-
1
-
-
0030801002
-
Gapped BLAST and PSIBLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schäffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0027412196
-
ALSCRIPT: A tool to format multiple sequence alignments
-
Barton,G.J. (1993) ALSCRIPT: a tool to format multiple sequence alignments. Protein Eng., 6, 37-40.
-
(1993)
Protein Eng.
, vol.6
, pp. 37-40
-
-
Barton, G.J.1
-
3
-
-
0028949675
-
Eukaryotic replicators and associated protein complexes
-
Bell,S.P. (1995) Eukaryotic replicators and associated protein complexes. Curr. Opin. Genet. Dev., 5, 162-167.
-
(1995)
Curr. Opin. Genet. Dev.
, vol.5
, pp. 162-167
-
-
Bell, S.P.1
-
4
-
-
0037087587
-
The origin recognition complex: From simple origins to complex functions
-
Bell,S.P. (2002) The origin recognition complex: from simple origins to complex functions. Genes Dev., 16, 659-672.
-
(2002)
Genes Dev.
, vol.16
, pp. 659-672
-
-
Bell, S.P.1
-
5
-
-
0026607331
-
ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex
-
Bell,S.P. and Stillman,B. (1992) ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex. Nature, 357, 128-134.
-
(1992)
Nature
, vol.357
, pp. 128-134
-
-
Bell, S.P.1
Stillman, B.2
-
6
-
-
0028832366
-
The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencing
-
Bell,S.P., Mitchell,J., Leber,J., Kobayashi,R. and Stillman,B. (1995) The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencing. Cell, 83, 563-568.
-
(1995)
Cell
, vol.83
, pp. 563-568
-
-
Bell, S.P.1
Mitchell, J.2
Leber, J.3
Kobayashi, R.4
Stillman, B.5
-
7
-
-
0028092214
-
Amino acid substitution during functionally constrained divergent evolution of protein sequences
-
Benner,S.A., Cohen,M.A. and Gonnet,G.H. (1994) Amino acid substitution during functionally constrained divergent evolution of protein sequences. Protein Eng., 7, 1323-1332.
-
(1994)
Protein Eng.
, vol.7
, pp. 1323-1332
-
-
Benner, S.A.1
Cohen, M.A.2
Gonnet, G.H.3
-
8
-
-
0034212268
-
Chromosome replication, nucleoid segregation and cell division in archaea
-
Bernander,R. (2000) Chromosome replication, nucleoid segregation and cell division in archaea. Trends Microbiol., 8, 278-283.
-
(2000)
Trends Microbiol.
, vol.8
, pp. 278-283
-
-
Bernander, R.1
-
9
-
-
0034016324
-
Analysis of the DNA-binding domain of Escherichia coli DnaA protein
-
Blaesing,F., Weigel,C., Welzeck,M. and Messer,W. (2000) Analysis of the DNA-binding domain of Escherichia coli DnaA protein. Mol. Microbiol., 36, 557-569.
-
(2000)
Mol. Microbiol.
, vol.36
, pp. 557-569
-
-
Blaesing, F.1
Weigel, C.2
Welzeck, M.3
Messer, W.4
-
10
-
-
0031030449
-
Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA
-
Bochkarev,A., Pfuetzner,R.A., Edwards,A.M. and Frappier,L. (1997) Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA. Nature, 385, 176-181.
-
(1997)
Nature
, vol.385
, pp. 176-181
-
-
Bochkarev, A.1
Pfuetzner, R.A.2
Edwards, A.M.3
Frappier, L.4
-
11
-
-
0034677361
-
The structures of HsIU and the ATP-dependent protease HsIU-HsIV
-
Bochtler,M., Hartmann,C., Song,H.K., Bourenkov,G.P., Bartunik,H.D. and Huber,R. (2000) The structures of HsIU and the ATP-dependent protease HsIU-HsIV. Nature, 403, 800-805.
-
(2000)
Nature
, vol.403
, pp. 800-805
-
-
Bochtler, M.1
Hartmann, C.2
Song, H.K.3
Bourenkov, G.P.4
Bartunik, H.D.5
Huber, R.6
-
12
-
-
0023408580
-
Cloning and characterization of dnaA(Cs), a mutation which leads to over-initiation of DNA replication in Escherichia coli K-12
-
Braun,R.E., O'Day,K. and Wright,A. (1987) Cloning and characterization of dnaA(Cs), a mutation which leads to over-initiation of DNA replication in Escherichia coli K-12. J. Bacteriol., 169, 3898-3903.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 3898-3903
-
-
Braun, R.E.1
O'Day, K.2
Wright, A.3
-
13
-
-
0029901503
-
The A184V missense mutation of the dnaA5 and dnaA46 alleles confers a defect in ATP binding and thermolability in initiation of Escherichia coli DNA replication
-
Carr,K.M. and Kaguni,J.M. (1996) The A184V missense mutation of the dnaA5 and dnaA46 alleles confers a defect in ATP binding and thermolability in initiation of Escherichia coli DNA replication. Mol. Microbiol., 20, 1307-1318.
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 1307-1318
-
-
Carr, K.M.1
Kaguni, J.M.2
-
14
-
-
0035977018
-
Stoichiometry of DnaA and DnaB protein in initiation at the Escherichia coli chromosomal origin
-
Carr,K.M. and Kaguni,J.M. (2001) Stoichiometry of DnaA and DnaB protein in initiation at the Escherichia coli chromosomal origin. J. Biol. Chem., 276, 44919-44925.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 44919-44925
-
-
Carr, K.M.1
Kaguni, J.M.2
-
16
-
-
0002583957
-
'DM': An automated procedure for phase improvement by density modification
-
Cowtan,K. (1994) 'DM': an automated procedure for phase improvement by density modification. Joint CCP4 ESF-EACBM Newslett. Protein Crystallogr., 31, 34-38.
-
(1994)
Joint CCP4 ESF-EACBM Newslett. Protein Crystallogr.
, vol.31
, pp. 34-38
-
-
Cowtan, K.1
-
17
-
-
0035111557
-
Escherichia coli DnaA protein-phospholipid interactions: In vitro and in vivo
-
Crooke,E. (2001) Escherichia coli DnaA protein-phospholipid interactions: in vitro and in vivo. Biochimie, 83, 19-23.
-
(2001)
Biochimie
, vol.83
, pp. 19-23
-
-
Crooke, E.1
-
18
-
-
0031058188
-
Maximum-likelihood heavyatom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
-
de La Fortelle,E. and Bricogne,G. (1997) Maximum-likelihood heavyatom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. Methods Enzymol., 276, 472-494.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 472-494
-
-
De La Fortelle, E.1
Bricogne, G.2
-
19
-
-
0031587829
-
Archaea and the origin(s) of DNA replication initiation
-
Edgell,D.R. and Doolittle,W.F. (1997) Archaea and the origin(s) of DNA replication initiation. Cell, 87, 995-998.
-
(1997)
Cell
, vol.87
, pp. 995-998
-
-
Edgell, D.R.1
Doolittle, W.F.2
-
20
-
-
0033213720
-
Replisome assembly at oriC, the replication origin of E.coli, reveals an explanation for initiation sites outside an origin
-
Fang,L., Davey,M.J. and O'Donnell,M. (1999) Replisome assembly at oriC, the replication origin of E.coli, reveals an explanation for initiation sites outside an origin. Mol. Cell, 4, 541-553.
-
(1999)
Mol. Cell
, vol.4
, pp. 541-553
-
-
Fang, L.1
Davey, M.J.2
O'Donnell, M.3
-
21
-
-
0023664708
-
In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome
-
Funnell,B.E., Baker,T.A. and Kornberg,A. (1987) In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome. J. Biol. Chem., 262, 10327-10334.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 10327-10334
-
-
Funnell, B.E.1
Baker, T.A.2
Kornberg, A.3
-
22
-
-
0032570678
-
Membrane-mediated release of nucleotide from an initiator of chromosomal replication, Escherichia coli DnaA, occurs with insertion of a distinct region of the protein into the lipid bilayer
-
Garner,J., Durrer,P., Kitchen,J., Brunner,J. and Crooke,E. (1998) Membrane-mediated release of nucleotide from an initiator of chromosomal replication, Escherichia coli DnaA, occurs with insertion of a distinct region of the protein into the lipid bilayer. J. Biol. Chem., 273, 5167-5173.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 5167-5173
-
-
Garner, J.1
Durrer, P.2
Kitchen, J.3
Brunner, J.4
Crooke, E.5
-
23
-
-
0028932026
-
Mutations in Escherichia coli dnaA which suppress a dnaX(Ts) polymerization mutation and are dominant when located in the chromosomal allele and recessive on plasmids
-
Gines-Candelaria,E., Blinkova,A. and Walker,J.R. (1995) Mutations in Escherichia coli dnaA which suppress a dnaX(Ts) polymerization mutation and are dominant when located in the chromosomal allele and recessive on plasmids. J. Bacteriol., 177, 705-715.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 705-715
-
-
Gines-Candelaria, E.1
Blinkova, A.2
Walker, J.R.3
-
24
-
-
0033975575
-
IHF redistributes bound initiator protein, DnaA, on supercoiled oriC of Escherichia coli
-
Grimwade,J.E., Ryan,V.T. and Leonard,A.C. (2000) IHF redistributes bound initiator protein, DnaA, on supercoiled oriC of Escherichia coli. Mol. Microbiol., 35, 835-844.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 835-844
-
-
Grimwade, J.E.1
Ryan, V.T.2
Leonard, A.C.3
-
25
-
-
0026749793
-
Cloning and nucleotide sequence determination of twelve mutant dnaA genes of Escherichia coli
-
Hansen,F.G., Koefoed,S. and Atlung,T. (1992) Cloning and nucleotide sequence determination of twelve mutant dnaA genes of Escherichia coli. Mol. Gen. Genet., 234, 14-21.
-
(1992)
Mol. Gen. Genet.
, vol.234
, pp. 14-21
-
-
Hansen, F.G.1
Koefoed, S.2
Atlung, T.3
-
26
-
-
0029785147
-
Mapping the protein universe
-
Holm,L.L. and Sander,C. (1996) Mapping the protein universe. Science, 273, 595-602.
-
(1996)
Science
, vol.273
, pp. 595-602
-
-
Holm, L.L.1
Sander, C.2
-
27
-
-
0026463867
-
Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF
-
Hwang,D.S. and Kornberg,A. (1992) Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF. J. Biol. Chem., 267, 23083-23086.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 23083-23086
-
-
Hwang, D.S.1
Kornberg, A.2
-
28
-
-
0035943342
-
Crystal structure of the processivity clamp loader γ (γ) complex of E.coli DNA polymerase III
-
Jeruzalmi,D., O'Donnell,M. and Kuriyan,J. (2001) Crystal structure of the processivity clamp loader γ (γ) complex of E.coli DNA polymerase III. Cell, 106, 429-441.
-
(2001)
Cell
, vol.106
, pp. 429-441
-
-
Jeruzalmi, D.1
O'Donnell, M.2
Kuriyan, J.3
-
29
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones,T.A., Zou,J.Y., Cowan,S.W. and Kjeldgaard,M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A, 47, 110-119.
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
30
-
-
0032787876
-
Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused
-
Kapust,R.B. and Waugh,D.S. (1999) Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused. Protein Sci., 8, 1668-1674.
-
(1999)
Protein Sci.
, vol.8
, pp. 1668-1674
-
-
Kapust, R.B.1
Waugh, D.S.2
-
31
-
-
0033543650
-
Dissecting the role of a conserved motif (the second region of homology) in the AAA family of ATPases. Site-directed mutagenesis of the ATP-dependent protease FtsH
-
Karata,K., Inagawa,T., Wilkinson,A.J., Tatsuta,T. and Ogura,T. (1999) Dissecting the role of a conserved motif (the second region of homology) in the AAA family of ATPases. Site-directed mutagenesis of the ATP-dependent protease FtsH. J. Biol. Chem., 274, 26225-26232.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 26225-26232
-
-
Karata, K.1
Inagawa, T.2
Wilkinson, A.J.3
Tatsuta, T.4
Ogura, T.5
-
32
-
-
0032504050
-
The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E.coli chromosomal replicase
-
Katayama,T., Kubota,T., Kurokawa,K., Crooke,E. and Sekimizu,K. (1998) The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E.coli chromosomal replicase. Cell, 94, 61-71.
-
(1998)
Cell
, vol.94
, pp. 61-71
-
-
Katayama, T.1
Kubota, T.2
Kurokawa, K.3
Crooke, E.4
Sekimizu, K.5
-
33
-
-
0034327485
-
The replication origin of archaea is finally revealed
-
Kelman,Z. (2000) The replication origin of archaea is finally revealed. Trends Biochem. Sci., 25, 521-523.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 521-523
-
-
Kelman, Z.1
-
34
-
-
0026717535
-
Three-dimensional structure of the β subunit of E.coli DNA polymerase III holoenzyme: A sliding DNA clamp
-
Kong,X.P., Onrust,R., O'Donnell,M. and Kuriyan,J. (1992) Three-dimensional structure of the β subunit of E.coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell, 69, 425-437.
-
(1992)
Cell
, vol.69
, pp. 425-437
-
-
Kong, X.P.1
Onrust, R.2
O'Donnell, M.3
Kuriyan, J.4
-
36
-
-
0028618183
-
Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
-
Krishna,T.S., Kong,X.P., Gary,S., Burgers,P.M. and Kuriyan,J. (1994) Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA. Cell, 79, 1233-1243.
-
(1994)
Cell
, vol.79
, pp. 1233-1243
-
-
Krishna, T.S.1
Kong, X.P.2
Gary, S.3
Burgers, P.M.4
Kuriyan, J.5
-
37
-
-
0033485526
-
Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli
-
Kurokawa,K., Nishida,S., Emoto,A., Sekimizu,K. and Katayama,T. (1999) Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli. EMBO J., 18, 6642-6652.
-
(1999)
EMBO J.
, vol.18
, pp. 6642-6652
-
-
Kurokawa, K.1
Nishida, S.2
Emoto, A.3
Sekimizu, K.4
Katayama, T.5
-
38
-
-
0000127585
-
Automated refinement of protein models
-
Lamzin,V.S. and Wilson,K.S. (1993) Automated refinement of protein models. Acta Crystallogr. D, 49, 129-147.
-
(1993)
Acta Crystallogr. D
, vol.49
, pp. 129-147
-
-
Lamzin, V.S.1
Wilson, K.S.2
-
39
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski,R.A., MacArthur,M.W., Moss,D.S. and Thornton,J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr., 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
40
-
-
0034063607
-
ATPase switches controlling DNA replication initiation
-
Lee,D.G. and Bell,S.P. (2000) ATPase switches controlling DNA replication initiation. Curr. Opin. Cell Biol., 12, 280-285.
-
(2000)
Curr. Opin. Cell Biol.
, vol.12
, pp. 280-285
-
-
Lee, D.G.1
Bell, S.P.2
-
41
-
-
0032555745
-
Crystal structure of the hexamerization domain of N-ethylmaleimide-sensitive fusion protein
-
Lenzen,C.U., Steinmann,D., Whiteheart,S.W. and Weis,W.I. (1998) Crystal structure of the hexamerization domain of N-ethylmaleimide-sensitive fusion protein. Cell, 94, 525-536.
-
(1998)
Cell
, vol.94
, pp. 525-536
-
-
Lenzen, C.U.1
Steinmann, D.2
Whiteheart, S.W.3
Weis, W.I.4
-
42
-
-
0033634866
-
Structure and function of Cdc6/Cdc18: Implications for origin recognition and checkpoint control
-
Liu,J., Smith,C.L, DeRyckere,D., DeAngelis,K., Martin,G.S. and Berger,J.M. (2000) Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control. Mol. Cell, 6, 637-648.
-
(2000)
Mol. Cell
, vol.6
, pp. 637-648
-
-
Liu, J.1
Smith, C.L.2
DeRyckere, D.3
DeAngelis, K.4
Martin, G.S.5
Berger, J.M.6
-
43
-
-
0034635464
-
Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids
-
Makise,M., Mima,S., Tsuchiya,T. and Mizushima,T. (2000) Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids. J. Biol. Chem., 275, 4513-4518.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 4513-4518
-
-
Makise, M.1
Mima, S.2
Tsuchiya, T.3
Mizushima, T.4
-
44
-
-
0035949506
-
In vivo interactions of archaeal Cdc6/Orc1 and minichromosome maintenance proteins with the replication origin
-
Matsunaga,F., Forterre,P., Ishino,Y. and Myllykallio,H. (2001) In vivo interactions of archaeal Cdc6/Orc1 and minichromosome maintenance proteins with the replication origin. Proc. Natl Acad. Sci. USA, 98, 11152-11157.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11152-11157
-
-
Matsunaga, F.1
Forterre, P.2
Ishino, Y.3
Myllykallio, H.4
-
45
-
-
0032736348
-
Functional domains of DnaA proteins
-
Messer,W. et al. (1999) Functional domains of DnaA proteins. Biochimie, 81, 819-825.
-
(1999)
Biochimie
, vol.81
, pp. 819-825
-
-
Messer, W.1
-
46
-
-
0035118496
-
Bacterial replication initiator DnaA. Rules for DnaA binding and roles of DnaA in origin unwinding and helicase loading
-
Messer,W. et al. (2001) Bacterial replication initiator DnaA. Rules for DnaA binding and roles of DnaA in origin unwinding and helicase loading. Biochimie, 83, 5-12.
-
(2001)
Biochimie
, vol.83
, pp. 5-12
-
-
Messer, W.1
-
47
-
-
0030983404
-
Negative control of DNA replication by hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli
-
Mizushima,T., Nishida,S., Kurokawa,K., Katayama,T., Miki,T. and Sekimizu,K. (1997) Negative control of DNA replication by hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli. EMBO J., 16, 3724-3730.
-
(1997)
EMBO J.
, vol.16
, pp. 3724-3730
-
-
Mizushima, T.1
Nishida, S.2
Kurokawa, K.3
Katayama, T.4
Miki, T.5
Sekimizu, K.6
-
48
-
-
0032516840
-
Site-directed mutational analysis for the ATP binding of DnaA protein. Functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo
-
Mizushima,T., Takaki,T., Kubota,T., Tsuchiya,T., Miki,T., Katayama,T. and Sekimizu,K. (1998) Site-directed mutational analysis for the ATP binding of DnaA protein. Functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo. J. Biol. Chem., 273, 20847-20851.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 20847-20851
-
-
Mizushima, T.1
Takaki, T.2
Kubota, T.3
Tsuchiya, T.4
Miki, T.5
Katayama, T.6
Sekimizu, K.7
-
49
-
-
0034705420
-
Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon
-
Myllykallio,H., Lopez,P., Lopez-Garcia,P., Heilig,R., Saurin,W., Zivanovic,Y., Philippe,H. and Forterre,P. (2000) Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon. Science, 288, 2212-2215.
-
(2000)
Science
, vol.288
, pp. 2212-2215
-
-
Myllykallio, H.1
Lopez, P.2
Lopez-Garcia, P.3
Heilig, R.4
Saurin, W.5
Zivanovic, Y.6
Philippe, H.7
Forterre, P.8
-
50
-
-
0032969563
-
AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
-
Neuwald,A.F., Aravind,L., Spouge,J.L. and Koonin,E.V. (1999) AAA+: a class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res., 9, 27-43.
-
(1999)
Genome Res.
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
51
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls,A., Sharp,K.A. and Honig,B. (1991) Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins, 11, 281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
52
-
-
0037177830
-
A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: Evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo
-
Nishida,S., Fujimitsu,K., Sekimizu,K., Ohmura,T., Ueda,T. and Katayama,T. (2002) A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo. J. Biol. Chem., 277, 14986-14995.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 14986-14995
-
-
Nishida, S.1
Fujimitsu, K.2
Sekimizu, K.3
Ohmura, T.4
Ueda, T.5
Katayama, T.6
-
53
-
-
0029948001
-
SSAP: Sequential structure alignment program for protein structure comparison
-
Orengo,C.A. and Taylor,W.R. (1996) SSAP: sequential structure alignment program for protein structure comparison. Methods Enzymol., 266, 617-635.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 617-635
-
-
Orengo, C.A.1
Taylor, W.R.2
-
54
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski,Z. and Minor,W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol., 276, 472-494.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 472-494
-
-
Otwinowski, Z.1
Minor, W.2
-
55
-
-
0024294634
-
Crystal structure of trp repressor/operator complex at atomic resolution
-
Otwinowski,Z., Schevitz,R.W., Zhang,R.G., Lawson,C.L., Joachimiak,A., Marmorstein,R.Q., Luisi,B.F. and Sigler,P.B. (1988) Crystal structure of trp repressor/operator complex at atomic resolution. Nature, 335, 321-329.
-
(1988)
Nature
, vol.335
, pp. 321-329
-
-
Otwinowski, Z.1
Schevitz, R.W.2
Zhang, R.G.3
Lawson, C.L.4
Joachimiak, A.5
Marmorstein, R.Q.6
Luisi, B.F.7
Sigler, P.B.8
-
56
-
-
0034840471
-
Atomic structure of the clamp loader small subunit from Pyrococcus furiosus
-
Oyama,T., Ishino,Y., Cann,I.K., Ishino,S. and Morikawa,K. (2001) Atomic structure of the clamp loader small subunit from Pyrococcus furiosus. Mol. Cell, 8, 455-463.
-
(2001)
Mol. Cell
, vol.8
, pp. 455-463
-
-
Oyama, T.1
Ishino, Y.2
Cann, I.K.3
Ishino, S.4
Morikawa, K.5
-
57
-
-
0035839032
-
Structure and mechanism of the RuvB Holliday junction branch migration motor
-
Putnam,C.D., Clancy,S.B., Tsuruta,H., Gonzalez,S., Wetmur,J.G. and Tainer,J.A. (2001) Structure and mechanism of the RuvB Holliday junction branch migration motor. J. Mol. Biol., 311, 297-310.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 297-310
-
-
Putnam, C.D.1
Clancy, S.B.2
Tsuruta, H.3
Gonzalez, S.4
Wetmur, J.G.5
Tainer, J.A.6
-
58
-
-
0029088758
-
Interaction of the initiator protein DnaA of Escherichia coli with its DNA target
-
Schaper,S. and Messer,W. (1995) Interaction of the initiator protein DnaA of Escherichia coli with its DNA target. J. Biol. Chem., 270, 17622-17626.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 17622-17626
-
-
Schaper, S.1
Messer, W.2
-
59
-
-
0030894736
-
Prediction of the structure of the replication initiator protein DnaA
-
Schaper,S. and Messer,W. (1997) Prediction of the structure of the replication initiator protein DnaA. Proteins, 28, 1-9.
-
(1997)
Proteins
, vol.28
, pp. 1-9
-
-
Schaper, S.1
Messer, W.2
-
60
-
-
0023904203
-
Cardiolipin activation of dnaA protein, the initiation protein of replication in Escherichia coli
-
Sekimizu,K. and Kornberg,A. (1988) Cardiolipin activation of dnaA protein, the initiation protein of replication in Escherichia coli. J. Biol. Chem., 263, 7131-7135.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 7131-7135
-
-
Sekimizu, K.1
Kornberg, A.2
-
61
-
-
0029052511
-
Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA
-
Shamoo,Y., Friedman,A.M., Parsons,M.R., Konigsberg,W.H. and Steitz,T.A. (1995) Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA. Nature, 376, 362-366.
-
(1995)
Nature
, vol.376
, pp. 362-366
-
-
Shamoo, Y.1
Friedman, A.M.2
Parsons, M.R.3
Konigsberg, W.H.4
Steitz, T.A.5
-
62
-
-
0023955263
-
Coordination of chromosome replication initiation in Escherichia coli: Effects of different dnaA alleles
-
Skarstad,K., von Meyenburg,K., Hansen,F.G. and Boye,E. (1988) Coordination of chromosome replication initiation in Escherichia coli: effects of different dnaA alleles. J. Bacteriol., 170, 852-858.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 852-858
-
-
Skarstad, K.1
Von Meyenburg, K.2
Hansen, F.G.3
Boye, E.4
-
63
-
-
0035869023
-
Mechanism of origin unwinding: Sequential binding of DnaA to double- and single-stranded DNA
-
Speck,C. and Messer,W. (2001) Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA. EMBO J., 20, 1469-1476.
-
(2001)
EMBO J.
, vol.20
, pp. 1469-1476
-
-
Speck, C.1
Messer, W.2
-
64
-
-
0030854615
-
From footprint to toeprint: A close-up of the DnaA box, the binding site for the bacterial initiator protein DnaA
-
Speck,C., Weigel,C. and Messer,W. (1997) From footprint to toeprint: a close-up of the DnaA box, the binding site for the bacterial initiator protein DnaA. Nucleic Acids Res., 25, 3242-3247.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3242-3247
-
-
Speck, C.1
Weigel, C.2
Messer, W.3
-
65
-
-
0028859388
-
Novel alleles of the Escherichia coli dnaA gene are defective in replication of pSC101 but not of oriC
-
Sutton,M.D. and Kaguni,J.M. (1995) Novel alleles of the Escherichia coli dnaA gene are defective in replication of pSC101 but not of oriC. J. Bacteriol., 177, 6657-6665.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6657-6665
-
-
Sutton, M.D.1
Kaguni, J.M.2
-
66
-
-
0031565989
-
The Escherichia coli dnaA gene: Four functional domains
-
Sutton,M.D. and Kaguni,J.M. (1997a) The Escherichia coli dnaA gene: four functional domains. J. Mol. Biol., 274, 546-561.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 546-561
-
-
Sutton, M.D.1
Kaguni, J.M.2
-
67
-
-
0030823757
-
Threonine 435 of Escherichia coli DnaA protein confers sequence-specific DNA binding activity
-
Sutton,M.D. and Kaguni,J.M. (1997b) Threonine 435 of Escherichia coli DnaA protein confers sequence-specific DNA binding activity. J. Biol. Chem., 272, 23017-23024.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 23017-23024
-
-
Sutton, M.D.1
Kaguni, J.M.2
-
68
-
-
0032545466
-
Escherichia coli DnaA protein. The N-terminal domain and loading of DnaB helicase at the E.coli chromosomal origin
-
Sutton,M.D., Carr,K.M., Vicente,M. and Kaguni,J.M. (1998) Escherichia coli DnaA protein. The N-terminal domain and loading of DnaB helicase at the E.coli chromosomal origin. J. Biol. Chem., 273, 34255-34262.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 34255-34262
-
-
Sutton, M.D.1
Carr, K.M.2
Vicente, M.3
Kaguni, J.M.4
-
69
-
-
0033119895
-
Automated structure solution for MIR and MAD
-
Terwilliger,T. and Berendzen,J. (1999) Automated structure solution for MIR and MAD. Acta Crystallogr. D, 55, 849-861.
-
(1999)
Acta Crystallogr. D
, vol.55
, pp. 849-861
-
-
Terwilliger, T.1
Berendzen, J.2
-
70
-
-
0031574072
-
The CLUSTAL-X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson,J.D., Gibson,T.J., Plewniak,F., Jeanmougin,F. and Higgins,D.G. (1997) The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
71
-
-
0035852703
-
Crystal structure of the Holliday junction migration motor protein RuvB from Thermus thermophilus HB8
-
Yamada,K., Kunishima,N., Mayanagi,K., Ohnishi,T., Nishino,T., Iwasaki,H., Shinagawa,H. and Morikawa,K. (2001) Crystal structure of the Holliday junction migration motor protein RuvB from Thermus thermophilus HB8. Proc. Natl Acad. Sci. USA, 98, 1442-1447.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 1442-1447
-
-
Yamada, K.1
Kunishima, N.2
Mayanagi, K.3
Ohnishi, T.4
Nishino, T.5
Iwasaki, H.6
Shinagawa, H.7
Morikawa, K.8
-
72
-
-
0031715606
-
Structure of the ATP-dependent oligomerization domain of N-ethylmaleimide sensitive factor complexed with ATP
-
Yu,R.C., Hanson,P.I., Jahn,R. and Brunger,A.T. (1998) Structure of the ATP-dependent oligomerization domain of N-ethylmaleimide sensitive factor complexed with ATP. Nat. Struct. Biol., 5, 803-811.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 803-811
-
-
Yu, R.C.1
Hanson, P.I.2
Jahn, R.3
Brunger, A.T.4
-
73
-
-
0034502514
-
Structure of the AAA ATPase p97
-
Zhang,X. et al. (2000) Structure of the AAA ATPase p97. Mol. Cell, 6, 1473-1484.
-
(2000)
Mol. Cell
, vol.6
, pp. 1473-1484
-
-
Zhang, X.1
-
74
-
-
0035282783
-
Mutations in DnaA protein suppress the growth arrest of acidic phospholipid-deficient Escherichia coli cells
-
Zheng,W., Li,Z., Skarstad,K. and Crooke,E. (2001) Mutations in DnaA protein suppress the growth arrest of acidic phospholipid-deficient Escherichia coli cells. EMBO J., 20, 1164-1172.
-
(2001)
EMBO J.
, vol.20
, pp. 1164-1172
-
-
Zheng, W.1
Li, Z.2
Skarstad, K.3
Crooke, E.4
|