Control of transcription by nucleoid proteins

Current Opinion in Microbiology

Volumn 4, Issue 2, 2001, Pages 152-159

  McLeod, Sarah M ^a   Johnson, Reid C ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; RNA POLYMERASE;

BACTERIAL CHROMOSOME; DNA SEQUENCE; DNA STRUCTURE; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; REVIEW; TRANSCRIPTION REGULATION;

BACTERIA (MICROORGANISMS);

EID: 0035075425     PISSN: 13695274     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1369-5274(00)00181-8     Document Type: Review

References (49)

1. The nucleoid
2. Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival
3. The HU and IHF proteins: Accessory factors for complex protein-DNA assemblies
4. Domain organization and oligomerization among H-NS-like nucleoid-associated proteins in bacteria
5. Molecular aspects of the E. coli nucleoid protein, H-NS: A central controller of gene regulatory networks
6. H-NS: A modulator of environmentally regulated gene expression
7. Information analysis of Fis binding sites
8. Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts
9. Searching for and predicting the activity of sites for DNA binding proteins: Compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF)
10. In vitro selection of integration host factor binding sites
11. Maximal transcriptional activation by the IHF protein of Escherichia coli depends on optimal DNA bending by the activator
12. Differential binding of the Escherichia coli HU, homodimeric forms and heterodimeric form to linear, gapped and cruciform DNA
13. Multimeric self-assembly equilibria involving the histone-like protein H-NS. A thermodynamic study
14. Oligomerization of the chromatin-structuring protein H-NS
15. Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
16. The Fis protein: It's not just for DNA inversion anymore
17. Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps
18. The crystal structure of Dps, a ferritin homolog that binds and protects DNA
19. Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid
20. Global gene expression profiling in Escherichia coli K12. The effects of integration host factor
21. A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli
22. The bacterial DNA-binding protein H-NS represses ribosomal RNA transcription by trapping RNA polymerase in the initiation complex
23. Thermoregulation of Shigella and Escherichia coli EIEC pathogenicity. A temperature-dependent structural transition of DNA modulates accessibility of virF promoter to transcriptional repressor H-NS
24. Differential temperature modulation by H-NS of the fimB and fimE recombinase genes which control the orientation of the type 1 fimbrial phase switch
25. Antagonistic control of the Escherichia coli bgl promoter by FIS and CAP in vitro
26. Role of HU and DNA supercoiling in transcription repression: Specialized nucleoprotein repression complex at gal promoters in Escherichia coli
27. GaIR mutants defective in repressosome formation
28. Characterization of the negative elements involved in silencing the bgl operon of Escherichia coli: Possible roles for DNA gyrase, H-NS, and CRP-cAMP in regulation
29. How is osmotic regulation of transcription of the Escherichia coli proU operon achieved? A review and a model
30. DNA binding is not sufficient for H-NS-mediated repression of proU expression
31. The Escherichia coli nucleoid protein H-NS functions directly as a transcriptional repressor
32. Lac and lambda repressors relieve silencing of the Escherichia coli bgl promoter. Activation by alteration of a repressing nucleoprotein complex
33. The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter
34. Fis activates the RpoS-dependent stationary-phase expression of proP in Escherichia coli
35. Localization of amino acids required for Fis to function as a class II transcriptional activator at the RpoS-dependent proP P2 promoter
36. Molecular anatomy of a transcription activation patch: FIS-RNA polymerase interactions at the Escherichia coli rrnB P1 promoter
37. FIS activates sequential steps during transcription initiation at a stable RNA promoter
38. Regulation of rRNA transcription is remarkably robust: FIS compensates for altered nucleoside triphosphate sensing by mutant RNA polymerases at Escherichia coli rrn P1 promoters
39. DNA microloops and microdomains: A general mechanism for transcription activation by torsional transmission
40. The regulation of transcription initiation by integration host factor
41. Active recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida: Role of IHF and alphaCTD
42. Participation of IHF and a distant UP element in the stimulation of the phage lambda PL promoter
43. Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence
44. Suppression of FNR-dependent transcription activation at the Escherichia coli nir promoter by Fis, IHF and H-NS: Modulation of transcription initiation by a complex nucleoprotein assembly
45. Regulation of crp transcription by oscillation between distinct nucleoprotein complexes
46. Integration host factor and cyclic AMP receptor protein are required for TyrR-mediated activation of tpl in Citrobacter freundii
47. Co-activation of the RpoS-dependent proP P2 promoter by Fis and cyclic AMP receptor protein
48. Sigma factor selectivity of Escherichia coli RNA polymerase: Role for CRP, IHF and Lrp transcription factors
49. s and requires activation by cAMP-CRP