Retraction of "Structure of MsbA from Vibrio cholera: A Multidrug Resistance ABC Transporter Homolog in a Closed Conformation" [J. Mol. Biol. (2003) 330 419-430] (DOI:10.1016/S0022-2836(03)00587-4);Structure of MsbA from Vibrio cholera: A multidrug resistance ABC transporter homolog in a closed conformation

Journal of Molecular Biology

Volumn 330, Issue 2, 2003, Pages 419-430

  Chang, Geoffrey ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

Integral membrane proteins; Multidrug resistance; X ray crystallography

Indexed keywords

ABC TRANSPORTER; ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEIN; LIPID; MSBA PROTEIN; MULTIDRUG RESISTANCE PROTEIN; NUCLEOTIDE; UNCLASSIFIED DRUG;

ALPHA HELIX; ARTICLE; COMPARATIVE STUDY; ESCHERICHIA COLI; HYDROPHOBICITY; LIPID BILAYER; MULTIDRUG RESISTANCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN STRUCTURE; SEPARATION TECHNIQUE; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; VIBRIO CHOLERAE;

ESCHERICHIA COLI; VIBRIO; VIBRIO CHOLERAE;

EID: 0038799725     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2003.05.001     Document Type: Erratum

References (50)

1. Ambudkar S.V., Dey S., Hrycyna C.A., Ramachandra M., Pastan I., Gottesman M.M. Biochemical, cellular, and pharmacological aspects of the multidrug transporter. Annu. Rev. Pharmacol. Toxicol. 39:1999;361-398.
2. Sarkadi B., Price E.M., Boucher R.C., Germann U.A., Scarborough G.A. Expression of the human multidrug resistance cDNA in insect cells generates a high activity drug-stimulated membrane ATPase. J. Biol. Chem. 267:1992;4854-4858.
3. Ambudkar S.V., Lelong I.H., Zhang J., Cardarelli C.O., Gottesman M.M., Pastan I. Partial purification and reconstitution of the human multidrug-resistance pump: characterization of the drug-stimulatable ATP hydrolysis. Proc. Natl Acad. Sci. USA. 89:1992;8472-8476.
4. Saurin W., Hofnung M., Dassa E. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. J. Mol. Evol. 48:1999;22-41.
5. Dean M., Hamon Y., Chimini G. The human ATP-binding cassette (ABC) transporter superfamily. J. Lipid Res. 42:2001;1007-1017.
6. Gottesman M.M., Ambudkar S.V. Overview: ABC transporters and human disease. J. Bioenerg. Biomembr. 33:1992;453-458.
7. Higgins C.F., Gottesman M.M. Is the multidrug transporter a flippase? Trends Biochem. Sci. 17:1992;18-21.
8. Karow M., Georgopoulos C. The essential Escherichia coli msbA gene, a multicopy suppressor of null mutations in the htrB gene, is related to the universally conserved family of ATP-dependent translocators. Mol. Microbiol. 7:1993;69-79.
9. Doerrler W.T., Raetz C.R. ATPase activity of the MsbA lipid flippase of Escherichia coli. J. Biol. Chem. 277:2002;36697-36705.
10. Zhou Z., White K.A., Polissi A., Georgopoulos C., Raetz C.R. Function of Escherichia coli MsbA, an essential ABC family tranporter, in lipid A and phospholipid biosynthesis. J. Biol. Chem. 273:1998;12466-12475.
11. Doerrler W.T., Reedy M.C., Raetz C.R. An Escherichia coli mutant defective in lipid export. J. Biol. Chem. 276:2001;11461-11464.
12. McDonald M.K., Cowley S.C., Nano F.E. Temperature-sensitive lesions in the Francisella novicida valA gene cloned into an Escherichia coli msbA lpxK mutant affecting deoxycholate resistance and lipopolysaccharide assembly at the restrictive temperature. J. Bacteriol. 179:1997;7638-7643.
13. Tomii K., Kanehisa M. A comparative analysis of ABC transporters in complete microbial genomes. Genome Res. 10:1998;1048-1059.
14. Hughes A.L. Evolution of the ATP-binding-cassette transmembrane transporters of vertebrates. Mol. Biol. Evol. 11:1994;899-910.
15. Holland I.B., Blight M.A. ABC-ATPases, adaptable energy generators fuelling transmembrane movement of a variety of molecules in organisms from bacteria to humans. J. Mol. Biol. 293:1999;381-399.
16. Rosenberg M.F., Velarde G., Ford R.C., Martin C., Berridge G., Kerr I.D., et al. Repacking of the transmembrane domains of P-glycoprotein during the transport ATPase cycle. EMBO J. 20:2001;5615-5625.
17. Chami M., Steinfels E., Orelle C., Jault J.M., Di Pietro A., Rigaud J.L., Marco S.J. Three-dimensional structure by cryo-electron microscopy of YvcC, an homodimeric ATP-binding cassette transporter from Bacillus subtilis. Mol. Biol. 315:2002;1075-1085.
18. Ruth A., Stein W.D., Rose E., Roninson I.B. Coordinate changes in drug resistance and drug-induced conformational transitions in altered-function mutants of the multidrug transporter P-glycoprotein. Biochemistry. 40:2001;4332-4339.
19. Loo T.W., Clarke D.M. The packing of the transmembrane segments of human multidrug resistance P-glycoprotein is revealed by disulfide cross-linking analysis. J. Biol. Chem. 275:2000;5253-5256.
20. Hung L.W., Wang I.X., Nikaido K., Liu P.Q., Ames G.F., Kim S.H. Crystal structure of the ATP-binding subunit of an ABC transporter. Nature. 396:1998;623-624.
21. Diez J., Diederichs K., Greller G., Horlacher R., Boos W., Welte W. The crystal structure of a liganded trehalose/maltose-binding protein from the hyperthermophilic Archaeon Thermococcus litoralis at 1.85 Å J. Mol. Biol. 305:2001;905-915.
22. Karpowich N., Martsinkevich O., Millen L., Yuan Y.R., Dai P.L., MacVey K., et al. Crystal structures of the MJ1267 ATP binding cassette reveal an induced-fit effect at the ATPase active site of an ABC transporter. Structure. 9:2001;571-586.
23. Gaudet R., Wiley D.C. Structure of the ABC ATPase domain of human TAP1, the transporter associated with antigen processing. EMBO J. 20:2001;4964-4972.
24. Hopfner K.P., Karcher A., Shin D.S., Craig L., Arthur L.M., Carney J.P., Tainer J.A. Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily. Cell. 101:2000;789-800.
25. Locher K.P., Lee A.T., Rees D.C. The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism. Science. 296:2002;1091-1098.
26. Smith P.C., Karpowich N., Millen L., Moody J.E., Rosen J., Thomas P.J., Hunt J.F. ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer. Mol. Cell. 10:2002;139-149.
27. Loo T.W., Clarke D.M. Determining the dimensions of the drug-binding domain of human P-glycoprotein using thiol cross-linking compounds as molecular rulers. J. Biol. Chem. 276:2001;36877-36880.
28. Loo T.W., Clarke D.M. The transmembrane domains of the human multidrug resistance P-glycoprotein are sufficient to mediate drug binding and trafficking to the cell surface. J. Biol. Chem. 274:1999;24759-24765.
29. Hopfner K.P., Karcher A., Shin D.S., Craig L., Arthur L.M., Carney J.P., Tainer J.A. Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily. Cell. 101:2000;789-800.
30. Verdon G., Albers S.V., Dijkstra B.W., Driessen A.J.M., Thunnissen A.-M.W.H. Crystal structures of the ATPase subunit of the glucose ABC transporter from Sulfolobus colfataricus: nucleotide-free and nucleotide-bound conformations. J. Mol. Biol. 330:2003;343-358.
31. Qu Q., Sharom F.J. FRET analysis indicates that the two ATPase active sites of the P-glycoprotein multidrug transporter are closely associated. Biochemistry. 40:2001;1413-1422.
32. van Veen H.W., Margolles A., Muller M., Higgins C.F., Konings W.N. The homodimeric ATP-binding cassette transporter LmrA mediates multidrug transport by an alternating two-site (two-cylinder engine) mechanism. EMBO J. 19:2000;2503-2514.
33. Smith P.C., Karpowich N., Millen L., Moody J.E., Rosen J., Thomas P.J., Hunt J.F. ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer. Mol. Cell. 10:2002;139-149.
34. Szabo K., Welker E., Bakos E., Muller M., Roninson I., Varadi A., Sarkadi B. Drug-stimulated nucleotide trapping in the human multidrug transporter MDR1. Cooperation of the nucleotide binding domains. J. Biol. Chem. 273:1998;10132-10138.
35. Martin C., Berridge G., Mistry P., Higgins C., Charlton P., Callaghan R. Drug binding sites on P-glycoprotein are altered by ATP binding prior to nucleotide hydrolysis. Biochemistry. 39:2000;11901-11906.
36. Sauna Z.E., Smith M.M., Muller M., Ambudkar S.V. Evidence for the vectorial nature of drug (substrate)-stimulated ATP hydrolysis by human P-glycoprotein. J. Biol. Chem. 276:2001;33301-33304.
37. Davidson A. Mechanism of coupling of transport to hydrolysis in bacterial ATP-binding cassette transporters. J. Bacteriol. 184:2002;1225-1233.
38. Chang G., Roth C.B. Structure of MsbA from E. coli: a homolog of the multidrug resistance ATP binding cassette (ABC) transporters. Science. 293:2001;1793-1800.
39. Chang G., Spencer R.H., Lee A.T., Barclay M.T., Rees D.C. Structure of the MscL homolog from Mycobacterium tuberculosis: a gated mechanosensitive ion channel. Science. 282:1998;2220-2226.
40. Furey W., Swaminathan S. PHASES-95: a program package for processing and analyzing diffraction data from macromolecules. Methods Enzymol. 277:1997;590-620.
41. Sacks J.S.J. CHAIN - a crystallographic modeling program. Mol. Graph. 6:1988;224.
42. Pellegrini M., Gronbech-Jensen N., Kelly J.A., Pfluegl G.M., Yeates T.O. Highly constrained multiple-copy refinement of protein crystal structures. Proteins: Struct. Funct. Genet. 29:1997;426-432.
43. Gros P., van Gunsteren W.F., Hol W.G. Inclusion of thermal motion in crystallographic structures by restrained molecular dynamics. Science. 235:1987;1149-1152.
44. Kuriyan J., Osapay K., Burley S.K., Brunger A.T., Hendrickson W.A., Karplus M. Exploration of disorder in protein structures by X-ray restrained molecular dynamics. Proteins: Struct. Funct. Genet. 10:1991;340-358.
45. Brunger A.T., Kuriyan J., Karplus M. Crystallographic R factor refinement by molecular dynamics. Science. 235:1987;458.
46. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:1994;4673-4680.
47. Esnouf R.M. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J. Mol. Graph. 15:1997;112-113.
48. Kraulis P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24:1991;946-950.
49. Merritt E.A., Bacon D.J. Raster3D: photorealistic molecular graphics. Methods Enzymol. 1997;277.
50. Bailey S. CCP4 project. Acta Crystallog. sect. D. 50:1994;760-763.