Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

Journal of Biological Chemistry

Volumn 274, Issue 46, 1999, Pages 33105-33113

  Azam, Talukder Ali ^a,b   Ishihama, Akira ^a  

^a NATIONAL INSTITUTE OF GENETICS   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA; DNA BINDING PROTEIN;

ARTICLE; BINDING AFFINITY; DNA SEQUENCE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DNA BINDING; PROTEIN EXPRESSION; PROTEIN PURIFICATION;

BACTERIAL PROTEINS; BASE SEQUENCE; DIMERIZATION; DNA PROBES; DNA-BINDING PROTEINS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION;

EID: 0032731196     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.274.46.33105     Document Type: Article

References (75)

1. Pettijohn, D. E. (1996) in Escherichia coli and Salmonella (Neidhardt, F. C., ed) pp. 158-166, ASM, Washington, D. C.
2. Drlica, K., and Rouviere-Yaniv, J. (1987) Microbiol. Rev. 51, 301-319
3. Pruss, G. J., and Drlica, K, (1989) Cell 56, 521-523
4. Almirón, M., Link, A. J., Furlong, D., and Kolter, R. (1992) Genes Dev. 6, 2646-2654
5. Ishihama, A. (1997) in Nucleic Acids & Molecular Biology: Mechanism of Transcription (Eckstein, F., and Lilley, D. M. G., eds) Vol. 11, pp. 53-70, Springer-Verlag, Heidelberg
6. Finkel, S. E., and Johnson, R. C. (1992) Mol. Microbiol 6, 3257-3265
7. Nash, H. A. (1996) in Regulation of Gene Expression in Escherichia coli (Lin, E. E. C., and Lynch, A. S., eds) pp. 149-179, R. G. Landes Co., Austin, TX
8. Rouviere-Yaniv, J., and Yaniv, M. (1979) Cell 17, 265-274
9. Newman, E. B., and Lin, R. T. (1995) Annu. Rev. Microbiol. 49, 747-775
10. D'Ari, R., Lin, R. T., and Newman, E. B. (1993) Trends Biochem. Sci. 18, 260-263
11. Yamada, H., Muramatsu, S., and Mizuno, T. (1990) J. Biochem. (Tokyo) 108, 420-425
12. Ueguchi, C., Kakeda, M., Yamada, H., and Mizuno, T. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 1054-1058
13. Kakeda, M., Ueguchi, C., Yamada, H., and Mizuno, T. (1995) Mol. Gen. Genet. 248, 629-634
14. Wei, T., and Bernander, R. (1996) Nucleic Acids Res. 24, 1865-1872
15. Cusick, M. E., and Belfort, M. (1998) Mol. Microbiol. 28, 847-857
16. Fuller, R. S., Funnell, B. E., and Kornberg, A. (1984) Cell 38, 889-900
17. Hwang, D. S., and Kornberg, A. (1990) Cell 63, 325-331
18. Kajitani, M., Kato, A., Wada, A., Inokuchi, Y., and Ishihama, A. (1994) J. Bacteriol. 176, 531-534
19. Sutton, M. D., and Kaguni, J. M. (1997) J. Biol. Chem. 272, 23017-23024
20. Pan, C. Q., Finkel, S. E., Cramton, S. E., Feng, J-A., Sigman, D. S., and Johnson, R. C. (1996) J. Mol. Biol. 264, 675-695
21. Kajitani, M., and Ishihama, A. (1991) Nucleic Acids Res. 19, 1063-1066
22. Tanaka, K., Yamada, H., Yoshida, T., and Mizuno, T. (1991) Agric. Biol. Chem. 55, 3139-3141
23. Tanaka, H., Goshima, N., Khono, K., Kano, Y., and Imamoto, F. (1993) J. Biochem. (Tokyo) 113, 568-572
24. Nash, H. A., Robertson, C. A., Flamm, E., Weisberg, R. A., and Miller, H. I. (1987) J. Bacteriol. 169, 4124-4127
25. Ernsting, B. R., Denninger, J. W., Blumenthal, R. M., and Matthews, R. G. (1993) J. Bacteriol. 175, 7160-7169
26. Zhang, A., Derbyshire, V., Galloway Salvo, J. L., and Belfort, M. (1995) RNA 1, 783-793
27. Carey, J. (1991) Methods Enzymol. 208, 103-117
28. Zuber, F., Kotlarz, D., Rimsky, S., and Buc, H. (1994) Mol. Microbiol. 12, 231-240
29. Schaper S., and Messer, W. (1995) J. Biol. Chem. 270, 17622-17626
30. Craig, N. L., and Nash, H. A. (1984) Cell 39, 707-716
31. Oui, Y., Wang, Q., Stormo, G. D., and Calvo, J. M. (1995) J. Bacteriol. 177, 4872-4880
32. Takada, A., Wachi, M., Kaidow, A., Takamura, M., and Nagai, K. (1997) Biochem. Biophys. Res. Commun. 236, 576-579
33. Losso, M. A., Pawlik, R. T., Canonaco, M. A., and Gualerzi, C. O. (1986) Eur. J. Biochem. 155, 27-32
34. Zhang, A., Rimsky, S., Reaban, M. E., Buc, H., and Belfort, M. (1996) EMBO J. 15, 1340-1349
35. Martinez, A., and Kolter, R. (1997) J. Bacteriol. 179, 5188-5194
36. Skarstad, K., Thony, B., Hwang, D. S., and Kornberg, A. (1993) J. Biol. Chem. 268, 5365-5370
37. Ariza, R. R., Li, Z., Ringstad, N., and Demple, B. (1995) J. Bacteriol. 177, 1655-1661
38. Jair, K.-W., Yu, X., Skarstad, K., Thony, B., Fujita, N., Ishihama A., and Wolf, R. E., Jr. (1996) J. Bacteriol. 178, 2507-2513
39. Skarstad, K., and Boye, E. (1994) Biochim. Biophys. Acta 1217, 111-130
40. Messer, W., and Weigel, C. (1997) Mol. Microbiol. 24, 1-6
41. Atlung, T., Clausen, E. S., and Hansen, F. G. (1985) Mol. Gen. Genet. 200, 442-450
42. Braun, R. E., O'Day, K., and Wright, A. (1985) Cell 40, 159-169
43. Gourse, R. L., Gaal, T., Bartlett, M. S., Appleman, J. A., and Ross, W. (1996) Annu. Rev. Microbiol. 50, 645-677
44. Friedman, D. I. (1988) Cell 55, 545-554
45. Vargas, L. M., Kim, S., and Landy, A. (1989) Science 244, 1457-1461
46. Goosen, N., and van de Putte, P. (1995) Mol. Microbiol. 16, 1-7
47. Newman, E. B., D'Ari, R., and Lin, R. T. (1992) Cell 68, 617-619
48. Calvo, J. M., and Matthews, R. G. (1994) Microbiol. Rev. 58, 466-498
49. Wang, Q., and Calvo, J. M. (1993) EMBO J. 12, 2495-2501
50. Szalewska-Palasz, A., Wegrzyn, A., Blaszczak, A., Taylor, K., and Wegrzyn, G. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 4241-4246
51. Ross, W., Gosink, K. K., Salomon, J., Igarashi, K., Zou, C., Ishihama, A., Severinov, K., and Gourse, R. L. (1993) Science 262, 1407-1413
52. Giladi, H., Igarashi, K., Ishihama, A., and Oppenheim, A. B. (1992) J. Mol. Biol. 227, 985-990
53. Williams, R. M., and Rimsky, S. (1997) FEMS Microbiol. Lett. 156, 175-185
54. Higgins, C. F., Hinton, J. C., Hulton, C. S. J., Owen-Hughes, T., Pavitt, G. D., and Seirafi, A. (1990) Mol. Microbiol. 4, 2007-2012
55. Yamada, H., Ueguchi, C., Yamada, H., and Mizuno, T. (1993) Mol. Gen. Genet. 237, 113-122
56. Laurent-Winter, C., Ngo, S., Danchin, A., and Berltin, P (1997) Eur. J. Biochem. 244, 767-773
57. Pontiggia, A., Negri, A., Beltrame, M., and Bianchi, M. E. (1993) Mol. Microbiol. 7, 343-350
58. Shimizu, M., Miyake, M., Kanke, F., Matsumoto, U., and Shindo, H. (1995) Biochim. Biophys. Acta 1264, 330-336
59. Castaing, B., Zelwer, C., Laval, J., and Boiteux, S. (1995) J. Biol. Chem. 270, 10291-10296
60. Hwang, D. S., Thony, B., and Kornberg, A. (1992) J. Biol. Chem. 267, 2209-2213
61. Franze de Fernandez, M. T., Hayward, W. S., and August, J. T. (1972) J. Biol. Chem. 247, 824-831
62. Tsui, H. C. T., Leung, H.-C. E., and Winkler, M. E. (1994) Mol. Microbiol. 13, 35-49
63. Brown, L., and Elliott, T. (1996) J. Bacteriol. 178, 3763-3770
64. Muffler, A., Fischer, D., and Hengge-Aronis, R. (1996) Genes Dev. 10, 1143-1151
65. Ishihama, A. (1997) Curr. Opin. Genet. Dev. 7, 582-588
66. Ishihama, A. (1999) Genes Cells 4, 135-143
67. Lee, Y. S., and Hwang, D. S. (1997) J. Biol. Chem. 272, 83-88
68. Martin, R. G., and Rosner, J. L. (1997) J. Bacteriol. 179, 7410-7419
69. Blomfield, I. C., Kulasekara, D. H., and Eisenstein, B. I. (1997) Mol. Microbiol. 23, 705-717
70. Wang, S., Cosstick, R., Gardner, J. F., and Gumport, R. I. (1995) Biochemistry 34, 13082-13090
71. Wiese, D. E., II, Ernsting, B. R., Blumenthal, R. M., and Matthews, R. G. (1997) J. Mol. Biol. 270, 152-168
72. Wang, Q., and Calvo, J. M. (1993) J. Mol. Biol. 229, 306-318
73. Bonnefoy, E., and Rouviere-Yaniv, J. (1991) EMBO J. 10, 687-696
74. Bonnefoy, E., Takahashi, M., and Rouviere-Yaniv, J. (1994) J. Mol. Biol. 242, 116-129
75. Talukder, A. A. and Ishihama, A., J. Bacteriol, in press