle-nuclei: Application to the analysis on the mechanisms regulating the function of organelle genomes
    • Sakai, A. (2001). In vitro transcription/DNA synthesis system using isolated organelle-nuclei: Application to the analysis on the mechanisms regulating the function of organelle genomes. J. Plant Res. 114, 199-211.
    • (2001) J. Plant Res. , vol.114 , pp. 199-211
    • Sakai, A.1
  • 150
    • 0033043738 scopus 로고    scopus 로고
    • Plastid gene expression during amyloplast formation in cultured tobacco cells
    • Sakai, A., Miyazawa, Y., Suzuki, T., Sasaki, N., Kawano, S., and Kuroiwa, T. (1999). Plastid gene expression during amyloplast formation in cultured tobacco cells. J. Plant Physiol. 154, 71-78.
    • (1999) J. Plant Physiol. , vol.154 , pp. 71-78
    • Sakai, A.1    Miyazawa, Y.2    Suzuki, T.3    Sasaki, N.4    Kawano, S.5    Kuroiwa, T.6
  • 151
    • 0032169941 scopus 로고    scopus 로고
    • Transcriptional activities of the chloroplast-nuclei and proplastid-nuclei isolated from tobacco exhibit different sensitivities to tagetitoxin: Implication of the presence of distinct RNA polymerase
    • Sakai, A., Saito, C., Inada, N., and Kuroiwa, T. (1997). Transcriptional activities of the chloroplast-nuclei and proplastid-nuclei isolated from tobacco exhibit different sensitivities to tagetitoxin: Implication of the presence of distinct RNA polymerase. Plant Cell Physiol. 39, 923-934.
    • (1997) Plant Cell Physiol. , vol.39 , pp. 923-934
    • Sakai, A.1    Saito, C.2    Inada, N.3    Kuroiwa, T.4
  • 152
    • 0031817565 scopus 로고    scopus 로고
    • Comparative analysis of plastid gene expression in tobacco chloroplasts and proplastids: Relationship between transcription and transcript accumulation
    • Sakai, A., Suzuki, T., Miyamura, Y., Kawano, S., Nagata, T., and Kuroiwa, T. (1998a). Comparative analysis of plastid gene expression in tobacco chloroplasts and proplastids: Relationship between transcription and transcript accumulation. Plant Cell Physiol. 39, 581-589.
    • (1998) Plant Cell Physiol. , vol.39 , pp. 581-589
    • Sakai, A.1    Suzuki, T.2    Miyamura, Y.3    Kawano, S.4    Nagata, T.5    Kuroiwa, T.6
  • 153
    • 0032489777 scopus 로고    scopus 로고
    • Simultaneous isolation of cell-nuclei, plastid-nuclei and mitochondrial-nuclei from cultured tobacco cells; comparative analysis of their transcriptional activities in invitro
    • Sakai, A., Suzuki, T., Miyazawa, Y., and Kuroiwa, T. (1998b). Simultaneous isolation of cell-nuclei, plastid-nuclei and mitochondrial-nuclei from cultured tobacco cells; comparative analysis of their transcriptional activities in invitro. Plant Sci. 133, 17-31.
    • (1998) Plant Sci. , vol.133 , pp. 17-31
    • Sakai, A.1    Suzuki, T.2    Miyazawa, Y.3    Kuroiwa, T.4
  • 155
    • 0034019062 scopus 로고    scopus 로고
    • SISEQ: Manipulation of multiple sequence and large database files for common platforms
    • Sato, N. (2000). SISEQ: Manipulation of multiple sequence and large database files for common platforms. Bioinformatics 16, 180-181.
    • (2000) Bioinformatics , vol.16 , pp. 180-181
    • Sato, N.1
  • 156
    • 0035209386 scopus 로고    scopus 로고
    • Was the evolution of plastid genetic machinery discontinuous?
    • Sato, N. (2001). Was the evolution of plastid genetic machinery discontinuous? Trends Plant Sci. 6, 151-156.
    • (2001) Trends Plant Sci. , vol.6 , pp. 151-156
    • Sato, N.1
  • 157
    • 0042272064 scopus 로고    scopus 로고
    • Comparative analysis of the genomes of cyanobacteria and plants
    • Sato, N. (2002). Comparative analysis of the genomes of cyanobacteria and plants. Genome Informatics 13, 173-182.
    • (2002) Genome Informatics , vol.13 , pp. 173-182
    • Sato, N.1
  • 158
    • 0027511159 scopus 로고
    • Detection and characterization of a plastid envelope DNA-binding protein which may anchor plastid nucleoids
    • Sato, N., Albrieux, C., Joyard, J., Douce, R., and Kuroiwa, T. (1993). Detection and characterization of a plastid envelope DNA-binding protein which may anchor plastid nucleoids. EMBO J. 12, 555-561.
    • (1993) EMBO J. , vol.12 , pp. 555-561
    • Sato, N.1    Albrieux, C.2    Joyard, J.3    Douce, R.4    Kuroiwa, T.5
  • 159
    • 0006919860 scopus 로고
    • DNA-binding proteins mediate interaction of nucleoids with envelope membrane in developing plastids
    • (P. Mathis, Ed.) Kluwer Academic, Dordrecht
    • Sato, N., Misumi, O., Joyard, J., and Douce, R. (1995). DNA-binding proteins mediate interaction of nucleoids with envelope membrane in developing plastids. In "Photosynthesis: From Light to Biosphere" (P. Mathis, Ed.), Vol. III, pp. 635-638. Kluwer Academic, Dordrecht.
    • (1995) Photosynthesis: From Light to Biosphere , vol.3 , pp. 635-638
    • Sato, N.1    Misumi, O.2    Joyard, J.3    Douce, R.4
  • 160
    • 0031473189 scopus 로고    scopus 로고
    • Dynamics of localization and protein composition of plastid nucleoid in light-grown pea seedlings
    • Sato, N., Misumi, O., Shinada, Y., Sasaki, M., and Yoine, M. (1997). Dynamics of localization and protein composition of plastid nucleoid in light-grown pea seedlings. Protoplasma 200, 163-173.
    • (1997) Protoplasma , vol.200 , pp. 163-173
    • Sato, N.1    Misumi, O.2    Shinada, Y.3    Sasaki, M.4    Yoine, M.5
  • 161
    • 0035808242 scopus 로고    scopus 로고
    • The 70-kDa major DNA-compacting protein of the chloroplast nucleoid is sulfite reductase
    • Sato, N., Nakayama, M., and Hase, T. (2001). The 70-kDa major DNA-compacting protein of the chloroplast nucleoid is sulfite reductase. FEBS Lett. 487, 347-350.
    • (2001) FEBS Lett. , vol.487 , pp. 347-350
    • Sato, N.1    Nakayama, M.2    Hase, T.3
  • 162
    • 0032075999 scopus 로고    scopus 로고
    • Molecular characterization of the PEND protein, a novel bZIP protein present in the envelope membrane that is the site of nucleoid replication in developing plastids
    • Sato, N., Ohshima, K., Watanabe, A., Nishiyama, Y., Joyard, J., and Douce, R. (1998). Molecular characterization of the PEND protein, a novel bZIP protein present in the envelope membrane that is the site of nucleoid replication in developing plastids. Plant Cell 10, 859-872.
    • (1998) Plant Cell , vol.10 , pp. 859-872
    • Sato, N.1    Ohshima, K.2    Watanabe, A.3    Nishiyama, Y.4    Joyard, J.5    Douce, R.6
  • 163
    • 0035369546 scopus 로고    scopus 로고
    • DNA-binding specificity and dimerization of the DNA-binding domain of the PEND protein in the chloroplast envelope membrane
    • Sato, N., and Ohta, N. (2001). DNA-binding specificity and dimerization of the DNA-binding domain of the PEND protein in the chloroplast envelope membrane. Nucleic Acids. Res. 29, 2244-2250.
    • (2001) Nucleic Acids. Res. , vol.29 , pp. 2244-2250
    • Sato, N.1    Ohta, N.2
  • 164
    • 0032724513 scopus 로고    scopus 로고
    • Do plastid envelope membranes play a role in the expression of the plastid genome?
    • Sato, N., Rolland, N., Block, M. A., and Joyard, J. (1999). Do plastid envelope membranes play a role in the expression of the plastid genome? Biochimie 81, 619-629.
    • (1999) Biochimie , vol.81 , pp. 619-629
    • Sato, N.1    Rolland, N.2    Block, M.A.3    Joyard, J.4
  • 165
    • 85030915453 scopus 로고    scopus 로고
    • Discontinuous evolution of plastid genomic machinery: Radical replacement of major DNA-binding proteins
    • (M. Sugiura, Ed.), Logos Verlag, Berlin
    • Sato, N., Sekine, K., Kabeya, Y., Ehira, S., Onuma, M., and Ohta, N. (2003). Discontinuous evolution of plastid genomic machinery: Radical replacement of major DNA-binding proteins. In "(Endo)Symbiosis and Eukaryotic Organells" (M. Sugiura, Ed.), Logos Verlag, Berlin.
    • (2003) (Endo)Symbiosis and Eukaryotic Organells
    • Sato, N.1    Sekine, K.2    Kabeya, Y.3    Ehira, S.4    Onuma, M.5    Ohta, N.6
  • 166
    • 0033136541 scopus 로고    scopus 로고
    • Developmental stage-specific multi-subunit plastid RNA polymerases (PEP) in wheat
    • Satoh, J., Baba, K., Nakahira, Y., Tsunoyama, Y., Shiina, T., and Toyoshima, Y. (1999). Developmental stage-specific multi-subunit plastid RNA polymerases (PEP) in wheat. Plant J. 18, 407-415.
    • (1999) Plant J. , vol.18 , pp. 407-415
    • Satoh, J.1    Baba, K.2    Nakahira, Y.3    Tsunoyama, Y.4    Shiina, T.5    Toyoshima, Y.6
  • 167
    • 0035082732 scopus 로고    scopus 로고
    • The plastid chromosome of spinach (Spinacia oleracea): Complete nucleotide sequence and gene organization
    • Schmitz-Linneweber, C., Maier, R. M., Alcaraz, J.-P., Cottet, A., Herrmann, R. G., and Mache, R. (2001). The plastid chromosome of spinach (Spinacia oleracea): Complete nucleotide sequence and gene organization. Plant Mol. Biol. 45, 307-315.
    • (2001) Plant Mol. Biol. , vol.45 , pp. 307-315
    • Schmitz-Linneweber, C.1    Maier, R.M.2    Alcaraz, J.-P.3    Cottet, A.4    Herrmann, R.G.5    Mache, R.6
  • 169
    • 0037025339 scopus 로고    scopus 로고
    • Reversible DNA conpaction by sulfite reductase regulates transcriptional activity of chloroplast nucleoids
    • Sekine, K., Hase, T., and Sato, N. (2002). Reversible DNA conpaction by sulfite reductase regulates transcriptional activity of chloroplast nucleoids. J. Biol. Chem. 277, 24399-24404.
    • (2002) J. Biol. Chem. , vol.277 , pp. 24399-24404
    • Sekine, K.1    Hase, T.2    Sato, N.3
  • 170
    • 0034618559 scopus 로고    scopus 로고
    • Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS
    • Shigenobu, S., Watanabe, H., Hattori, M., Sakaki, Y., and Ishikawa, H. (2000). Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407, 81-86.
    • (2000) Nature , vol.407 , pp. 81-86
    • Shigenobu, S.1    Watanabe, H.2    Hattori, M.3    Sakaki, Y.4    Ishikawa, H.5
  • 172
    • 0037324534 scopus 로고    scopus 로고
    • A single origin of plastids revisited: Convergent evolution in organellar genome content
    • Stiller, J. W., Reel, D. C., and Johnson, J. C. (2003). A single origin of plastids revisited: Convergent evolution in organellar genome content. J. Phycol. 39, 95-105.
    • (2003) J. Phycol. , vol.39 , pp. 95-105
    • Stiller, J.W.1    Reel, D.C.2    Johnson, J.C.3
  • 173
    • 0026860017 scopus 로고
    • The chloroplast genome
    • Sugiura, M. (1992). The chloroplast genome. Plant Mol. Biol. 19, 149-168.
    • (1992) Plant Mol. Biol. , vol.19 , pp. 149-168
    • Sugiura, M.1
  • 174
    • 0032411339 scopus 로고    scopus 로고
    • Evolution and mechanism of translation in chloroplasts
    • Sugiura, M., Hirose, T., and Sugita, M. (1998). Evolution and mechanism of translation in chloroplasts. Annu. Rev. Genet. 32, 437-459.
    • (1998) Annu. Rev. Genet. , vol.32 , pp. 437-459
    • Sugiura, M.1    Hirose, T.2    Sugita, M.3
  • 175
    • 0344875209 scopus 로고    scopus 로고
    • Complete chloroplast DNA sequence of the moss Physcomitrella patens: Evidence for the loss and relocation of rpoA from the chloroplast to the nucleus
    • Sugiura, C., Kobayashi, Y., Aoki, S., Sugita, C., and Sugita, M. (2003). Complete chloroplast DNA sequence of the moss Physcomitrella patens: Evidence for the loss and relocation of rpoA from the chloroplast to the nucleus. Nucleic Acids Res. 31, 5324-5331.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5324-5331
    • Sugiura, C.1    Kobayashi, Y.2    Aoki, S.3    Sugita, C.4    Sugita, M.5
  • 176
    • 0033608976 scopus 로고    scopus 로고
    • Characterization of two chloroplast RNA polymerse sigma factors from Zea mays: Photoregulation and differential expression
    • Tan, S., and Troxler, R. (1999). Characterization of two chloroplast RNA polymerse sigma factors from Zea mays: Photoregulation and differential expression. Proc. Natl. Acad. Sci. USA 96, 5316-5321.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 5316-5321
    • Tan, S.1    Troxler, R.2
  • 177
    • 0030038746 scopus 로고    scopus 로고
    • Nuclear encoding of a chloroplast RNA polymerase sigma subunit in a red alga
    • Tanaka, K., Oikawa, K., Ohta, N., Kuroiwa, H., Kuroiwa, T., and Takahashi, H. (1996). Nuclear encoding of a chloroplast RNA polymerase sigma subunit in a red alga. Science 272, 1932-1935.
    • (1996) Science , vol.272 , pp. 1932-1935
    • Tanaka, K.1    Oikawa, K.2    Ohta, N.3    Kuroiwa, H.4    Kuroiwa, T.5    Takahashi, H.6
  • 178
    • 0030843866 scopus 로고    scopus 로고
    • Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana: Evidence for the sigma factor heterogeneity in higher plant plastids
    • Tanaka, K., Tozawa, Y., Mochizuki, N., Shinozaki, K., Nagatani, A., Wakasa, K., and Takahashi, H. (1997). Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana: Evidence for the sigma factor heterogeneity in higher plant plastids. FEBS Lett. 413, 309-313.
    • (1997) FEBS Lett. , vol.413 , pp. 309-313
    • Tanaka, K.1    Tozawa, Y.2    Mochizuki, N.3    Shinozaki, K.4    Nagatani, A.5    Wakasa, K.6    Takahashi, H.7
  • 179
    • 0001211235 scopus 로고
    • Regulatory interactions between nuclear and plastid genomes
    • Taylor, W. C. (1989). Regulatory interactions between nuclear and plastid genomes. Annu. Rev. Plant Physiol. Plant Mol. Biol. 40, 211-233.
    • (1989) Annu. Rev. Plant Physiol. Plant Mol. Biol. , vol.40 , pp. 211-233
    • Taylor, W.C.1
  • 180
    • 0345919868 scopus 로고    scopus 로고
    • Analysis of intracellular localization of the PEND protein
    • Abstract book
    • Terasawa, K., and Sato, N. (2003). Analysis of intracellular localization of the PEND protein. Plant Biology 2003, Abstract book.
    • (2003) Plant Biology 2003
    • Terasawa, K.1    Sato, N.2
  • 181
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 182
    • 0034813494 scopus 로고    scopus 로고
    • Analysis of barley chloroplast psbD light-responsive promoter elements in transplastomic tobacco
    • Thum, K. E., Kim, M., Morishige, D. T., Eibl, C., Koop, H.-U., and Mullet, J. E. (2001). Analysis of barley chloroplast psbD light-responsive promoter elements in transplastomic tobacco. Plant Mol. Biol. 47, 353-366.
    • (2001) Plant Mol. Biol. , vol.47 , pp. 353-366
    • Thum, K.E.1    Kim, M.2    Morishige, D.T.3    Eibl, C.4    Koop, H.-U.5    Mullet, J.E.6
  • 183
    • 0036498845 scopus 로고    scopus 로고
    • Cyanobacterial photosynthesis in the oceans: The origins and significance of divergent light-harvesting strategies
    • Ting, C. S., Rocap, G., King, J., and Chisholm, S. W. (2002). Cyanobacterial photosynthesis in the oceans: The origins and significance of divergent light-harvesting strategies. Trends Microbiol. 10, 134-142.
    • (2002) Trends Microbiol. , vol.10 , pp. 134-142
    • Ting, C.S.1    Rocap, G.2    King, J.3    Chisholm, S.W.4
  • 184
    • 0033621040 scopus 로고    scopus 로고
    • The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes
    • Turmel, M., Otis, C., and Lemieux, C. (1999). The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes. Proc. Natl. Acad. Sci. USA 96, 10248-10253.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 10248-10253
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 185
    • 0033166540 scopus 로고    scopus 로고
    • Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis
    • Turner, S., Pryer, K. M., Miao, V. P. W., and Palmer, J. D. (1999). Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. J. Eukaryot. Microbiol. 46, 327-338.
    • (1999) J. Eukaryot. Microbiol. , vol.46 , pp. 327-338
    • Turner, S.1    Pryer, K.M.2    Miao, V.P.W.3    Palmer, J.D.4
  • 186
    • 0034538854 scopus 로고    scopus 로고
    • An updated and comprehensive rRNA phylogeny of (crown) eukaryotes based on rate-calibrated evolutionary distances
    • Van de Peer, Y., Baldauf, S. L., Doolittle, W. F., and Meyer, A. (2003). An updated and comprehensive rRNA phylogeny of (crown) eukaryotes based on rate-calibrated evolutionary distances. J. Mol. Evol. 51, 565-576.
    • (2003) J. Mol. Evol. , vol.51 , pp. 565-576
    • Van De Peer, Y.1    Baldauf, S.L.2    Doolittle, W.F.3    Meyer, A.4
  • 188
    • 0037370533 scopus 로고    scopus 로고
    • Probabilistic analysis indicates discordant gene trees in chloroplast evolution
    • Vogl, C., Badger, J., Kearney, P., Li, M., Clegg, M., and Jiang, T. (2003). Probabilistic analysis indicates discordant gene trees in chloroplast evolution. J. Mol. Evol. 56, 330-340.
    • (2003) J. Mol. Evol. , vol.56 , pp. 330-340
    • Vogl, C.1    Badger, J.2    Kearney, P.3    Li, M.4    Clegg, M.5    Jiang, T.6
  • 189
    • 0030292779 scopus 로고    scopus 로고
    • GSBF1, a seedling-specific bZIP DNA-binding protein with preference for a 'split' G-box-related element in Brassica napus RbcS promoters
    • Waldmüller, S., Müller, U., and Link, G. (1996). GSBF1, a seedling-specific bZIP DNA-binding protein with preference for a 'split' G-box-related element in Brassica napus RbcS promoters. Plant Mol. Biol. 32, 631-639.
    • (1996) Plant Mol. Biol. , vol.32 , pp. 631-639
    • Waldmüller, S.1    Müller, U.2    Link, G.3
  • 190
    • 0025831084 scopus 로고
    • The plastid genome of Cryptomonas Φ encodes and hsp 70-like protein, a histone-like protein, and an acyl carrier protein
    • Wang, S., and Liu, X.-Q. (1991). The plastid genome of Cryptomonas Φ encodes and hsp 70-like protein, a histone-like protein, and an acyl carrier protein. Proc. Natl. Acad. Sci. USA 88, 10787-10787.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 10787-10787
    • Wang, S.1    Liu, X.-Q.2
  • 191
    • 0033529190 scopus 로고    scopus 로고
    • Stability of the mitochondrial genome requires an amino-terminal domain of yeast mitochondrial RNA polymerase
    • Wang, Y., and Shadel, G. (1999). Stability of the mitochondrial genome requires an amino-terminal domain of yeast mitochondrial RNA polymerase. Proc. Natl. Acad. Sci. USA 96, 8046-8051.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8046-8051
    • Wang, Y.1    Shadel, G.2
  • 192
    • 0035827624 scopus 로고    scopus 로고
    • Dual targeting of spinach protoporphyrinogen oxidase II to mitochondria and chloroplasts by alternative use of two in-frame initiation codons
    • Watanabe, N., Che, F. S., Iwano, M., Takayama, S., Yoshida, S., and Isogai, A. (2001). Dual targeting of spinach protoporphyrinogen oxidase II to mitochondria and chloroplasts by alternative use of two in-frame initiation codons. J. Biol. Chem. 276, 20474-20481.
    • (2001) J. Biol. Chem. , vol.276 , pp. 20474-20481
    • Watanabe, N.1    Che, F.S.2    Iwano, M.3    Takayama, S.4    Yoshida, S.5    Isogai, A.6
  • 193
    • 0031148775 scopus 로고    scopus 로고
    • DNA binding and bending by a chloroplast-encoded HU-like protein overexpressed in Escherichia coli
    • Wu, H., and Liu, X.-Q. (1997). DNA binding and bending by a chloroplast-encoded HU-like protein overexpressed in Escherichia coli. Plant Mol. Biol. 34, 339-343.
    • (1997) Plant Mol. Biol. , vol.34 , pp. 339-343
    • Wu, H.1    Liu, X.-Q.2
  • 194
    • 0030221344 scopus 로고    scopus 로고
    • CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease
    • Yang, J., Schuster, G., and Stern, D. B. (1996). CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease. Plant Cell 8, 1409-1420.
    • (1996) Plant Cell , vol.8 , pp. 1409-1420
    • Yang, J.1    Schuster, G.2    Stern, D.B.3
  • 195
  • 196
    • 0029553767 scopus 로고
    • Nucleoids of pea chloroplasts: Microscopic and chemical characterization: Occurrence of histone-like proteins
    • Yurina, N. P., Belkina, G. G., Karapetyan, N. V., and Odintsova, M. S. (1995). Nucleoids of pea chloroplasts: microscopic and chemical characterization: Occurrence of histone-like proteins. Biochem. Mol. Biol. Int. 36, 145-154.
    • (1995) Biochem. Mol. Biol. Int. , vol.36 , pp. 145-154
    • Yurina, N.P.1    Belkina, G.G.2    Karapetyan, N.V.3    Odintsova, M.S.4
  • 197
    • 0029000674 scopus 로고
    • An enzyme is yeast mitochondria that catalyzes a step in branched-chain amino acid biosynthesis also functions in mitochondrial DNA stability
    • Zelenaya-Troitskaya, O., Perlman, P. S., and Butow, R. A. (1995). An enzyme is yeast mitochondria that catalyzes a step in branched-chain amino acid biosynthesis also functions in mitochondrial DNA stability. EMBO J. 14, 3268-3276.
    • (1995) EMBO J. , vol.14 , pp. 3268-3276
    • Zelenaya-Troitskaya, O.1    Perlman, P.S.2    Butow, R.A.3


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