Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast

Nucleic Acids Research

Volumn 28, Issue 8, 2000, Pages 1700-1706

  Davis, Carrie A ^a   Grate, Leslie ^a   Spingola, Marc ^a   Ares Jr , Manuel ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; FUNGAL RNA;

ALTERNATIVE RNA SPLICING; ARTICLE; FUNGAL GENETICS; GENE EXPRESSION REGULATION; INTRON; MEIOSIS; NONHUMAN; PREDICTION; PRIORITY JOURNAL; RNA SPLICING; SACCHAROMYCES CEREVISIAE;

EUKARYOTA; FUNGI; MYXOGASTRIA; SACCHAROMYCES CEREVISIAE;

EID: 0034655641     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/28.8.1700     Document Type: Article

References (36)

1. Mewes, H.W. et al. (1997) Nature, 387 (suppl.), 7-65.
2. Ainscough, R. et al. (1998) Science, 282, 2012-2018.
3. Deutsch, M. and Long, M. (1999) Nucleic Acids Res., 27, 3219-3228.
4. Kent, W.J. and Zahler, A.M. (2000) Nucleic Acids Res., 28, 91-93.
5. Ansari-Lari, M.A., Oeltjen, J.C., Schwartz, S., Zhang, Z., Muzny, D.M., Lu, J., Gorrell, J.H., Chinault, A.C., Belmont, J.W., Miller, W. and Gibbs, R.A. (1998) Genome Res., 8, 29-40.
6. Kalogeropoulos, A. (1995) Yeast, 11, 555-565.
7. Spingola, M., Grate, L., Haussler, D. and Ares, M., Jr (1999) RNA, 5, 221-234.
8. Chervitz, S.A., Hester, E.T., Ball, C.A., Dolinski, K., Dwight, S.S., Harris, M.A., Juvik, G., Malekian, A., Roberts, S., Roe, T., Scafe, C., Schroeder, M., Sherlock, G., Weng, S., Zhu, Y., Cherry, J.M. and Botstein, D. (1999) Nucleic Acids Res., 27, 74-78.
9. Hodges, P.E., McKee, A.H., Davis, B.P., Payne, W.E. and Garrels, J.I. (1999) Nucleic Acids Res., 27, 69-73.
10. Lopez, P.J. and Seraphin, B. (1999) RNA, 5, 1135-1137.
11. Ares, M., Jr, Grate, L. and Pauling, M.H. (1999) RNA, 5, 1138-1139.
12. Eng, F.J. and Warner, J.R. (1991) Cell, 65, 797-804.
13. Li, Z., Paulovich, A.G. and Woolford, J.L., Jr (1995) Mol. Cell. Biol., 15, 6454-6464.
14. Vilardell, J. and Warner, J.R. (1994) Genes Dev., 8, 211-220.
15. Vilardell, J. and Warner, J.R. (1997) Mol. Cell. Biol., 17, 1959-1965.
16. Engebrecht, J.A., Voelkel-Meiman, K. and Roeder, G.S. (1991) Cell, 66, 1257-1268.
17. Nakagawa, J. and Ogawa, H. (1999) EMBOJ., 18, 5714-5723.
18. Nandabalan, K., Price, L. and Roeder, G.S. (1993) Cell, 73, 407-415.
19. Padmore, R., Cao, L. and Kleckner, N. (1991) Cell, 66, 1239-1256.
20. Ares, M., Jr and Igel, A.H. (1990) Genes Dev., 4, 2132-2145.
21. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. (1987) Current Protocols in Molecular Biology. Greene/John Wiley and Sons, New York, NY.
22. Chu, S., DeRisi, J., Eisen, M., Mulholland, J., Botstein, D., Brown, P.O. and Herskowitz, I. (1998) Science, 282, 699-705.
23. Gerber, A.P. and Keller, W. (1999) Science, 286, 1146-1149.
24. Vilela, C., Ramirez, C.V., Linz, B., Rodrigues-Pousada, C. and McCarthy, J.E. (1999) EMBO J., 18, 3139-3152.
25. Polymenis, M. and Schmidt, E.V. (1997) Genes Dev., 11, 2522-2531.
26. Hinnebusch, A.G. (1994) Trends Biochem. Sci., 19, 409-414.
27. Nandabalan, K. and Roeder, G.S. (1995) Mol. Cell. Biol., 15, 1953-1960.
28. Bishop, D.K., Park, D., Xu, L. and Kleckner, N. (1992) Cell, 69, 439-456.
29. Malone, R.E., Pittman, D.L. and Nau, J.J. (1997) Mol. Gen. Genet., 255, 410-419.
30. Menees, T.M., Ross-MacDonald, P.B. and Roeder, G.S. (1992) Mol. Cell Biol., 12, 1340-1351.
31. Leu, J.Y. and Roeder, G.S. (1999) Mol. Cell Biol., 19, 7933-7943.
32. Ner, S.S. and Smith, M. (1989) Mol. Cell. Biol., 9, 4613-4620.
33. Habara, Y., Urushiyama, S., Tani, T. and Ohshima, Y. (1998) Nucleic Acids Res., 26, 5662-5669.
34. Santos-Rosa, H., Moreno, H., Simos, G., Segref, A., Fahrenkrog, B., Pante, N. and Hurt, E. (1998) Mol. Cell Biol., 18, 6826-6838.
35. Kadowaki, T., Hitomi, M., Chen, S. and Tartakoff, A.M. (1994) Mol. Biol. Cell, 5, 1253-1263.
36. Gelfand, M.S., Dubchak, I., Dralyuk, I. and Zorn, M.(1999) Nucleic Acids Res., 27, 301-302.