Peptides and proteins in the vapor phase

Annual Review of Physical Chemistry

Volumn 51, Issue , 2000, Pages 179-207

  Jarrold, Martin F ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

Author keywords

Conformation; Electrospray; FT ICR; Helix; Hydration; Ion mobility; MALDI

Indexed keywords

PEPTIDE; PROTEIN;

CHEMISTRY; INFRARED SPECTROSCOPY; MASS SPECTROMETRY; PROTEIN SECONDARY STRUCTURE; REVIEW;

PEPTIDES; PROTEIN STRUCTURE, SECONDARY; PROTEINS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 0033654137     PISSN: 0066426X     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.physchem.51.1.179     Document Type: Article

References (164)

1. Fenn JB, Mann M, Meng CK, Wong SF, Whitehouse CM. 1989. Science 246: 64
2. Hillenkamp F, Karas M, Beavis RC, Chait BT. 1991. Anal. Chem. 63:1193A
3. Smith RD, Bruce JE, Wu QY, Lei QP. 1997. Chem. Soc. Rev. 26:191
4. Przybylski M, Glocker MO. 1996. Angew. Chem. Int. Ed. Engl. 35:806
5. Vogl T, Roth J, Sorg C, Hillenkamp F, Strupat K. 1999. J. Am. Soc. Mass Spectrom. 10:1124
6. Gao J, Wu Q, Carbeck J, Lei QP, Smith RD, Whitesides GM. 1999. Biophys. J. 76:3253
7. Chait BT, Kent SBH. 1992. Science 257: 1885
8. Kelleher NL, Senko MW, Siegel MM, McLafferty FW. 1997. J. Am. Soc. Mass Spectrom. 8:380
9. Chait BT, Wang R, Beavis RC, Kent SB. 1993. Science 262:89
10. McLuckey SA. 1992. J. Am. Soc. Mass Spectrom. 3:599
11. Paša-Tolić L, Jensen PK, Anderson GA, Lipton MS, Peden KK, et al. 1999. J. Am. Chem. Soc. 121:7949
12. Lazardis T, Archontis G, Karplus M. 1995. Adv. Protein/Chem. 47:231
13. Makhatadze GI, Privalov PL. 1995. Adv. Protein/Chem. 47:307
14. Duan Y, Kollman PA. 1998. Science 282: 740
15. MacKerell AD, Bashford D, Bellott M, Dunbrack RL, Evanseck JD, et al. 1998. J. Phys. Chem. B 102:3586
16. Beachy MD, Chasman D, Murphy RB, Halgren TA, Friesner RA. 1997. J. Am. Chem. Soc. 119:5908
17. Barber M, Bordoli RS, Sedgwick RS, Tyler AN. 1981. J. Chem. Soc. Chem. Commun. 1981:325
18. MacFarlane RD, Torgerson DF. 1976. Science 191:920
19. Posthumus MA, Kistemaker PG, Meuzelaar HLC, ten Neuver de Brauw MC. 1978. Anal. Chem. 50:985
20. Owega S, Lai EPC, Bawagan ADO. 1998. Anal. Chem. 70:2360
21. Wei J, Buriak JM, Sluzdak G. 1999. Nature 399:243
22. Dole M, Mack LL, Hines RL, Mobley RC, Ferguson LD, Alice MB. 1968. J. Chem. Phys. 49:2240
23. Iribarne JV, Thompson BA. 1976. J. Chem. Phys. 64:2287
24. Emmett MR, Caprioli RM. 1994. J. Am. Soc. Mass Spectrom. 5:605
25. Wilm MS, Mann M. 1994. Int. J. Mass Spectrom. Ion Process. 136:167
26. Muddiman DC, Null AP, Hannis JC. 1999. Rapid Commun. Mass Spectrom. 13: 1201
27. Scalf M, Westphall MS, Krause J, Kaufman SL, Smith LM. 1999. Science 283:194
28. Stephenson JL, McLuckey SA. 1998. Anal. Chem. 70:3533
29. Chen RD, Cheng XH, Mitchell DW, Hofstadler SA, Wu Q, et al. 1995. Anal. Chem. 67:1159
30. Chowdhury SK, Katta V, Chait BT. 1990. J. Am. Chem. Soc. 112:9012
31. Carbeck JD, Severs JC, Gao JM, Wu QY, Smith RD, Whitesides GM. 1998. J. Phys. Chem. B 102:10596
32. Schnier PD, Gross DS, Williams ER. 1995. J. Am. Soc. Mass Spectrom. 6:1086
33. Schnier PD, Price WD, Williams ER. 1996. J. Am. Soc. Mass Spectrom. 7:972
34. Comisarow MB, Marshall AG. 1974. Chem. Phys. Lett. 25:282
35. Hendrickson CL, Emmett MR. 1999. Annu. Rev. Phys. Chem. 50:517
36. Alford JM, Williams PE, Trevor DJ, Smalley RE. 1986. Int. J. Mass Spectrom. Ion Process. 72:33
37. McIver RT, Hunter RL, Bowers WD. 1985. Int. J. Mass Spectrom. Ion Process. 64: 67
38. Kofel P, Alleman M, Kellerhals H, Wancek KP. 1985. Int. J. Mass Spectrom. Ion Process. 65:97
39. Dunbar RC, McMahon TB, Tholmann D, TonnerDS, Salahub DR, Wei DQ. 1995. J. Am. Chem. Soc. 117:12819
40. Dunbar RC, McMahon TB. 1998. Science 279:194
41. Price WD, Schnier PD, Jockrush RA, Strittmatter EF, Williams ER. 1996. J. Am. Chem. Soc. 118:10640
42. Reimann CT, Quist AP, Kopniczky J, Sundqvist BUR, Erlandsson R, Tengvall P. 1994. Nucl. Instrum. Methods B 88:29
43. Quist AP, Ahlbom J, Reimann CT, Sundqvist BUR. 1994. Nucl. Instrum. Methods B 88:164
44. Sullivan PA, Axelsson J, Altman S, Quist AP, Sundqvist BUR, Reimann CT. 1995. J. Mass Spectrom. 7:329
45. Covey TR, Douglas DJ. 1993. J. Am. Soc. Mass Spectrom. 4:616
46. Douglas DJ. 1994. J. Am. Soc. Mass Spectrom. 5:17
47. Collings BA, Douglas DJ. 1996. J. Am. Chem. Soc. 118:4488
48. Cox KA, Julian RK, Cooks RG, Kaiser RE. 1994. J. Am. Soc. Mass Spectrom. 5:127
49. Revercomb HE, Mason EA. 1997. Anal. Chem. 47:970
50. Dugourd Ph, Hudgins RR, Clemmer DE, Jarrold MF. 1997. Rev. Sci. Instrum. 68: 1122
51. Hudgins RR, Woenckhaus J, Jarrold MF. 1997. Int J. Mass Spectrom. Ion Process. 165/166:497
52. Mack E. 1925. J. Am. Chem. Soc. 47:2468
53. Hare WE, Mack E. 1932. J. Am. Chem. Soc. 54:4272
54. Hagen DF. 1979. Anal. Chem. 51:870
55. Karpas Z, Stimac RM, Rappoport Z. 1988. Int. J. Mass Spectrom. Ion Process. 83:163
56. Von Helden G, Hsu M-T, Kemper PR, Bowers MT. 1991. J. Chem. Phys. 95:3835
57. Von Helden G, Hsu M-T, Gotts N, Bowers MT. 1993. J. Phys. Chem. 97:8182
58. Mesleh MF, Hunter JM, Shvartsburg AA, Schatz GC, Jarrold MF. 1996. J. Phys. Chem. 100:16082
59. Shvartsburg AA, Jarrold MF. 1996. Chem. Phys. Lett. 261:86
60. Jarrold MF, Honea EC. 1992. J. Am. Chem. Soc. 114:459
61. Valentine SJ, Counterman AE, Hoagland CS, Reilly JP, Clemmer DE. 1998. J. Am. Soc. Mass. Spectrom. 9:1213
62. Srebalus CA, Li J, Marshall WS, Clemmer DE. 1999. Anal. Chem. 71:3918
63. Harrison AG. 1997. Mass Spectrom. Rev. 16:201
64. Hunter EPL, Lias SG. 1998. J. Phys. Chem. Ref. Data 27:413
65. Zhang K, Zimmerman DM, Chung-Phillips A, Cassady CJ. 1993. J. Am. Chem. Soc. 115:10812
66. Wu ZC, Fenselau C. 1993. Tetrahedron 49:9197
67. Wu JY, Lebrilla CB. 1993. J. Am. Chem. Soc. 115:3270
68. Carr SR, Cassady CJ. 1996. J. Am. Soc. Mass Spectrom. 7:1203
69. Wyttenbach T, Von Helden G, Bowers MT. 1996. J. Am. Chem. Soc. 118:8355
70. Suenram RD, Lovas FJ. 1978. J. Mol. Spectrosc. 72:272
71. Locke MJ, McIver RT. 1983. J. Am. Chem. Soc. 105:4226
72. Jensen JH, GordonMS. 1995. J. Am. Chem. Soc. 117:8159
73. Rizzo TR, Park YD, Levy DH. 1986. J. Chem. Phys. 85:6945
74. Price WD, Jockusch RA, Williams ER. 1997. J. Am. Chem. Soc. 119:11988
75. Chapo CJ, Paul JB, Provencal RA, Roth K, Saykally RJ. 1998. J. Am. Chem. Soc. 120:12956
76. Schnier PD, Price WD, Jockusch RA, Williams ER. 1996. J. Am. Chem. Soc. 118:7178
77. Campbell S, Rodgers MT, Marzluff EM, Beauchamp JL. 1995. J. Am. Chem. Soc. 117:12840
78. Lee S-W, Kim HS, Beauchamp JL. 1998. J. Am. Chem. Soc. 120:3188
79. Wyttenbach T, Bushnell JE, Bowers MT. 1998. J. Am. Chem. Soc. 120:5098
80. Rockwood AL, Busman M, Smith RD. 1991. Int. J. Mass Spectrom. Ion Process. 111:103
81. McLuckey SA, van Berkel GJ, Glish GL. 1990. J. Am. Chem. Soc. 112:5668
82. Wang XB, Wang LS. 1999. Nature 400:245
83. Cassady CJ, Carr SR. 1996. J. Mass Spectrom. 31:247
84. Valentine SJ, Counterman AE, Clemmer DE. 1997. J. Am. Soc. Mass Spectrom. 8:954
85. Gross DS, Williams ER. 1995. J. Am. Chem. Soc. 117:883
86. Gross DS, Rodriguez-Cruz SE, Bock S, Williams ER. 1995. J. Phys. Chem. 99:4034
87. Schnier PD, Gross DS, Williams ER. 1995. J. Am. Chem. Soc. 117:6747
88. Williams ER. 1996. J. Mass Spectrom. 31:831
89. Gronert S. 1996. J. Am. Chem. Soc. 118: 3525
90. Gronert S. 1999. Int. J. Mass Spectrom. 185-187:351
91. Zhang X, Cassady CJ. 1996. J. Am. Soc. Mass Spectrom. 7:1211
92. Miteva M, Demirev PA, Karshikoff AD. 1997. J. Phys. Chem. B 101:9645
93. Mao Y, Woenckhaus J, Kolafa J, Ratner MA, Jarrold MF. 1999. J. Am. Chem. Soc. 121:2712
94. Gilson MK, Honig B. 1986. Biopolymers 25:2097
95. Sharp KA, Honig B. 1990. Annu. Rev. Biophys. Biophys. Chem. 19:301
96. Warshel A, Åqvist J. 1991. Annu. Rev. Biophys. Biophys. Chem. 20:267
97. Shelimov KB, Clemmer DE, Hudgins RR, Jarrold MF. 1997. J. Am. Chem. Soc. 119:2240
98. Gross DS, Schnier PD, Rodriguez-Cruz SE, Fagerquist CK, Williams ER. 1996. Proc. Natl. Acad. Sci. USA 93:3143
99. Valentine SJ, Anderson J, Ellington AE, Clemmer DE. 1997. J. Phys. Chem. B 101:3891
100. Bakhtiar R, Wu Q, Hofstadler SA, Smith RD. 1994. Biol. Mass Spectrom. 23:707
101. Loo JA, Edmonds CG, Smith RD. 1988. Rapid Commun. Mass Spectrom. 2:207
102. Busman M, Rockwood AL, Smith RD. 1992. J. Phys. Chem. 96:2397
103. Senko MW, Speir JP, McLafferty FW. 1994. Anal. Chem. 66:2801
104. Little DP, Speir JP, Senko MW, O'Connor PB, McLafferty FW. 1994. Anal. Chem. 66:2809
105. Jockusch RA, Schnier PD, Price WD, Strittmatter EF, Demirev PA, Williams ER. 1997. Anal. Chem. 69:1119
106. Barbacci DC, Russell DH. 1999. J. Am. Soc. Mass Spectrom. 10:1038
107. Tsaprailis G, Nair H, Somogyi A, Wysocki VH, Zhong W, et al. 1999. J. Am. Chem. Soc. 121:5142
108. Zubarev RA, Kruger NA, Fridriksson EK, Lewis MA, Horn DM, et al. 1999. J. Am. Chem. Soc. 121:2857
109. Yu W, Vath JE, Huberty MC, Martin SA. 1993. Anal. Chem. 65:3015
110. Loo JA, Edmonds CG, Smith RD. 1993. Anal. Chem. 65:425
111. Ishikawa K, Nishimura T, Koga Y, Niwa Y. 1994. Rapid Commun. Mass Spectrom. 8:933
112. Roder H, Elösve GA, Englander SW. 1988. Nature 335:700
113. Englander SW. 1993. Science 262:848
114. Winger BE, Light-Wahl KJ, Rockwood AL, Smith RD. 1992. J. Am. Chem. Soc. 114:5897
115. Suckau D, Shi Y, Beu SC, Senko MW, Quinn JP, et al. 1993. Proc. Natl. Acad. Sci. USA 90:790
116. Wood TD, Chorush RA, Wampler FM, Little DP, O'Connor PB, McLafferty FW. 1995. Proc. Natl. Acad. Sci. USA 92:2451
117. Valentine SJ, Clemmer DE. 1997. J. Am. Chem. Soc. 119:3558
118. McLafferty FW, Guan Z, Haupts U, Wood TD, Kelleher NL. 1998. J. Am. Chem. Soc. 120:4732
119. Freitas MA, Hendrickson CL, Emmett MR, Marshall AG. 1999. Int J. Mass Spectrom. 187-189:565
120. Wang F, Freitas MA, Marshall AG, Sykes BD. 1999. Int. J. Mass Spectrom. 192:319
121. Gard E, GreenMK, Bregar J, Lebrilla CB. 1994. J. Am. Soc. Mass Spectrom. 5:623
122. Green MK, Lebrilla CB. 1998. Int. J. Mass Spectrom. Ion Process. 175:15
123. Campbell S, Rodgers MT, Marzluff EM, Beauchamp JL. 1994. J. Am. Chem. Soc. 116:9765
124. Wyttenbach T, Bowers MT. 1999. J. Am. Soc. Mass Spectrom. 10:9
125. Freitas MA, Marshall AG. 1999. Int. J. Mass Spectrom. 183:221
126. Stephenson JL, Schaaff TG, McLuckey SA. 1999. J. Am. Soc. Mass Spectrom. 10:552
127. Shelimov KB, Jarrold MF. 1996. J. Am. Chem. Soc. 118:10313
128. Shelimov KB, Jarrold MF. 1997. J. Am. Chem. Soc. 119:2987
129. Reimann CT, Velazquez I, Tapia O. 1998. J. Phys. Chem. B 102:2277
130. Reimann CT, Velazquez I, Tapia O. 1998. J. Phys. Chem. B 102:9344
131. Arteca GA, Velazquez I, Reimann CT, Tapia O. 1999. J. Chem. Phys. 111:4774
132. Arteca GA, Velazquez I, Reimann CT, Tapia O. 1999. Phys. Rev. E 59:5981
133. Mao Y, Ratner MA, Jarrold MF. 1999. J. Phys. Chem. B 103:10017
134. Alonso DO, Daggett V. 1998. Protein Sci. 7:860
135. Chakrabartty A, Baldwin RL. 1995. Adv. Protein Chem. 46:141
136. Blanco FJ, Rivas G, Serrano L. 1994. Nat. Struct. Biol. 1:584
137. Kaltashov IA, Feneslau C. 1997. Proteins Struct. Funct. Genet. 27:165
138. Li A, Feneslau C, Kaltashov IA. 1998. Proteins Struct. Funct. Genet. Suppl. 2:22
139. Ramirez-Alvarado M, Blanco FJ, Serrano L. 1996. Nat. Struct. Biol. 3:604
140. Ilyina E, Roongta V, Mayo KH. 1997. Biochemistry 36:5245
141. Hudgins RR, Mao Y, Ratner MA, Jarrold MF. 1999. Biophys. J. 76:1591
142. Samuelson S, Martyna G. 1999. J. Chem. Phys. 103:1752
143. Hudgins RR, Ratner MA, Jarrold MF. 1998. J. Am. Chem. Soc. 120:12974
144. Hudgins RR, Jarrold MF. 1999. J. Am. Chem. Soc. 121:3494
145. Hudgins RR, Jarrold MF. 2000. J. Phys. Chem B. 104:2154
146. Valentine SJ, Counterman AE, Clemmer DE. 1999. J. Am. Soc. Mass Spectrom. 10:1188
147. Lau YK, Ikuta S, Kebarle P. 1986. J. Am. Chem. Soc. 104:1462
148. Chowdhury SK, Katta V, Chait BT. 1990. Rapid Commun. Mass Spectrom. 4:81
149. Rodriguez-Cruz SE, Klassen JS, Williams ER. 1997. J. Am. Soc. Mass Spectrom. 8:565
150. Rodriguez-Cruz SE, Klassen JS, Williams ER. 1999. J. Am. Soc. Mass Spectrom. 10:958
151. Lee S-W, Freivogel P, Schindler T, Beauchamp JL. 1998. J. Am. Chem. Soc. 120:11758
152. Wei S, Shi Z, Castleman AW. 1991. J. Chem. Phys. 94:3268
153. Kuntz ID, Kauzmann W. 1974. Adv. Protein Chem. 28:239
154. Rupley JA, Careri G. 1991. Adv. Protein Chem. 41:37
155. Klassen JS, Blades AT, Kebarle P. 1995. J. Phys. Chem. 99:15509
156. Zhan D, Rosell J, Fenn JB. 1998. J. Am. Soc. Mass Spectrom. 9:1241
157. Woenckhaus J, Mao Y, Jarrold MF. 1997. J. Phys. Chem. B 101:847
158. Woenckhaus J, Hudgins RR, Jarrold MF. 1997. J. Am. Chem. Soc. 119:9586
159. Wlodawer A, Nachman J, Gilliland GL, Gallagher W, Woodward C. 1987. J. Mol. Biol. 198:469
160. Otting G, Wüthrich K. 1989. J. Am. Chem. Soc. 111:1871
161. Mao Y, Ratner MA, Jarrold MF. 2000. J. Am. Chem. Soc. 122:2950
162. Fye JL, Woenckhaus J, Jarrold MF. 1998. J. Am. Chem. Soc. 120:1327
163. Lee B, Richards FM. 1971. J. Mol. Biol 55:379
164. Theorell H, Åkesson Å. 1941. J. Am. Chem. Soc. 63:1818