SISEQ: Manipulation of multiple sequence and large database files for common plafforms

Bioinformatics

Volumn 16, Issue 2, 2000, Pages 180-181

  Sato, Naoki ^a  

^a SAITAMA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER PROGRAM; DATA BASE; DNA SEQUENCE; PRIORITY JOURNAL; SHORT SURVEY;

EID: 0034019062     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/16.2.180     Document Type: Short Survey

References (6)

1. Benson, D.A., Boguski, M.S., Lipman, D.J., Ostell, J., Ouellette, B.F.F., Rapp, B.A. and Wheeler, D.L. (1999) GenBank. Nucl. Acids Res., 27, 12-17.
2. Fristensky, B. (1993) Feature expressions: creating and manipulating sequence datasets. Nucl. Acids Res., 25, 5997-6003.
3. Knight, J. (1996) SeqIO package. Computer program, University of California, Davis. ftp://ftp.cs.ucdavis.edu/pub/strings/seqio. tar.gz.
4. Stoesser, G., Tuli, M.A., Lopez, R. and Sterk, P. (1999) The EMBL nucleotide sequence database. Nucl. Acids Res., 27, 18-24.
5. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res., 22, 4673-4680.
6. Walker, D.R. and Koonin, E.V. (1997) SEALS: a system for easy analysis of lots of sequences. Intell. Syst. Mol. Biol., 5, 333-339. http://www.ncbi.nlm.nih.gov/Walker/SEALS/index.html.