The complexity of chromatin remodeling and its links to cancer

Biochimica et Biophysica Acta - Reviews on Cancer

Volumn 1603, Issue 1, 2002, Pages 19-29

  Neely, Kristen E ^a   Workman, Jerry L ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

ATP dependent chromatin remodeling; Cancer; CHD; ISWI; SWI SNF

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; PROTEIN ACF; PROTEIN BRG1; PROTEIN CHD; PROTEIN CHD1; PROTEIN CHRAC; PROTEIN DERIVATIVE; PROTEIN INI1; PROTEIN INO80; PROTEIN ISWI; PROTEIN MI 2; PROTEIN NRD; PROTEIN NURD; PROTEIN NURF; PROTEIN RSC; PROTEIN SNF2; PROTEIN SNF5; PROTEIN SUBUNIT; PROTEIN SWI2; TUMOR SUPPRESSOR PROTEIN; UNCLASSIFIED DRUG;

CANCER; CANCER GROWTH; CARCINOGENESIS; CELL GROWTH; CHROMATIN; COMPLEX FORMATION; DROSOPHILA; FLY; GENE CONTROL; GENE REPRESSION; HUMAN; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; REVIEW; SEQUENCE HOMOLOGY; TRANSCRIPTION REGULATION; TUMOR SUPPRESSOR GENE; YEAST;

ADENOSINE TRIPHOSPHATASES; ANIMALS; CHROMATIN; DNA HELICASES; DNA-BINDING PROTEINS; DROSOPHILA; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION; HUMANS; NUCLEAR PROTEINS; ONCOGENE PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS; TUMOR SUPPRESSOR PROTEINS; XENOPUS;

EID: 0037010187     PISSN: 0304419X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0304-419X(02)00067-7     Document Type: Review

References (151)

1. Berger S.L. Oncogene. 20:2001;3007-3013.
2. Roth S.Y., Denu J.M., Allis C.D. Annu. Rev. Biochem. 70:2001;81-120.
3. Shen X., Mizuguchi G., Hamiche A., Wu C. Nature. 406:2000;541-544.
4. Phelan M.L., Sif S., Narlikar G.J., Kingston R.E. Mol. Cell. 3:1999;247-253.
5. Kwon H., Imbalzano A.N., Khavari P.A., Kingston R.E., Green M.R. Nature. 370:1994;477-481.
6. Du J., Nasir I., Benton B.K., Kladde M.P., Laurent B.C. Genetics. 150:1998;987-1005.
7. Côté J., Quinn J., Workman J.L., Peterson C.L. Science. 265:1994;53-60.
8. Cairns B.R., Lorch Y., Li Y., Zhang M., Lacomis L., Erdjument-Bromage H., Tempst P., Du J., Laurent B., Kornberg R.D. Cell. 87:1996;1249-1260.
9. Workman J.L., Kingston R.E. Annu. Rev. Biochem. 67:1998;545-579.
10. Elfring L.K., Daniel C., Papoulas O., Deuring R., Sarte M., Moseley S., Beek S.J., Waldrip W.R., Daubresse G., DePace A., Kennison J.A., Tamkun J.W. Genetics. 148:1998;251-265.
11. Laurent B.C., Treich I., Carlson M. Genes Dev. 7:1993;583-591.
12. Breeden L., Nasmyth K. Cell. 48:1987;389-397.
13. Neigeborn L., Carlson M. Genetics. 108:1984;845-858.
14. Stern M.J., Jensen R., Herskowitz I. J. Mol. Biol. 178:1984;853-868.
15. Sternberg P.W., Stern M.J., Clark I., Herskowitz I. Cell. 48:1987;567-577.
16. Recht J., Osley M.A. EMBO J. 18:1999;229-240.
17. Kruger W., Herskowitz I. Mol. Cell. Biol. 11:1991;4135-4146.
18. Kruger W., Peterson C.L., Sil A., Coburn C., Arents G., Moudrianakis E.N., Herskowitz I. Genes Dev. 9:1995;2770-2779.
19. Treich I., Cairns B.R., de los Santos T., Brewster E., Carlson M. Mol. Cell. Biol. 15:1995;4240-4248.
20. Cairns B.R., Henry N.L., Kornberg R.D. Mol. Cell. Biol. 16:1996;3308-3316.
21. Cairns B.R., Kim Y.-J., Sayre M.H., Laurent B.C., Kornberg R.D. Proc. Natl. Acad. Sci. U.S.A. 91:1994;1950-1954.
22. Cairns B.R., Erdjument-Bromage H., Tempst P., Winston F., Kornberg R.D. Mol. Cell. 2:1998;639-651.
23. Peterson C.L., Zhao Y., Chait B.T. J. Biol. Chem. 273:1998;23641-23644.
24. Cairns B.R., Levinson R.S., Yamamoto K.R., Kornberg R.D. Genes Dev. 10:1996;2131-2144.
25. Côté J., Peterson C.L., Workman J.L. Proc. Natl. Acad. Sci. U.S.A. 95:1998;4947-4952.
26. Quinn J., Fyrberg A.M., Ganster R.W., Schmidt M.C., Peterson C.L. Nature. 379:1996;844-847.
27. Bazett-Jones D.P., Côté J., Landel C.C., Peterson C.L., Workman J.L. Mol. Cell. Biol. 19:1999;1470-1478.
28. Burns L.G., Peterson C.L. Mol. Cell. Biol. 17:1997;4811-4819.
29. Logie C., Peterson C.L. EMBO J. 16:1997;6772-6782.
30. Utley R.T., Côté J., Owen-Hughes T., Workman J.L. J. Biol. Chem. 272:1997;12642-12649.
31. Owen-Hughes T., Utley R.T., Côté J., Peterson C.L., Workman J.L. Science. 273:1996;513-516.
32. Whitehouse I., Flaus A., Cairns B.R., White M.F., Workman J.L., Owen-Hughes T. Nature. 400:1999;784-787.
33. Gavin I., Horn P.J., Peterson C.L. Mol. Cell. 7:2001;97-104.
34. Havas K., Flaus A., Phelan M., Kingston R., Wade P.A., Lilley D.M.J., Owen-Hughes T. Cell. 103:2000;1133-1142.
35. Sudarsanam P., Iyer V.R., Brown P.O., Winston F. Proc. Natl. Acad. Sci. U.S.A. 97:2000;3364-3369.
36. Holstege F.C.P., Jennings E.G., Wyrick J.J., Lee T.I., Hengartner C.J., Green M.R., Golub T.R., Lander E.S., Young R.A. Cell. 95:1998;717-728.
37. Hassan A.H., Neely K.E., Workman J.L. Cell. 104:2001;817-827.
38. Neely K.E., Hassan A.H., Wallberg A.E., Steger D.J., Cairns B.R., Wright A.P.H., Workman J.L. Mol. Cell. 4:1999;649-655.
39. Natarajan K., Jackson B.M., Zhou H., Winston F., Hinnebusch A.G. Mol. Cell. 4:1999;657-664.
40. Yudkovsky N., Logie C., Hahn S., Peterson C.L. Genes Dev. 13:1999;2369-2374.
41. Dimova D., Nackerdien Z., Furgeson S., Eguchi S., Osley M.A. Mol. Cell. 4:1999;75-83.
42. Cao Y., Cairns B.R., Kornberg R.D., Laurent B.C. Mol. Cell. Biol. 17:1997;3323-3334.
43. Angus-Hill M.L., Schlichter A., Roberts D., Erdjument-Bromage H., Tempst P., Cairns B.R. Mol. Cell. 7:2001;741-751.
44. Cairns B.R., Schlichter A., Erdjument-Bromage H., Tempst P., Kornberg R.D., Winston F. Mol. Cell. 4:1999;715-723.
45. Lorch Y., Zhang M., Kornberg R.D. Cell. 96:1999;389-392.
46. Lorch Y., Cairns B.R., Zhang M., Kornberg R.D. Cell. 94:1998;29-34.
47. Tamkun J.W., Deuring R., Scott M.P., Kissinger M., Pattatucci A.M., Kaufman T.C., Kennison J.A. Cell. 68:1992;561-572.
48. Papoulas O., Beek S.J., Moseley S.L., McCallum C.M., Sarte M., Shearn A., Tamkun J.W. Development. 125:1998;3955-3966.
49. Dingwall A.K., Beek S.J., McCallum C.M., Tamkun J.W., Kalpana G.V., Goff S.P., Scott M.P. Mol. Biol. Cell. 6:1995;777-791.
50. Collins R.T., Furukawa T., Tanese N., Treisman J.E. EMBO J. 18:1999;7029-7040.
51. Crosby M.A., Miller C., Alon T., Watson K.L., Verrijzer C.P., Goldman-Levi R., Zak N.B. Mol. Cell. Biol. 19:1999;1159-1170.
52. Kal A.J., Mahmoudi T., Zak N.B., Verrijzer C.P. Genes Dev. 14:2000;1058-1071.
53. Treich I., Carlson M. Mol. Cell. Biol. 17:1997;1768-1775.
54. Collins R.T., Treisman J.E. Genes Dev. 14:2000;3140-3152.
55. Vázquez M., Moore L., Kennison J.A. Development. 126:1999;733-742.
56. Papoulas O., Daubresse G., Armstrong J.A., Lin J., Scott M.P., Tamkun J.W. Proc. Natl. Acad. Sci. U.S.A. 2001;98.
57. Khavari P.A., Peterson C.L., Tamkun J.W., Mendel D.B., Crabtree G.R. Nature. 366:1993;170-174.
58. Wang W., Côté J., Xue Y., Zhou S., Khavari P.A., Biggar S.R., Muchardt C., Kalpana G.V., Goff S.P., Yaniv M., Workman J.L., Crabtree G.R. EMBO J. 15:1996;5370-5382.
59. Wang W., Xue Y., Zhou S., Kuo A., Cairns B.R., Crabtree G.R. Genes Dev. 10:1996;2117-2130.
60. Xue Y., Canman J.C., Lee C.S., Nie Z., Yang D., Moreno G.T., Young M.K., Salmon E.D., Wang W. Proc. Natl. Acad. Sci. U.S.A. 97:2000;13015-13020.
61. Sung Y.H., Choi E.Y., Kwon H. Mol. Cell. 11:2001;75-81.
62. Zhao K., Wang W., Rando O.J., Xue Y., Swiderek K., Kuo A., Crabtree G.R. Cell. 95:1998;625-636.
63. Reyes J.C., Muchardt C., Yaniv M. J. Cell Biol. 137:1997;263-274.
64. Armstrong J.A., Bieker J.J., Emerson B.M. Cell. 95:1998;93-104.
65. Sif S., Saurin A.J., Imbalzano A.N., Kingston R.E. Genes Dev. 15:2001;603-618.
66. Underhill C., Qutob M.S., Yee S.-P., Torchia J. J. Biol. Chem. 275:2000;40463-40470.
67. Imbalzano A.N., Schnitzler G.R., Kingston R.E. J. Biol. Chem. 271:1996;20726-20733.
68. Schnitzler G., Sif S., Kingston R.E. Cell. 94:1998;17-27.
69. Phelan M.L., Schnitzler G.R., Kingston R.E. Mol. Cell. Biol. 20:2000;6380-6389.
70. Georgel P.T., Tsukiyama T., Wu C. EMBO J. 16:1997;4717-4726.
71. Guyon J.R., Narlikar G.J., Sif S., Kingston R.E. Mol. Cell. Biol. 19:1999;2088-2097.
72. Clapier C.R., Längst G., Corona D.F.V., Becker P.B., Nightingale K.P. Mol. Cell. Biol. 21:2001;875-883.
73. Kadam S., McAlpine G.S., Phelan M.L., Kingston R.E., Jones K.A., Emerson B.M. Genes Dev. 14:2000;2441-2451.
74. Lee C.-H., Murphy M.R., Lee J.-S., Chung J.H. Proc. Natl. Acad. Sci. U.S.A. 96:1999;12311-12315.
75. Kowenz-Leutz E., Leutz A. Mol. Cell. 4:1999;735-743.
76. Sullivan E.K., Weirich C.S., Guyon J.R., Sif S., Kingston R.E. Mol. Cell. Biol. 21:2001;5826-5837.
77. Fryer C.J., Archer T.K. Nature. 393:1998;88-91.
78. Nie Z., Xue Y., Yang D., Zhou S., Deroo B.J., Archer T.K., Wang W. Mol. Cell. Biol. 20:2000;8879-8888.
79. Wallberg A.E., Neely K.E., Hassan A.H., Gustafsson J.-Å., Workman J.L., Wright A.P.H. Mol. Cell. Biol. 20:2000;2004-2013.
80. Yoshinaga S.K., Peterson C.L., Herskowitz I., Yamamoto K.R. Science. 258:1992;1598-1604.
81. Shanahan F., Seghezzi W., Parry D., Mahony D., Lees E. Mol. Cell. Biol. 19:1999;1460-1469.
82. Zhang H.S., Gavin M., Dahiya A., Postigo A.A., Ma D., Luo R.X., Harbour J.W., Dean D.C. Cell. 101:2000;79-89.
83. Bochar D.A., Wang L., Beniya H., Kinev A., Xue Y., Lane W.S., Wang W., Kashanchi F., Shiekhattar R. Cell. 102:2000;257-265.
84. Dunaief J.L., Strober B.E., Guha S., Khavari P.A., Ålin K., Luban J., Begemann M., Crabtree G.R., Goff S.P. Cell. 79:1994;119-130.
85. Strober B., Dunaief J., Guha S., Goff S. Mol. Cell. Biol. 16:1996;1576-1583.
86. Muchardt C., Reyes J.C., Bourachot B., Legouy E., Yaniv M. EMBO J. 15:1996;3394-3402.
87. Sif S., Stukenberg P.T., Kirschner M.W., Kingston R.E. Genes Dev. 12:1998;2842-2851.
88. Aasland R., Stewart A.F., Gibson T. Trends Biochem. Sci. 21:1996;87-88.
89. Corona D.F.V., Längst G., Ferrari S., Tamkun J.W., Becker P.B. Mol. Cell. 3:1999;239-245.
90. Deuring R., Fanti L., Armstrong J.A., Sarte M., Papoulas O., Prestel M., Dabresse G., Verardo M., Moseley S.L., Berlocco M., Tsukiyama T., Wu C., Pimpinelli S., Tamkun J.W. Mol. Cell. 5:2000;355-365.
91. Ito T., Bulger M., Pazin M.J., Kobayashi R., Kadonaga J.T. Cell. 90:1997;145-155.
92. Tsukiyama T., Daniel C., Tamkun J., Wu C. Cell. 83:1995;1021-1026.
93. Tsukiyama T., Wu C. Cell. 83:1995;1011-1020.
94. Varga-Weisz P.D., Wilm M., Bonte E., Dumas K., Mann M., Becker P.B. Nature. 388:1997;598-602.
95. Gdula D.A., Sandaltzopoulos R., Tsukiyama T., Ossipow V., Wu C. Genes Dev. 12:1998;3206-3216.
96. Eberharter A., Ferrari S., Längst G., Straub T., Imhof A., Varga-Weisz P., Wilm M., Becker P.B. EMBO J. 20:2001;3781-3788.
97. Corona D.F.V., Eberharter A., Budde A., Deuring R., Ferrari S., Varga-Weisz P., Wilm M., Tamkun J., Becker P.B. EMBO J. 19:2000;3049-3059.
98. Hamiche A., Sandaltzopoulos R., Gdula D.A., Wu C. Cell. 97:1999;833-842.
99. Längst G., Bonte E.J., Corona D.F.V., Becker P.B. Cell. 97:1999;843-852.
100. Ito T., Levenstein M.E., Fyodorov D.V., Kutach A.K., Kobayashi R., Kadonaga J.T. Genes Dev. 13:1999;1529-1539.
101. Lu X., Meng X., Morris C.A., Keating M.T. Genomics. 54:1998;241-249.
102. Gelbert M.E., Rechsteiner T., Richmond T.J., Tsukiyama T. Mol. Cell. Biol. 21:2001;2098-2106.
103. Tsukiyama T., Palmer J., Landel C.C., Shiloach J., Wu C. Genes Dev. 13:1999;686-697.
104. Goldmark J.P., Fazzio T.G., Estep P.W., Church G.M., Tsukiyama T. Cell. 103:2000;423-433.
105. Trachtulcová P., Janatová I., Kohlwein S.D., Hasek J. Yeast. 16:2000;35-47.
106. LeRoy G., Orphanides G., Lane W.S., Reinberg D. Science. 282:1998;1900-1904.
107. Bochar D.A., Savard J., Wang W., Lafleur D.W., Moore P., Côté J., Shiekhattar R. Proc. Natl. Acad. Sci. U.S.A. 97:2000;1039-1043.
108. LeRoy G., Loyola A., Lane W.S., Reinberg D. J. Biol. Chem. 275:2000;14787-14790.
109. Poot R.A., Dellaire G., Hülsmann B.B., Grimaldi M.A., Corona D.F.V., Becker P.B., Bickmore W.A., Varga-Weisz P.D. EMBO J. 19:2000;3377-3387.
110. Nakayama J., Rice J.C., Strahl B.D., Allis C.D., Grewal S.I. Science. 292:2001;110-113.
111. Lachner M., O'Carroll D., Rea S., Mechtler K., Jenuwein T. Nature. 410:2001;116-120.
112. Bannister A.J., Zegarman P., Partridge J.F., Miska E.A., Thomas J.O., Allshire R.C., Kouzarides T. Nature. 410:2001;120-124.
113. Akhtar A., Zink D., Becker P. Nature. 407:2000;405-409.
114. Wang G., Ma A., Chow C.-M., Horsley D., Brown N.R., Cowell I.G., Singh P.B. Mol. Cell. Biol. 20:2000;6970-6983.
115. Tran H.G., Steger D.J., Iyer V.R., Johnson A.D. EMBO J. 19:2000;2323-2331.
116. Zhang Y., LeRoy G., Seelig H.-P., Lane W.S., Reinberg D. Cell. 95:1998;279-289.
117. Tong J.K., Hassig C.A., Schnitzler G.R., Kingston R.E., Schreiber S.L. Nature. 395:1998;917-921.
118. Xue Y., Wong J., Moreno G.T., Young M.K., Côté J., Wang W. Mol. Cell. 2:1998;851-861.
119. Wang H.-B., Zhang Y. Nucleic Acids Res. 29:2001;2517-2521.
120. Zhang Y., Ng H.-H., Erdjument-Bromage H., Tempst P., Bird A., Reinberg D. Genes Dev. 13:1999;1924-1935.
121. Wade P.A., Gegonne A., Jones P.L., Ballestar E., Aubry F., Wolffe A.P. Nat. Genet. 23:1999;62-66.
122. Kehle J., Beuchle D., Treuheit S., Christen B., Kennison J.A., Bienz M., Muller J. Science. 282:1998;1897-1900.
123. Kim J., Sif S., Jones B., Jackson A., Koipally J., Heller E., Winandy S., Viel A., Sawyer A., Ikeda T., Kingston R., Georgopoulos K. Immunity. 10:1999;345-355.
124. Feng Q., Zhang Y. Genes Dev. 15:2001;827-832.
125. Jones P.L., Veenstra G.C., Wade P.A., Vermaak D., Kass S.U., Landsberger N., Strouboulis J., Wolffe A.P. Nat. Genet. 19:1998;187-191.
126. Nan X., Ng H.-H., Johnson C.A., Laherty C.D., Turner B.M., Eisenman R.N., Bird A. Nature. 393:1998;386-389.
127. Ng H.-H., Zhang Y., Hendrich B., Johnson C.A., Turner B.M., Erdjument-Bromage H., Tempst P., Reinberg D., Bird A. Nat. Genet. 23:1999;58-61.
128. Wade P.A., Jones P.L., Vermaak D., Wolffe A.P. Curr. Biol. 8:1998;843-846.
129. Brehm A., Längst G., Kehle J., Clapier C.R., Imhof A., Eberharter A., Müller J., Becker P.B. EMBO J. 19:2000;4332-4341.
130. Muchardt C., Sardet C., Bourachot B., Onufryk C., Yaniv M. Nucleic Acids Res. 23:1995;1127-1132.
131. Kalpana G.V., Marmon S., Wang W., Crabtree G.R., Goff S.P. Science. 266:1994;2002-2006.
132. Versteege I., Sévenet N., Lange J., Rousseau-Merck M.-F., Ambros P., Handgretinger R., Aurias A., Delattre O. Nature. 394:1998;203-206.
133. DeCristofaro M.F., Betz B.L., Wang W., Weissman B.E. Oncogene. 18:1999;7559-7565.
134. DeCristofaro M.F., Betz B.L., Rorie C.J., Reisman D.N., Wang W., Weissman B.E. J. Cell. Physiol. 186:2001;136-145.
135. Biegel J.A., Fogelgren B., Zhou J.-Y., James C.D., Janss A.J., Allen J.C., Zagzag D., Raffel C., Rorke L.B. Clin. Cancer Res. 6:2000;2759-2763.
136. Sévenet N., Lellouch-Tubiana A., Schofield D., Hoang-Xuan K., Gessler M., Birnbaum D., Jeanpierre C., Jouvet A., Delattre O. Hum. Mol. Genet. 8:1999;2359-2368.
137. Sévenet N., Sheridan E., Amram D., Schneider P., Handgretinger R., Delattre O. Am. J. Hum. Genet. 65:1999;1342-1348.
138. Taylor M.D., Gokgoz N., Andrulis I.L., Mainprize T.G., Drake J.M., Rutka J.T. Am. J. Hum. Genet. 66:2000;1403-1406.
139. Biegel J.A., Zhou J.-Y., Rorke L.B., Stenstrom C., Wainwright L.M., Fogelgren B. Cancer Res. 59:1999;74-79.
140. Biegel J.A., Fogelgren B., Wainwright L.M., Zhou J.-Y., Bevan H., Rorke L.B. Genes Chromosomes Cancer. 28:2000;31-37.
141. Grand F., Kulkarni S., Chase A., Goldman J.M., Gordon M., Cross N.C. Cancer Res. 59:1999;3870-3874.
142. Yuge M., Nagai H., Uchida T., Murate T., Hayashi Y., Hotta T., Saito H., Kinoshita T. Cancer Genet. Cytogenet. 122:2000;37-42.
143. Wong A.K., Shanahan F., Chen Y., Lian L., Ha P., Hendricks K., Ghaffari S., Iliev D., Penn B., Woodland A.M., Smith R., Salada G., Carillo A., Laity K., Gupte J., Swedlund B., Tavtigian S.V., Teng D.H., Lees E. Cancer Res. 60:2000;6171-6177.
144. Bultman S., Gebuhr T., Yee D., La Mantia C., Nicholson J., Gilliam A., Randazzo F., Metzger D., Chambon P., Crabtree G., Magnuson T. Mol. Cell. 6:2000;1287-1295.
145. Reyes J.C., Barra J., Muchardt C., Camus A., Babinet C., Yaniv M. EMBO J. 17:1998;6979-6991.
146. Klochendler-Yeivin A., Fiette L., Barra J., Muchardt C., Babinet C., Yaniv M. EMBO Rep. 1:2000;500-506.
147. Roberts C.W.M., Galusha S.A., McMenamin M.E., Fletcher C.D.M., Orkin S.H. Proc. Natl. Acad. Sci. U.S.A. 97:2000;13796-13800.
148. Guidi C.J., Sands A.T., Zambrowicz B.P., Turner T.K., Demers D.A., Webster W., Smith T.W., Imbalzano A.N., Jones S.N. Mol. Cell. Biol. 21:2001;3598-3603.
149. Trouche D., LeChalony C., Muchardt C., Yaniv M., Kouzarides T. Proc. Natl. Acad. Sci. U.S.A. 94:1997;11268-11273.
150. Strobeck M.W., Knudsen K.E., Fribourg A.F., DeCristofaro M.F., Weissman B.E., Imbalzano A.N., Knudsen E.S. Proc. Natl. Acad. Sci. U.S.A. 97:2000;7748-7753.
151. Strobeck M.W., Reisman D.N., Gunawardena R.W., Betz B.L., Angus S.P., Knudsen K.E., Kowalik T.F., Weissman B.E., Knudsen E.S. J. Biol. Chem. 277:2002;4782-4789.