Transcriptome analysis and crop improvement (a review)

Biological Research

Volumn 34, Issue 3-4, 2001, Pages 153-164

  Dunwell, Jim M ^a   Moya León, Maria A ^b   Herrera, Raul ^b  

^a UNIVERSITY OF READING   (United Kingdom)

^b UNIVERSIDAD DE TALCA   (Chile)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

CONTROLLED STUDY; CROP; DNA MODIFICATION; GENE CONSTRUCT; GENE CONTROL; GENE EXPRESSION; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; METABOLISM; NONHUMAN; REVIEW; STRESS; TECHNIQUE; TRANSGENIC PLANT;

EID: 0035167877     PISSN: 07169760     EISSN: None     Source Type: Journal    
DOI: 10.4067/S0716-97602001000300003     Document Type: Review

References (136)

1. Transgenic maize with increased mannitol content
2. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays
3. Cancer proteomics: From identification of novel markers to creation of artificial learning models for tumor classification
4. The induction of stress related factors in plants
5. Improved germination under osmotic stress of tobacco plants overexpressing a cell wall peroxidase
6. Proteome and proteomics: New technology, new concepts, and new words
7. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
8. Gene responses in bean leaves induced by herbivory and by herbivore-induced volatiles
9. Decision analytics software solutions for proteomics analysis
10. Antisense suppression of a potato alpha-SNAP homologue leads to alterations in cellular development and assimilate distribution
11. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development
12. Transgenic approaches to increase dehydration stress tolerance in plants
13. High expression level of a gene coding for a chloroplastic amino acid selective channel protein is correlated to cold acclimation in cereals
14. Proteomics: New perspectives, new biomedical opportunities
15. Towards the production of salt tolerant crops
16. Differential expression of the 1-aminocyclopropane-1-carboxylate oxidase gene family of tomato
17. Cloning, expression, and molecular characterization of a small pea gene family regulated by low levels of ultraviolet B radiation and other stresses
18. Monsanto makes rice genome public
19. The human transcriptome map: Clustering of highly expressed genes in chromosomal domains
20. Generation of longer cDNA fragments from serial analysis of gene expression tags for gene identification
21. Signal transduction networks and the biology of plant cells
22. Genomic approaches to plant stress tolerance
23. Rice genome. Syngenta finishes, consortium goes on
24. Plants ecopically expressing the iron-binding protein, ferritin, are tolerant to oxidative damage and pathogens
25. Differential gene expression in Arabidopsis monitored using cDNA arrays
26. Exploring the metabolic and genetic control of gene expression on a genomic scale
27. Commercial sector scores success with whole rice genome
28. Turf grass molecular genetic improvement for abiotic/edaphic stress resistance
29. Transgenic Crops: Next generation, or an example of 2020 vision
30. Transgenic approaches to modifying quality traits
31. Crops genomics: Progress and prospects
32. Microbial relatives of the seed storage proteins of higher plants: Conservation of structure, and diversification of function during evolution of the cupin superfamily
33. cDNA-AFLP reveals a striking overlap in race specific resistance and wound response gene expression profiles
34. Proteome analysis
35. Sequencing the rice genome
36. A process for increasing plant growth and yield and modifying cellulose production in plants
37. Expression analysis of a high affinity nitrate transporter isolated from Arabidopsis thaliana by differential display
38. Massively parallel genomics
39. DNA chips: Promising toys have become powerful tools
40. The yeast HAL1 gene improves salt tolerance of transgenic tomato
41. Regulating metabolism by modifying the level of trehalose-6-phosphate
42. Regulating metabolism by modifying the level of trehalose-6-phosphate by inhibiting endogenous trehalase levels
43. Cold tolerance in plants
44. Amplified restriction fragment length polymorphism based mRNA finger restriction enzyme that recognizes a 4-bp sequence
45. Plant cellular and molecular responses to high salinity
46. Enhanced tolerance to salt stress in transgenic rice that overexpresses chloroplast glutamine synthetase
47. Genetic engineering of glycinebetaine production toward enhancing stress tolerance in plants: Metabolic limitations
48. Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis
49. Improving plant drought, salt and freezing tolerance by gene transfer of a single stress-inducible transcription factor
50. DNA microarrays for studies of higher plants and other photosynthetic organisms
51. Identification of rice blast fungal elicitor responsive genes by differential display analysis
52. Separation and characterization of proteins from green and etiolated shoots of rice (Oryza sativa L.): Towards a rice proteome
53. Identification by large scale screening of phytochrome regulated genes in etiolated seedlings of Arabidopsis using a fluorescent differential display technique
54. Method for producing transgenic cucumber that produces high level of superoxide dismutase
55. A public database for gene expression in human cancers
56. Comparative differential RNA display analysis of arbuscular mycorrhiza in Pisum sativum wild type and a mutant defective in late stage development
57. Expression profile viewer (ExPro View): A software tool for transcriptome analysis
58. SAGEmap: A public gene expression resource
59. Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
60. From the analysis of protein complexes to proteome wide linkage maps
61. Differential Display of eukaryotic messenger RNA by means of the polymerase chain reaction
62. DNA encoding mannose 6-phosphate reductase and recombinants produced therefrom
63. Transgenic plants producing trehalose
64. The transcriptome of Arabidopsis thaliana during systemic acquired resistance
65. POWERGE: Comparing statistical tests for SAGE experiments
66. eSAGE: Managing and analysing data generated with serial analysis of gene expression (SAGE)
67. Technical advance: Transcript profiling in rice (Oryza sativa L.) seedlings using serial analysis of gene expression
68. RNA fingerprinting and differential display using arbitrary primed PCR
69. Stress tolerance and delayed senescence in plants
70. A genomics approach to the comprehensive analysis of the glutathione S-transferase gene family in soybean and maize
71. A functional proteomics screen of proteases in colorectal carcinoma
72. Iron-superoxide dismutase expression in trangenic alfalfa increases winter survival without a detectable increase in photosynthetic oxidative stress tolerance
73. Metabolic modeling identifies key constraints on an engineering glycine betaine synthesis pathway in tobacco
74. AFLP-based mRNA fingerprinting Nucleic
75. Combining serial analysis of gene expression and array technologies to identify genes differentially expressed in breast cancer
76. Proteome analysis of differentially displayed proteins as a tool for the investigation of symbiosis
77. Identification of a hybrid specific expressed gene encoding novel RNA binding protein in wheat seedling leaves using differential display of mRNA
78. Metabolic engineering of plants for osmotic stress resistance
79. Proteomics to study genes and genomes
80. Identification with proteomics of novel proteins associated with the peribacteroid membrane of soybean root nodules
81. Transgenic plants tolerant of salinity stress
82. Transgenic tobacco plants expressing the bacterial levansucrase gene enhanced tolerance to osmotic stress
83. JESAM: CORBA software components to create and publish EST alignments and clusters
84. Role of farnesyltransferase in ABA regulation of guard cell anion channels and plant water loss
85. Proteomics of the chloroplast: Systematic identification and targeting analysis of lumenal and peripheral thylakoid proteins
86. Arabidopsis map kinase 4 negatively regulates systemic acquired resistance
87. The multisubunit chloroplast RNA polymerase A from mustard (Sinapis alba L.). Integration of a prokaryotic core into a larger complex with organelle-specific functions
88. Trehalose producing transgenic plants show improved growth performance under drought stress
89. Enhanced drought resistance in fructan-producing sugar beet
90. Compression wood responsive proteins in developing xylem of maritime pine (Pinus pinaster Ait.)
91. SAGE. The serial analysis of gene expression
92. A proteomic analysis of organelles from Arabidopsis thaliana
93. An efficient cDNA-AFLP-based strategy for the identification of putative pathogenicity factors from the potato cyst nematode Globodera rostochiensis
94. Heat shock protein 101 plays a crucial role in thermotolerance in Arabidopsis
95. Role of jasmonate in the rice (Oryza sativa L.) self-defense mechanism using proteome analysis
96. Metabolic engineering for stress tolerance: Installing osmoprotectant synthesis pathways
97. Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis
98. Chasing the dream: Plant EST microarrays
99. UV-induced melanoma cell lines and their potential for proteome analysis: A review
100. Analysis of the plant proteome
101. Towards Arabidopsis genome analysis: Monitoring expression profiles of 1400 genes using cDNA microarrays
102. 2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants
103. Direct evidence for anthocyanidin synthase as a 2-oxoglutarate dependent oxygenase: Molecular cloning and functional expression of cDNA from a red forma of Perilla frutescens
104. Genetic engineering of glycinebetaine synthesis in plants: Current status and applications for enhancement of stress tolerance
105. Transformation of Arabidopsis with the codA gene for choline oxidase enhances freezing tolerance of plants
106. Monitoring genome-wide expression in plants
107. Quantitative monitoring of gene expression pattern with a complementary DNA microarray
108. Polypeptides and dehydrogenases and methods of use
109. Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray
110. Stress protected transgenic plants
111. The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis
112. Improved biomass productivity and water use efficiency under water deficit conditions in transgenic wheat constitutively expressing the barley HVA1 gene
113. Developing expressed sequence tags (ESTs) from polymorphic transcript-derived fragments (TDFs) in cassava (Manihot esculenta Crantz)
114. Proteomics for genetic and physiological studies in plants
115. A recessive Arabidopsis mutant that grows photoautotrophically under salt stress shows enhanced active oxygen detoxification
116. Overproduction of Arabidopsis thaliana FeSOD confers oxidative stress tolerance to transgenic maize
117. Serial analysis of gene expression: Rapid RT-PCR analysis of unknown SAGE tags
118. The application of DNA microarrays in gene expression analysis
119. USAGE: A web-based approach towards the analysis of SAGE data. Serial Analysis of Gene Expression
120. Proteomics of the chloroplast: Experimentation and prediction
121. Analysing uncharted transcriptomes with SAGE
122. Serial analysis of gene expression
123. Characterization of the yeast transcriptome
124. AFLP: A new technique for DNA fingerprinting
125. Observations on the reproducibility and matching efficiency of two-dimensional electrophoresis gels: Consequences for comprehensive data analysis
126. Arbitrarily primed PCR fingerprinting of RNA
127. Transgenic overexpression of the transcription factor Alfin 1 enhances expression of the endogenous MsPRP2 gene in alfalfa and improves salinity tolerance of the plants
128. New molecular approaches to improving salt tolerance in crop plants
129. Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities
130. Production of water stress or salt stress tolerant transgenic cereal plants
131. Molecular cloning and biochemical characterization of a novel anthocyanin 5-O-glucosyltransferase by mRNA differential display for plant forms regarding anthocyanin
132. Genetic engineering of drought resistant potato plants by introduction of the trehalose-6-phosphate synthase (TPS1) gene from Saccharomyces cerevisiae
133. Identification and characterization of three orchid MADS-box genes of the AP1/AGL9 subfamily during floral transition
134. Identification of genes expressed during early Arabidopsis carpel development by mRNA differential display: Characterisation of ATCEL2, a novel endo-1,4-beta-D-glucanase gene
135. Genetic engineering for abiotic stress resistance in crops plants
136. Gene expression profiles in normal and cancer cells