cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles

Plant Cell

Volumn 12, Issue 6, 2000, Pages 963-977

  Durrant, Wendy E ^c   Rowland, Owen ^c   Piedras, Pedro ^a,c   Hammond Kosack, Kim E ^b,c   Jones, Jonathan D G ^c  

^a UNIVERSITY OF CÓRDOBA   (Spain)

^b Monsanto Europe NV   (Belgium)

^c JOHN INNES CENTRE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; CLONE; COMPLEMENTARY DNA; CYCLOHEXIMIDE; DIPHENYLENEIODONIUM; DISEASE RESISTANCE; GENE INDUCTION; PLANT CELL CULTURE; SEQUENCE HOMOLOGY; TOBACCO; TOMATO;

CLADOSPORIUM FULVUM;

EID: 0033948456     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.12.6.963     Document Type: Article

References (66)

1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J.H., Zhang, Z., Miller, W., and Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
2. Bachem, C.W.B., van der Hoeven, R.S., de Bruijn, S.M., Vreugdenhil, D., Zabeau, M., and Visser, R.G.F. (1996). Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development. Plant J. 9, 745-753.
3. Bachem, C.W.B., Oomen, R.J.F.J., and Visser, R.G.F. (1998). Transcript imaging with cDNA-AFLP: A step-by-step protocol. Plant Mol. Biol. Rep. 16, 157-173.
4. Baldwin, D., Crane, V., and Rice, D. (1999). A comparison of gel-based, nylon filter and microarray techniques to detect differential RNA expression in plants. Curr. Opin. Plant Biol. 2, 96-103.
5. Bassett, D.E., Jr., Eisen, M.B., and Boguski, M.S. (1999). Gene expression informatics - It's all in your mine. Nature Genet. 21, 51-55.
6. Bent, A.F. (1996). Function meets structure in the study of plant disease resistance genes. Plant Cell 8, 1757-1771.
7. Broekaert, W.F., Cammue, B.P.A., De Bolle, M.F.C., Thevissen, K., De Samblanx, G.W., and Osborn, R.W. (1997). Antimicrobial peptides from plants. Crit. Rev. Plant Sci. 16, 297-323.
8. Creelman, R.A., and Mullet, J.E. (1997). Biosynthesis and action of jasmonates in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48, 355-381.
9. Church, G.M., and Gilbert, W. (1984). Genomic sequencing. Proc. Natl. Acad. Sci. USA 81, 1991-1995.
10. De Wit, P.J.G.M., and Spikman, G. (1982). Evidence for the occurrence of race and cultivar-specific elicitors of necrosis in intercellular fluids of compatible interactions of Cladosporium fulvum and tomato. Physiol. Plant Pathol. 21, 1-11.
11. Dinesh-Kumar, S.P., and Baker, B.J. (2000). Alternatively spliced N resistance gene transcripts: Their possible role in tobacco mosaic virus resistance. Proc. Natl. Acad. Sci. USA 97, 1908-1913.
12. Dixon, R.A., and Paiva, N.L. (1995). Stress-induced phenylpropanoid metabolism. Plant Cell 7, 1085-1097.
13. Dröge-Laser, W., Kaiser, A., Lindsay, W., Halkier, B.A., Loake, G.J., Doerner, P., Dixon, R.A., and Lamb, C. (1997). Rapid stimulation of a soybean protein-serine kinase that phosphorylates a novel bZIP DMA-binding protein, G/HBF-1, during the induction of early transcription-dependent defenses. EMBO J. 16, 726-738.
14. Eisen, M.B., Spellman, P.T., Brown, P.O., and Botstein, D. (1998). Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 95, 14863-14868.
15. Fambrough, D., McClure, K., Kazlauskas, A., and Lander, E.S. (1999). Diverse signaling pathways activated by growth factor receptors induce broadly overlapping, rather than independent, sets of genes. Cell 97, 727-741.
16. Flor, H.H. (1971). Current status of the gene-for-gene concept. Annu. Rev. Phytopathol. 9, 275-296.
17. Gellatly, K.S., and Lefebvre, D.D. (1993). Identification of a cDNA clone coding for a novel calcium binding protein from potato tuber. Plant Physiol. 101, 1405-1406.
18. Gopalan, S., Wei, W., and He, S.Y. (1996). hrp gene-dependent induction of hin1: A plant gene activated rapidly by both harpins and the avrPto gene-mediated signal. Plant J. 10, 591-600.
19. Hammond-Kosack, K.E., Harrison, K., and Jones, J.D.G. (1994). Developmentally regulated cell death on expression of the fungal avirulence gene Avr9 in tomato seedlings carrying the disease resistance gene Cf-9. Proc. Natl. Acad. Sci. USA 91, 10445-10449.
20. Hammond-Kosack, K.E., Silverman, P., Raskin, I., and Jones, J.D.G. (1996). Race-specific elicitors of Cladosporium fulvum induce changes in cell morphology and the synthesis of ethylene and salicylic acid in tomato plants carrying the corresponding Cf disease resistance genes. Plant Physiol. 110, 1381-1394.
21. Hammond-Kosack, K.E., Tang, S.J., Harrison, K., and Jones, J.D.G. (1998). The tomato Cf-9 disease resistance gene functions in tobacco and potato to confer responsiveness to the fungal avirulence gene product Avr9. Plant Cell 10, 1251-1266.
22. Horvath, D.M., Huang, D.J., and Chua, N.H. (1998). Four classes of salicylate-induced tobacco genes. Mol. Plant-Microbe Interact., 11, 895-905.
23. - from the oxidative burst are essential components in triggering defense gene activation and phytoalexin synthesis in parsley. Proc. Natl. Acad. Sci. USA 94, 4800-4805.
24. Jensen, R.B., Jensen, K.L., Jespersen, H.M., and Skriver, K. (1998). Widespread occurrence of a highly conserved RING-H2 zinc finger motif in the model plant Arabidopsis thaliana. FEBS Lett. 436, 283-287.
25. Keen, N.T. (1990). Gene-for-gene complementarity in plant-pathogen interactions. Annu. Rev. Genet. 24, 447-463.
26. Kehoe, D.D., Villand, P., and Somerville, S. (1999). DNA microarrays for studies of higher plants and other photosynthetic organisms. Trends Plant Sci. 4, 38-41.
27. Koshiba, T., Ballas, N., Wong, L.M., and Theologis, A. (1995). Transcriptional regulation of Ps-laa4/S and Ps-laaG early gene-expression by indoleacetic-acid and protein-synthesis inhibitors in pea (Pisum sativum). J. Mol. Biol. 253, 396-413.
28. Knoester, M., van Loon, L.C., van den Heuvel, J., Hennig, J., Bol, J.F., and Linthorst, H.J.M. (1998). Ethylene-insensitive tobacco lacks nonhost resistance against soil-borne fungi. Proc. Natl. Acad. Sci. USA 95, 1933-1937.
29. Lamb, C., and Dixon, R.A. (1997). The oxidative burst in plant disease resistance. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48, 251-275.
30. 2 from the oxidative burst orchestrates the plant hypersensitive disease resistance response. Cell 79, 583-593.
31. Linthorst, H.J.M. (1991). Pathogenesis-related proteins in plants. Crit. Rev. Plant Sci. 10, 123-150.
32. Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., and Shinozaki, K. (1998). Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10, 1391-1406.
33. Logemann, J., Schell, J., and Willmitzer, L. (1987). Improved method for the isolation of RNA from plant-tissues. Anal. Biochem. 163, 16-20.
34. Martínez-García, M., Garcidueñas-Piña, C., and Guzmán, P. (1996). Gene isolation in Arabidopsis thaliana by conditional over-expression of cDNAs toxic to Saccharomyces cerevisiae: Identification of a novel early response zinc-finger gene. Mol. Gen. Genet. 252, 587-596.
35. McClelland, M., Mathieu-Daude, F., and Welsh, J. (1995). RNA fingerprinting and differential display using arbitrarily primed PCR. Trends Genet. 11, 242-246.
36. Ohme-Takagi, M., and Shinshi, H. (1995). Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell 7, 173-182.
37. Pawson, T., and Saxton, T.M. (1999). Signaling networks - Do all roads lead to the same genes? Cell 97, 675-678.
38. Penninckx, I.A.M.A., Thomma, B.P.H.J., Buchala, A., Métraux, J.-P., and Broekaert, W.F. (1998). Concomitant activation of jasmonate and ethylene response pathways is required for induction of a plant defensin gene in Arabidopsis. Plant Cell 10, 2103-2113.
39. Piedras, P., Hammond-Kosack, K.E., Harrison, K., and Jones, J.D.G. (1998). Rapid, Cf-9- and Avr9-dependent production of active oxygen species in tobacco suspension cultures. Mol. Plant-Microbe Interact. 11, 1155-1166.
40. Pontier, D., Godiard, L., Marco, Y., and Roby, D. (1994). hsr203J, a tobacco gene whose activation is rapid, highly localized and specific for incompatible plant/pathogen interactions. Plant J. 5, 507-521.
41. Pontier, D., Tronchet, M., Rogowsky, P., Lam, E., and Roby, D. (1998). Activation of hsr203, a plant gene expressed during incompatible plant-pathogen interactions, is correlated with programmed cell death. Mol. Plant-Microbe Interact. 11, 544-554.
42. Rancé, I., Fournier, J., and Esquerré-Tugayé, M.T. (1998). The incompatible interaction between Phytophthora parasitica var. nicotianae race 0 and tobacco is suppressed in transgenic plants expressing antisense lipoxygenase sequences. Proc. Natl. Acad. Sci. USA 95, 6554-6559.
43. Riechmann, J.L., and Meyerowitz, E.M. (1998). The AP2/EREBP family of plant transcription factors. Biol. Chem. 379, 633-646.
44. Romeis, T., Piedras, P., Zhang, S.Q., Klessig, D.F., Hirt, H., and Jones, J.D.G. (1999). Rapid Avr9- and Cf-9-dependent activation of MAP kinases in tobacco cell cultures and leaves: Convergence of resistance gene, elicitor, wound, and salicylate responses. Plant Cell 11, 273-287.
45. Romeis, T., Piedras, P., and Jones, J.D.G. (2000). Resistance gene -dependent activation of a calcium-dependent protein kinase in the plant defense response. Plant Cell 12, 803-816.
46. Rushton, P.J., and Somssich, I.E. (1998). Transcriptional control of plant genes responsive to pathogens. Curr. Opin. Plant Biol. 1, 311-315.
47. Rushton, P.J., Torres, J.T., Parniske, M., Wernert, P., Hahlbrock, K., and Somssich, E. (1996). Interaction of elicitor-induced DNA binding proteins with elicitor response elements in the promoters of parsley PR1 genes. EMBO J. 15, 5690-5700.
48. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press).
49. Sanger, F., Nicklen, S., and Coulson, A.R. (1977). DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74, 5463-5467.
50. Saurin, A.J., Borden, K.L.B., Boddy, M.N., and Freemont, P.S. (1996). Does this have a familiar RING? Trends Biochem. Sci. 21, 208-214.
51. Scheel, D. (1998). Resistance response physiology and signal transduction. Curr. Opin. Plant Biol. 1, 305-310.
52. 2+ and protein-kinase activity. Planta 187, 136-141.
53. Solano, R., Stepanova, A., Chao, Q., and Ecker, J.R. (1998). Nuclear events in ethylene signaling: A transcriptional cascade mediated by ethylene-insensitive3 and ethylene-response-factor1. Genes Dev. 12, 3703-3714.
54. Somssich, I.E., Bollmann, J., Hahlbrock, K., Kombrink, E., and Schulz, W. (1989). Differential early activation of defense-related genes in elicitor-treated parsley cells. Plant Mol. Biol. 12, 227-234.
55. Suty, L., Petitot, A.S., Lecourieux, D., Blein, J.P., and Pugin, A. (1996). Isolation of partial length cDNAs corresponding to early differentially expressed genes during elicitation of tobacco cells by cryptogein: Use of differential mRNA display. Plant Physiol. Biochem. 34, 443-451.
56. Suzuki, K., Suzuki, N., Ohme-Takagi, M., and Shinshi, H. (1998). Immediate early induction of mRNAs for ethylene-responsive transcription factors in tobacco leaf strips after cutting. Plant J. 15, 657-665.
57. Thomma, B.P.H.J., Eggermont, K., Penninckx, I.A.M.A., Mauch-Mani, B., Vogelsang, R., Cammue, B.P.A., and Broekaert, W.F. (1998). Separate jasmonate-dependent and salicylate-dependent defense-response pathways in Arabidopsis are essential for resistance to distinct microbial pathogens. Proc. Natl. Acad. Sci. USA 95, 15107-15111.
58. Van den Ackerveken, G.F.J.M., Vossen, P., and De Wit, P.J.G.M. (1993). The Avr9 race-specific elicitor of Cladosporium fulvum is processed by endogenous and plant proteases. Plant Physiol. 103, 91-96.
59. Vos, P., Hogers, R., Bleeker, M., Reijans, M., van de Lee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M., and Zabeau, M. (1995). AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407-4414.
60. Wang, L.J., and Wessler, S.R. (1998). Inefficient reinitiation is responsible for upstream open reading frame-mediated translational repression of the maize R gene. Plant Cell 10, 1733-1745.
61. Whitham, S., Dinesh-Kumar, S.P., Choi, D., Hehl, R., Corr, C., and Baker, B. (1994). The product of the tobacco mosaic virus resistance gene N: Similarity to Toll and the interleukin-1 receptor. Cell 78, 1101-1115.
62. Wubben, J.P., Lawrence, C.B., and De Wit, P.J.G.M. (1996). Differential induction of chitinase and 1,3-β-glucanase gene expression in tomato by Cladosporium fulvum and its race-specific elicitors. Physiol. Mol. Plant Pathol. 48, 105-116.
63. Yang, Y.O., Shah, J., and Klessig, D.F. (1997). Signal perception and transduction in defense responses. Genes Dev. 11, 1621-1639.
64. Zhang, S., and Klessig, D.F. (1998). Resistance gene N-mediated de novo synthesis and activation of a tobacco mitogen-activated protein kinase by tobacco mosaic virus infection. Proc. Natl. Acad. Sci. USA 95, 7433-7438.
65. Zhang, Y., Fan, W., Kinkema, M., and Dong, X. (1999). Interaction of NPR1 with basic leucine zipper protein transcription factors that bind sequences required for salicylic acid induction of the PR-1 gene. Proc. Natl. Acad. Sci. USA 96, 6523-6528.
66. Zhou, J.M., Tang, X.Y., and Martin, G.B. (1997). The Pto kinase conferring resistance to tomato bacterial speck disease interacts with proteins that bind a cis-element of pathogenesis-related genes. EMBO J. 16, 3207-3218.