-
1
-
-
0032498302
-
Crystal structure of a G:T/U mismatch-specific DNA glycosylase: Mismatch recognition by complementary-strand interactions
-
1. Barrett TE, Savva R, Panayotou G, Barlow T, Brown T, Pearl LH. 1998. Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions. Cell 92:117-29
-
(1998)
Cell
, vol.92
, pp. 117-129
-
-
Barrett, T.E.1
Savva, R.2
Panayotou, G.3
Barlow, T.4
Brown, T.5
Pearl, L.H.6
-
3
-
-
0030740948
-
Interaction of human apurinic endonuclease and DNA polymerase β in the base excision repair pathway
-
3. Bennett RAO, Wilson DM III, Wong D, Demple B. 1997. Interaction of human apurinic endonuclease and DNA polymerase β in the base excision repair pathway. Proc. Natl. Acad. Sci. USA 94:7166-69
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7166-7169
-
-
Bennett, R.A.O.1
Wilson D.M. III2
Wong, D.3
Demple, B.4
-
4
-
-
0032518911
-
Release of normal bases from intact DNA by a native DNA repair enzyme
-
4. Berdal KG, Johansen RF, Seeberg E. 1998. Release of normal bases from intact DNA by a native DNA repair enzyme. EMBO J. 15:363-67
-
(1998)
EMBO J.
, vol.15
, pp. 363-367
-
-
Berdal, K.G.1
Johansen, R.F.2
Seeberg, E.3
-
5
-
-
0027215935
-
Excision of 3-methylguanine from alkylated DNA by 3-methyladenine DNA glycosylase I from Escherichia coli
-
5. Bjelland S, Bjoras M, Seeberg E. 1993. Excision of 3-methylguanine from alkylated DNA by 3-methyladenine DNA glycosylase I from Escherichia coli. Nucleic Acids Res. 21:2041-49
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2041-2049
-
-
Bjelland, S.1
Bjoras, M.2
Seeberg, E.3
-
6
-
-
0024328839
-
UV-induced pyrimidine hydrates in DNA are repaired by bacterial and mammalian DNA glycosylase activities
-
6. Boorstein RJ, Hilbert TP, Cadet J, Cunningham RP, Teebor GW. 1989. UV-induced pyrimidine hydrates in DNA are repaired by bacterial and mammalian DNA glycosylase activities. Biochemistry 28:6164-70
-
(1989)
Biochemistry
, vol.28
, pp. 6164-6170
-
-
Boorstein, R.J.1
Hilbert, T.P.2
Cadet, J.3
Cunningham, R.P.4
Teebor, G.W.5
-
7
-
-
0029800969
-
Substrate specificity of Escherichia coli MutY protein
-
7. Bulychev NV, Varapresad CV, Dorman G, Miller JH, Eisenberg M, et al. 1996. Substrate specificity of Escherichia coli MutY protein. Biochemistry 35:13147-56
-
(1996)
Biochemistry
, vol.35
, pp. 13147-13156
-
-
Bulychev, N.V.1
Varapresad, C.V.2
Dorman, G.3
Miller, J.H.4
Eisenberg, M.5
-
8
-
-
0028862933
-
Characterization of the XRCCI-DNA ligase III complex in vitro and its absence from mutant hamster cells
-
8. Caldecott KW, Tucker JD, Stanker LH, Thompson LH. 1995. Characterization of the XRCCI-DNA ligase III complex in vitro and its absence from mutant hamster cells. Nucleic Acids Res. 23:4836-43
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4836-4843
-
-
Caldecott, K.W.1
Tucker, J.D.2
Stanker, L.H.3
Thompson, L.H.4
-
9
-
-
0029163078
-
Structure and function of DNA methyltransferases
-
9. Cheng X. 1995. Structure and function of DNA methyltransferases. Annu. Rev. Biophys. Biomol. Struct. 24:293-318
-
(1995)
Annu. Rev. Biophys. Biomol. Struct.
, vol.24
, pp. 293-318
-
-
Cheng, X.1
-
10
-
-
0030585418
-
Finding a basis for flipping bases
-
10. Cheng X, Blumenthal RM. 1996. Finding a basis for flipping bases. Structure 4:639-45
-
(1996)
Structure
, vol.4
, pp. 639-645
-
-
Cheng, X.1
Blumenthal, R.M.2
-
11
-
-
0031025997
-
Defective transcription-coupled repair of oxidative damage in Cockayne syndrome patients from XP group G
-
11. Cooper PK, Nouspikel T, Clarkson SG, Leadon SA. 1997. Defective transcription-coupled repair of oxidative damage in Cockayne syndrome patients from XP group G. Science 275:990-93
-
(1997)
Science
, vol.275
, pp. 990-993
-
-
Cooper, P.K.1
Nouspikel, T.2
Clarkson, S.G.3
Leadon, S.A.4
-
13
-
-
0028342951
-
Repair of oxidative damage to DNA: Enzymology and biology
-
13. Demple B, Harrison L. 1994. Repair of oxidative damage to DNA: enzymology and biology. Annu. Rev. Biochem. 63:915-48
-
(1994)
Annu. Rev. Biochem.
, vol.63
, pp. 915-948
-
-
Demple, B.1
Harrison, L.2
-
15
-
-
0018926091
-
DNA N-glycosylases and UV repair
-
15. Demple B, Linn S. 1980. DNA N-glycosylases and UV repair. Nature 287: 203-8
-
(1980)
Nature
, vol.287
, pp. 203-208
-
-
Demple, B.1
Linn, S.2
-
16
-
-
0025800612
-
Preferential recognition of I-T base-pairs in the initiation of excision-repair by hypoxanthine-DNA glycosylase
-
16. Dianov G, Lindahl T. 1991. Preferential recognition of I-T base-pairs in the initiation of excision-repair by hypoxanthine-DNA glycosylase. Nucleic Acids Res. 19: 3829-33
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 3829-3833
-
-
Dianov, G.1
Lindahl, T.2
-
17
-
-
0028604549
-
Unified catalytic mechanism for DNA glycosylases
-
17. Dodson ML, Michaels ML, Lloyd RS. 1994. Unified catalytic mechanism for DNA glycosylases. J. Biol. Chem. 269: 32709-12
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 32709-32712
-
-
Dodson, M.L.1
Michaels, M.L.2
Lloyd, R.S.3
-
18
-
-
0027301692
-
Evidence for an imino intermediate in the T4 endonuclease V reaction
-
18. Dodson ML, Schrock RD III, Lloyd RS. 1993. Evidence for an imino intermediate in the T4 endonuclease V reaction. Biochemistry 32:8284-90
-
(1993)
Biochemistry
, vol.32
, pp. 8284-8290
-
-
Dodson, M.L.1
Schrock R.D. III2
Lloyd, R.S.3
-
19
-
-
0025120572
-
The enzymology of apurinic/apyrimidinic endonucleases
-
19. Doetsch PW, Cunningham RP. 1990. The enzymology of apurinic/apyrimidinic endonucleases. Mutat. Res. 236:173-201
-
(1990)
Mutat. Res.
, vol.236
, pp. 173-201
-
-
Doetsch, P.W.1
Cunningham, R.P.2
-
20
-
-
0029929070
-
The helix-hairpin-helix DNA-binding motif: A structural basis for nonsequence-specific recognition of DNA
-
20. Doherty AJ, Serpell LC, Ponting CP. 1996. The helix-hairpin-helix DNA-binding motif: a structural basis for nonsequence-specific recognition of DNA. Nucleic Acids Res. 24:2488-97
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2488-2497
-
-
Doherty, A.J.1
Serpell, L.C.2
Ponting, C.P.3
-
21
-
-
0023782193
-
Purification and properties of mitochondrial uracil-DNA glycosylase from rat liver
-
21. Domena JD, Timmer RT, Dicharry SA, Mosbaugh DW. 1988. Purification and properties of mitochondrial uracil-DNA glycosylase from rat liver. Biochemistry 27:6742-51
-
(1988)
Biochemistry
, vol.27
, pp. 6742-6751
-
-
Domena, J.D.1
Timmer, R.T.2
Dicharry, S.A.3
Mosbaugh, D.W.4
-
22
-
-
0025257431
-
Biological significance of facilitated diffusion in protein-DNA interactions. Applications to T4 endonuclease V-initiated DNA repair
-
22. Dowd DR, Lloyd RS. 1990. Biological significance of facilitated diffusion in protein-DNA interactions. Applications to T4 endonuclease V-initiated DNA repair. J. Biol. Chem. 265:3424-31
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 3424-3431
-
-
Dowd, D.R.1
Lloyd, R.S.2
-
23
-
-
0023056224
-
Synthesis and properties of oligonucleotides containing 2′-deoxynebularine and 2′-deoxyxanthosine
-
23. Eritja R, Horowitz DM, Walker PA, Ziehler-Martin JP, Boosalis MS, et al. 1986. Synthesis and properties of oligonucleotides containing 2′-deoxynebularine and 2′-deoxyxanthosine. Nucleic Acids Res. 14:8135-53
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 8135-8153
-
-
Eritja, R.1
Horowitz, D.M.2
Walker, P.A.3
Ziehler-Martin, J.P.4
Boosalis, M.S.5
-
24
-
-
0030013201
-
Relationship between DNA repair and transcription
-
24. Friedberg EC. 1996. Relationship between DNA repair and transcription. Annu. Rev. Biochem. 65:15-42
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 15-42
-
-
Friedberg, E.C.1
-
26
-
-
0017381612
-
Endonuclease from Escherichia coli that acts specifically upon duplex DNA damaged by ultraviolet light, osmium, acid or X-rays
-
26. Gates FT III, Linn S. 1977. Endonuclease from Escherichia coli that acts specifically upon duplex DNA damaged by ultraviolet light, osmium, acid or X-rays. J. Biol. Chem. 252:2802-7
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 2802-2807
-
-
Gates F.T. III1
Linn, S.2
-
27
-
-
0030999894
-
Aging processes, DNA damage, and repair
-
27. Gilchrest BA, Bohr VA. 1997. Aging processes, DNA damage, and repair. FASEB J. 11:322-30
-
(1997)
FASEB J.
, vol.11
, pp. 322-330
-
-
Gilchrest, B.A.1
Bohr, V.A.2
-
28
-
-
0030475264
-
Specific recognition of A/G and A/7,8-dihydro-8-oxoguanine (8-oxoG) mismatches by Escherichia coli MutY: Removal of the C-terminal domain preferentially affects A/8-oxoG recognition
-
28. Gogos A, Cillo J, Clarke ND, Lu A-L. 1996. Specific recognition of A/G and A/7,8-dihydro-8-oxoguanine (8-oxoG) mismatches by Escherichia coli MutY: removal of the C-terminal domain preferentially affects A/8-oxoG recognition. Biochemistry 35:16665-71
-
(1996)
Biochemistry
, vol.35
, pp. 16665-16671
-
-
Gogos, A.1
Cillo, J.2
Clarke, N.D.3
Lu, A.-L.4
-
29
-
-
0030728449
-
The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites
-
29. Gorman MA, Morera S, Rothwell DG, de La Fortelle E, Mol CD, et al. 1997. The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites. EMBO J. 16:6548-58
-
(1997)
EMBO J.
, vol.16
, pp. 6548-6558
-
-
Gorman, M.A.1
Morera, S.2
Rothwell, D.G.3
De La Fortelle, E.4
Mol, C.D.5
-
30
-
-
0027324378
-
Mutagenesis by 8-oxoguanine: An enemy within
-
30. Grollman AP, Moriya M. 1993. Mutagenesis by 8-oxoguanine: an enemy within. Trends Genet. 9:246-49
-
(1993)
Trends Genet.
, vol.9
, pp. 246-249
-
-
Grollman, A.P.1
Moriya, M.2
-
31
-
-
0031763884
-
MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily
-
31. Guan Y, Manuel RC, Arvai AS, Parikh SS, Mol CD, et al. 1998. MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily. Nat. Struct. Biol. 5:1058-64
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 1058-1064
-
-
Guan, Y.1
Manuel, R.C.2
Arvai, A.S.3
Parikh, S.S.4
Mol, C.D.5
-
33
-
-
0028596398
-
Transcription-coupled repair and human disease
-
33. Hanawalt PC. 1994. Transcription-coupled repair and human disease. Science 266:1957-58
-
(1994)
Science
, vol.266
, pp. 1957-1958
-
-
Hanawalt, P.C.1
-
34
-
-
0031801367
-
Crystal structure of E. coli RuvA with bound DNA Holliday junction at 6 Å resolution
-
34. Hargreaves D, Rice DW, Sedelnikova SE, Artymiuk PJ, Lloyd RG, Rafferty JB. 1998. Crystal structure of E. coli RuvA with bound DNA Holliday junction at 6 Å resolution. Nat. Struct. Biol. 5:441-46
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 441-446
-
-
Hargreaves, D.1
Rice, D.W.2
Sedelnikova, S.E.3
Artymiuk, P.J.4
Lloyd, R.G.5
Rafferty, J.B.6
-
35
-
-
0023857601
-
Hypoxanthine-DNA glycosylase from Escherichia coli. Partial purification and properties
-
35. Harosh I, Sperling J. 1988. Hypoxanthine-DNA glycosylase from Escherichia coli. Partial purification and properties. J. Biol. Chem. 263:3328-34
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 3328-3334
-
-
Harosh, I.1
Sperling, J.2
-
36
-
-
0028305721
-
New substrates for old enzymes. 5-hydroxy-2′-deoxycytidine and 5-hydroxy-2′-deoxyuridine are substrates for Escherichia coli endonuclease III and formamidopyrimidine DNA glycosylase, while 5-hydroxy-2′-deoxyuridine is a substrate for uracil DNA N-glycosylase
-
36. Hatahet Z, Kow YW, Purmal AA, Cunningham RP, Wallace SS. 1994. New substrates for old enzymes. 5-hydroxy-2′-deoxycytidine and 5-hydroxy-2′-deoxyuridine are substrates for Escherichia coli endonuclease III and formamidopyrimidine DNA glycosylase, while 5-hydroxy-2′-deoxyuridine is a substrate for uracil DNA N-glycosylase. J. Biol. Chem. 269:18814-20
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18814-18820
-
-
Hatahet, Z.1
Kow, Y.W.2
Purmal, A.A.3
Cunningham, R.P.4
Wallace, S.S.5
-
37
-
-
0027304370
-
Characterization of the effects of a thymine glycol residue on the structure, dynamics, and stability of duplex DNA by NMR
-
37. Kao JY, Goljer I, Phan TA, Bolton PH. 1993. Characterization of the effects of a thymine glycol residue on the structure, dynamics, and stability of duplex DNA by NMR. J. Biol. Chem. 268:17787-93
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 17787-17793
-
-
Kao, J.Y.1
Goljer, I.2
Phan, T.A.3
Bolton, P.H.4
-
38
-
-
0021106244
-
Characterization of the Escherichia coli X-ray endonuclease, endonuclease III
-
38. Katcher HL, Wallace SS. 1983. Characterization of the Escherichia coli X-ray endonuclease, endonuclease III. Biochemistry 22:4071-81
-
(1983)
Biochemistry
, vol.22
, pp. 4071-4081
-
-
Katcher, H.L.1
Wallace, S.S.2
-
39
-
-
0030035663
-
Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase
-
39. Kavli B, Slupphaug G, Mol CD, Arvai AS, Petersen SB, et al. 1996. Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase. EMBO J. 15:3442-47
-
(1996)
EMBO J.
, vol.15
, pp. 3442-3447
-
-
Kavli, B.1
Slupphaug, G.2
Mol, C.D.3
Arvai, A.S.4
Petersen, S.B.5
-
40
-
-
0023641840
-
Conformational changes in the oligonucleotide duplex d(GCGTTGCG)-d(CGCAACGC) induced by formation of a cis-syn thymine dimer
-
40. Kemmick J, Boelens R, Koning TMG, Kaptein R, van der Marel GA, van Boom JH. 1987. Conformational changes in the oligonucleotide duplex d(GCGTTGCG)-d(CGCAACGC) induced by formation of a cis-syn thymine dimer. Eur. J. Biochem. 162:37-43
-
(1987)
Eur. J. Biochem.
, vol.162
, pp. 37-43
-
-
Kemmick, J.1
Boelens, R.2
Koning, T.M.G.3
Kaptein, R.4
Van Der Marel, G.A.5
Van Boom, J.H.6
-
41
-
-
0029842307
-
Reconstitution of DNA base excision-repair with purified human proteins: Interaction between DNA polymerase β and the XRCCI protein
-
41. Kubota Y, Nash RA, Klungland A, Schär P, Barnes DE, Lindahl T. 1996. Reconstitution of DNA base excision-repair with purified human proteins: interaction between DNA polymerase β and the XRCCI protein. EMBO J. 15:6662-70
-
(1996)
EMBO J.
, vol.15
, pp. 6662-6670
-
-
Kubota, Y.1
Nash, R.A.2
Klungland, A.3
Schär, P.4
Barnes, D.E.5
Lindahl, T.6
-
42
-
-
0001195990
-
Structure of a duplex DNA containing a thymine glycol residue in solution
-
42. Kung HC, Bolton PH. 1997. Structure of a duplex DNA containing a thymine glycol residue in solution. J. Biol. Chem. 272: 9227-36
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 9227-9236
-
-
Kung, H.C.1
Bolton, P.H.2
-
43
-
-
0026499118
-
Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III
-
43. Kuo CF, McRee DE, Fisher CL, O'Handley SF, Cunningham RP, Tainer JA. 1994. Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III. Science 258: 434-40
-
(1994)
Science
, vol.258
, pp. 434-440
-
-
Kuo, C.F.1
McRee, D.E.2
Fisher, C.L.3
O'Handley, S.F.4
Cunningham, R.P.5
Tainer, J.A.6
-
44
-
-
0030602838
-
Structural basis for the excision repair of alkylation-damaged DNA
-
44. Labahn J, Scharer OD, Long A, Ezaz-Nikpay K, Verdine GL, Ellenberger TE. 1996. Structural basis for the excision repair of alkylation-damaged DNA. Cell 86:321-29
-
(1996)
Cell
, vol.86
, pp. 321-329
-
-
Labahn, J.1
Scharer, O.D.2
Long, A.3
Ezaz-Nikpay, K.4
Verdine, G.L.5
Ellenberger, T.E.6
-
45
-
-
0026354983
-
DNase I-induced DNA conformation. 2 Å structure of a DNase I-octamer complex
-
45. Lahm A, Suck D. 1991. DNase I-induced DNA conformation. 2 Å structure of a DNase I-octamer complex. J. Mol. Biol. 222:645-67
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 645-667
-
-
Lahm, A.1
Suck, D.2
-
46
-
-
0029127485
-
The interaction of T4 endonuclease V E23Q mutant with thymine dimer-and tetrahydrofuran-containing DNA
-
46. Latham KA, Manuel RC, Lloyd RS. 1995. The interaction of T4 endonuclease V E23Q mutant with thymine dimer-and tetrahydrofuran-containing DNA. J. Bacteriol. 177:5166-68
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5166-5168
-
-
Latham, K.A.1
Manuel, R.C.2
Lloyd, R.S.3
-
47
-
-
0028125823
-
Nuclear magnetic resonance study of the interaction of T4 endonuclease V with DNA
-
47. Lee BJ, Sakashita H, Ohkubo T, Ikehara M, Doi T, et al. 1994. Nuclear magnetic resonance study of the interaction of T4 endonuclease V with DNA. Biochemistry 33:57-64
-
(1994)
Biochemistry
, vol.33
, pp. 57-64
-
-
Lee, B.J.1
Sakashita, H.2
Ohkubo, T.3
Ikehara, M.4
Doi, T.5
-
48
-
-
0025342965
-
Repair of intrinsic DNA lesions
-
48. Lindahl T. 1990. Repair of intrinsic DNA lesions. Mutat. Res. 238.305-11
-
(1990)
Mutat. Res.
, vol.238
, pp. 305-311
-
-
Lindahl, T.1
-
49
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
49. Lindahl T. 1993. Instability and decay of the primary structure of DNA. Nature 362:709-15
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
51
-
-
0022037404
-
Apurinic sites as mutagenic intermediates
-
51. Loeb LA. 1985. Apurinic sites as mutagenic intermediates. Cell 40:483-84
-
(1985)
Cell
, vol.40
, pp. 483-484
-
-
Loeb, L.A.1
-
52
-
-
0030018681
-
Identification of the structural and functional domains of MutY, an Escherichia coli DNA mismatch repair enzyme
-
52. Manuel RC, Czerwinski EW, Lloyd RS. 1996. Identification of the structural and functional domains of MutY, an Escherichia coli DNA mismatch repair enzyme. J. Biol. Chem. 271:16218-26
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 16218-16226
-
-
Manuel, R.C.1
Czerwinski, E.W.2
Lloyd, R.S.3
-
53
-
-
0030987556
-
Cloning, overexpression, and biochemical characterization of the catalytic domain of MutY
-
53. Manuel RC, Lloyd RS. 1997. Cloning, overexpression, and biochemical characterization of the catalytic domain of MutY. Biochemistry 36:11140-52
-
(1997)
Biochemistry
, vol.36
, pp. 11140-11152
-
-
Manuel, R.C.1
Lloyd, R.S.2
-
54
-
-
0027930608
-
Crystal structure of a DNA duplex containing 8-hydroxyde-oxyguanine-adenine base-pairs
-
54. McAuley-Hecht KE, Leonard GA, Gibson NJ, Thomson JB, Watson WP, et al. 1994. Crystal structure of a DNA duplex containing 8-hydroxyde-oxyguanine-adenine base-pairs. Biochemistry 33:10266-70
-
(1994)
Biochemistry
, vol.33
, pp. 10266-10270
-
-
McAuley-Hecht, K.E.1
Leonard, G.A.2
Gibson, N.J.3
Thomson, J.B.4
Watson, W.P.5
-
55
-
-
0026684849
-
Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA
-
55. Michaels ML, Cruz C, Grollman AP, Miller JH. 1992. Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA. Proc. Natl. Acad. Sci. USA 89:7022-25
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 7022-7025
-
-
Michaels, M.L.1
Cruz, C.2
Grollman, A.P.3
Miller, J.H.4
-
56
-
-
0029943449
-
Mismatch repair in replication fidelity, genetic recombination, and cancer biology
-
56. Modrich P, Lahue R. 1996. Mismatch repair in replication fidelity, genetic recombination, and cancer biology. Annu. Rev. Biochem. 65:101-33
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 101-133
-
-
Modrich, P.1
Lahue, R.2
-
57
-
-
0029084487
-
Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: Protein mimicry of DNA
-
57. Mol CD, Arvai AS, Sanderson RJ, Slupphaug G, Kavli B, et al. 1995a. Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: protein mimicry of DNA. Cell 82:701-8
-
(1995)
Cell
, vol.82
, pp. 701-708
-
-
Mol, C.D.1
Arvai, A.S.2
Sanderson, R.J.3
Slupphaug, G.4
Kavli, B.5
-
58
-
-
0028934537
-
Crystal structure and mutational analysis of human uracil-DNA glycosylase: Structural basis for specificity and catalysis
-
58. Mol CD, Arvai AS, Slupphaug G, Kavli B, Alseth I, et al. 1995b. Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis. Cell 80:869-78
-
(1995)
Cell
, vol.80
, pp. 869-878
-
-
Mol, C.D.1
Arvai, A.S.2
Slupphaug, G.3
Kavli, B.4
Alseth, I.5
-
59
-
-
0028923440
-
Structure and function of the multifunctional DNA-repair enzyme exonuclease III
-
59. Mol CD, Kuo C-F, Thayer MM, Cunningham RP, Tainer JA. 1995c. Structure and function of the multifunctional DNA-repair enzyme exonuclease III. Nature 374:381-86
-
(1995)
Nature
, vol.374
, pp. 381-386
-
-
Mol, C.D.1
Kuo, C.-F.2
Thayer, M.M.3
Cunningham, R.P.4
Tainer, J.A.5
-
60
-
-
0001882582
-
Structural phylogenetics of DNA base-excision repair
-
ed. F Eckstein, DMJ Lilley, Berlin: Springer-Verlag
-
60. Mol CD, Parikh SS, Lo TP, Tainer JA. 1998. Structural phylogenetics of DNA base-excision repair. In Nucleic Acids & Molecular Biology, ed. F Eckstein, DMJ Lilley, 12:29-69. Berlin: Springer-Verlag
-
(1998)
Nucleic Acids & Molecular Biology
, vol.12
, pp. 29-69
-
-
Mol, C.D.1
Parikh, S.S.2
Lo, T.P.3
Tainer, J.A.4
-
61
-
-
0029013675
-
Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: Refinement at 1.45 Å and X-ray analysis of the three active site mutants
-
61. Morikawa K, Ariyoshi M, Vassylyev DG, Matsumoto O, Katayanagi K, Ohtsuka E. 1995. Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 Å and X-ray analysis of the three active site mutants. J. Mol. Biol. 249:360-75
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 360-375
-
-
Morikawa, K.1
Ariyoshi, M.2
Vassylyev, D.G.3
Matsumoto, O.4
Katayanagi, K.5
Ohtsuka, E.6
-
62
-
-
0026544541
-
X-ray structure of T4 endonuclease V: An excision repair enzyme specific for a pyrimidine dimer
-
62. Morikawa K, Matsumoto O, Tsujimoto M, Katayanagi K, Ariyoshi M, et al. 1992. X-ray structure of T4 endonuclease V: an excision repair enzyme specific for a pyrimidine dimer. Science 256:523-26
-
(1992)
Science
, vol.256
, pp. 523-526
-
-
Morikawa, K.1
Matsumoto, O.2
Tsujimoto, M.3
Katayanagi, K.4
Ariyoshi, M.5
-
63
-
-
0020490817
-
Metabolism of dITP in HeLa cell extracts, incorporation into DNA by isolated nuclei and release of hypoxanthine from DNA by a hypoxanthine-DNA glycosylase activity
-
63. Myrnes B, Guddal PH, Krokan H. 1982. Metabolism of dITP in HeLa cell extracts, incorporation into DNA by isolated nuclei and release of hypoxanthine from DNA by a hypoxanthine-DNA glycosylase activity. Nucleic Acids Res. 10:3693-701
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 3693-3701
-
-
Myrnes, B.1
Guddal, P.H.2
Krokan, H.3
-
64
-
-
0030220956
-
Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily
-
64. Nash HM, Bruner SD, Scharer OD, Kawate T, Addona TA, et al. 1996. Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily. Curr. Biol. 6:968-80
-
(1996)
Curr. Biol.
, vol.6
, pp. 968-980
-
-
Nash, H.M.1
Bruner, S.D.2
Scharer, O.D.3
Kawate, T.4
Addona, T.A.5
-
65
-
-
0031239573
-
The critical active-site amine of the human 8-oxoguarine DNA glycosylase, hOggl: Direct identification, ablation and chemical reconstitution
-
65. Nash HM, Lu R, Lane WS, Verdine GL. 1997. The critical active-site amine of the human 8-oxoguarine DNA glycosylase, hOggl: direct identification, ablation and chemical reconstitution. Chem. Biol. 4:693-702
-
(1997)
Chem. Biol.
, vol.4
, pp. 693-702
-
-
Nash, H.M.1
Lu, R.2
Lane, W.S.3
Verdine, G.L.4
-
66
-
-
0027383758
-
The purification of a mismatch-specific thymine-DNA glycosylase from HeLa cells
-
66. Neddermann P, Jirieny J. 1993. The purification of a mismatch-specific thymine-DNA glycosylase from HeLa cells. J. Biol. Chem. 268:21218-24
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 21218-21224
-
-
Neddermann, P.1
Jirieny, J.2
-
67
-
-
0030999231
-
Role of specific amino acid residues in T4 endonuclease V that alter nontarget DNA binding
-
67. Nyaga SG, Dodson ML, Lloyd RS. 1997. Role of specific amino acid residues in T4 endonuclease V that alter nontarget DNA binding. Biochemistry 36:4080-88
-
(1997)
Biochemistry
, vol.36
, pp. 4080-4088
-
-
Nyaga, S.G.1
Dodson, M.L.2
Lloyd, R.S.3
-
68
-
-
0031961907
-
Direct measurement of the substrate preference of uracil-DNA glycosylase
-
68. Panayotou G, Brown T, Barlow T, Pearl LH, Savva R. 1998. Direct measurement of the substrate preference of uracil-DNA glycosylase. J. Biol. Chem. 273:45-50
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 45-50
-
-
Panayotou, G.1
Brown, T.2
Barlow, T.3
Pearl, L.H.4
Savva, R.5
-
69
-
-
0032167424
-
Base-excision repair initiation revealed by crystal structures and DNA-binding kinetics of human uracil-DNA glycosylase bound to DNA
-
69. Parikh SS, Mol CD, Slupphaug G, Bharati S, Krokan HE, Tainer JA. 1998. Base-excision repair initiation revealed by crystal structures and DNA-binding kinetics of human uracil-DNA glycosylase bound to DNA. EMBO J. 17:5214-26
-
(1998)
EMBO J.
, vol.17
, pp. 5214-5226
-
-
Parikh, S.S.1
Mol, C.D.2
Slupphaug, G.3
Bharati, S.4
Krokan, H.E.5
Tainer, J.A.6
-
70
-
-
0031574192
-
Base excision repair enzyme family portrait: Integrating the structure and chemistry of an entire DNA repair pathway
-
70. Parikh SS, Mol CD, Tainer JA. 1997. Base excision repair enzyme family portrait: integrating the structure and chemistry of an entire DNA repair pathway. Structure 5:1543-50
-
(1997)
Structure
, vol.5
, pp. 1543-1550
-
-
Parikh, S.S.1
Mol, C.D.2
Tainer, J.A.3
-
71
-
-
0028812143
-
Crystal structure of DNA photolyase from Escherichia coli
-
71. Park H-W, Kim S-T, Sancar A, Deisenhofer J. 1995. Crystal structure of DNA photolyase from Escherichia coli. Science 268:1866-72
-
(1995)
Science
, vol.268
, pp. 1866-1872
-
-
Park, H.-W.1
Kim, S.-T.2
Sancar, A.3
Deisenhofer, J.4
-
73
-
-
0029817866
-
Crystal structures of human DNA polymerase beta complexed with DNA: Implications for catalytic mechanism, processivity, and fidelity
-
73. Pelletier H, Sawaya MR, Wolfe W, Wilson SH, Kraut J. 1996. Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity. Biochemistry 35:12742-61
-
(1996)
Biochemistry
, vol.35
, pp. 12742-12761
-
-
Pelletier, H.1
Sawaya, M.R.2
Wolfe, W.3
Wilson, S.H.4
Kraut, J.5
-
74
-
-
0030018848
-
Specific interaction of DNA polymerase β and DNA ligase I in a multiprotein base excision repair complex from bovine testis
-
74. Prasad R, Singhal RK, Srivastava DK, Molina JT, Tomkinson AE, Wilson SH. 1996. Specific interaction of DNA polymerase β and DNA ligase I in a multiprotein base excision repair complex from bovine testis. J. Biol. Chem. 271:16000-7
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 16000-16007
-
-
Prasad, R.1
Singhal, R.K.2
Srivastava, D.K.3
Molina, J.T.4
Tomkinson, A.E.5
Wilson, S.H.6
-
75
-
-
0017236583
-
An endonuclease from Escherichia coli that introduces single polynucleotide chain scissions in ultraviolet-irradiated DNA
-
75. Radman M. 1976. An endonuclease from Escherichia coli that introduces single polynucleotide chain scissions in ultraviolet-irradiated DNA. J. Biol. Chem. 251:1438-45
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 1438-1445
-
-
Radman, M.1
-
76
-
-
0032574770
-
Activation of apurinic/apyrimidinic endonuclease in human cells by reactive oxygen species and its correlation with their adaptive response to genotoxicity of free radicals
-
76. Ramana CV, Boldogh I, Izumi T, Mitra S. 1998. Activation of apurinic/apyrimidinic endonuclease in human cells by reactive oxygen species and its correlation with their adaptive response to genotoxicity of free radicals. Proc. Natl. Acad. Sci. USA 95:5061-66
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5061-5066
-
-
Ramana, C.V.1
Boldogh, I.2
Izumi, T.3
Mitra, S.4
-
77
-
-
0028117141
-
Structure and function of DNA photolyase
-
77. Sancar A. 1994. Structure and function of DNA photolyase. Biochemistry 11:2-9
-
(1994)
Biochemistry
, vol.11
, pp. 2-9
-
-
Sancar, A.1
-
78
-
-
0028239225
-
Excision of hypoxanthine from DNA containing dIMP residues by the Escherichia coli, yeast, rat, and human alkylpurine DNA glycosylases
-
78. Saparbaev M, Laval J. 1994. Excision of hypoxanthine from DNA containing dIMP residues by the Escherichia coli, yeast, rat, and human alkylpurine DNA glycosylases. Proc. Natl. Acad. Sci. USA 91:5872-77
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 5872-5877
-
-
Saparbaev, M.1
Laval, J.2
-
79
-
-
0028959237
-
The structural basis of specific base-excision repair by uracil-DNA glycosylase
-
79. Savva R, McAuley-Hecht K, Brown T, Pearl L. 1995. The structural basis of specific base-excision repair by uracil-DNA glycosylase. Nature 373:487-93
-
(1995)
Nature
, vol.373
, pp. 487-493
-
-
Savva, R.1
McAuley-Hecht, K.2
Brown, T.3
Pearl, L.4
-
80
-
-
0029115366
-
Nucleotide mimicry in the crystal structure of the uracil-DNA glycosylase-uracil glycosylase inhibitor protein complex
-
80. Savva R, Pearl LH. 1995. Nucleotide mimicry in the crystal structure of the uracil-DNA glycosylase-uracil glycosylase inhibitor protein complex. Nat. Struct. Biol. 2:752-57
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 752-757
-
-
Savva, R.1
Pearl, L.H.2
-
81
-
-
0038342180
-
Specific binding of a designed abasic site analog to multiple DNA glycosylases
-
81. Scharer OD, Nash HM, Jiricny J, Laval J, Verdine GL. 1998. Specific binding of a designed abasic site analog to multiple DNA glycosylases. J. Biol. Chem. 273:8592-97
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 8592-8597
-
-
Scharer, O.D.1
Nash, H.M.2
Jiricny, J.3
Laval, J.4
Verdine, G.L.5
-
82
-
-
0026075807
-
Reductive methylation of the amino terminus of endonuclease V eradicates catalytic activities. Evidence for an essential role of the amino terminus in the chemical mechanisms of catalysis
-
82. Schrock RD III, Lloyd RS. 1991. Reductive methylation of the amino terminus of endonuclease V eradicates catalytic activities. Evidence for an essential role of the amino terminus in the chemical mechanisms of catalysis. J. Biol. Chem. 266:17631-39
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 17631-17639
-
-
Schrock R.D. III1
Lloyd, R.S.2
-
84
-
-
0028933306
-
Properties of a recombinant human uracil-DNA glycosylase from the UNG-gene and evidence that the UNG-gene encodes the major uracil-DNA glycosylase
-
84. Slupphaug G, Eftedal I, Kavli B, Bharati S, Helle MM, et al. 1995. Properties of a recombinant human uracil-DNA glycosylase from the UNG-gene and evidence that the UNG-gene encodes the major uracil-DNA glycosylase. Biochemistry 34:128-38
-
(1995)
Biochemistry
, vol.34
, pp. 128-138
-
-
Slupphaug, G.1
Eftedal, I.2
Kavli, B.3
Bharati, S.4
Helle, M.M.5
-
85
-
-
0029904839
-
A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
-
85. Slupphaug G, Mol CD, Kavli B, Arvai AS, Krokan HE, Tainer JA. 1996. A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature 384:87-92
-
(1996)
Nature
, vol.384
, pp. 87-92
-
-
Slupphaug, G.1
Mol, C.D.2
Kavli, B.3
Arvai, A.S.4
Krokan, H.E.5
Tainer, J.A.6
-
86
-
-
0016692306
-
Endonucleolytic incision of X-irradiated deoxyribonucleic acid by extracts of Escherichia coli
-
86. Strniste GF, Wallace SS. 1975. Endonucleolytic incision of X-irradiated deoxyribonucleic acid by extracts of Escherichia coli. Proc. Natl. Acad. Sci. USA 72:1997-2001
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 1997-2001
-
-
Strniste, G.F.1
Wallace, S.S.2
-
87
-
-
0022476864
-
Structure of DNase I at 2.0 Å resolution suggests a mechanism for binding to and cutting DNA
-
87. Suck D, Oefner C. 1986. Structure of DNase I at 2.0 Å resolution suggests a mechanism for binding to and cutting DNA. Nature 321:620-25
-
(1986)
Nature
, vol.321
, pp. 620-625
-
-
Suck, D.1
Oefner, C.2
-
88
-
-
0030694239
-
Crystal structure of DNA photolyase from Anacystis nidulans
-
88. Tamada T, Kitadokoro K, Higuchi Y, Inaka K, Yasui A, et al. 1997. Crystal structure of DNA photolyase from Anacystis nidulans. Nat. Struct. Biol. 4:887-91
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 887-891
-
-
Tamada, T.1
Kitadokoro, K.2
Higuchi, Y.3
Inaka, K.4
Yasui, A.5
-
89
-
-
0029119097
-
Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure
-
89. Thayer MM, Ahern H, Xing D, Cunningham RP, Tainer JA. 1995. Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure. EMBO J. 14:4108-20
-
(1995)
EMBO J.
, vol.14
, pp. 4108-4120
-
-
Thayer, M.M.1
Ahern, H.2
Xing, D.3
Cunningham, R.P.4
Tainer, J.A.5
-
90
-
-
0031878710
-
Double-strand break repair mediated by DNA end-joining
-
90. Tsukamoto Y, Ikeda H. 1998. Double-strand break repair mediated by DNA end-joining. Genes Cells 3:135-44
-
(1998)
Genes Cells
, vol.3
, pp. 135-144
-
-
Tsukamoto, Y.1
Ikeda, H.2
-
91
-
-
0029896229
-
Cloning and expression in E. coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine
-
91. van der Kemp PA, Thomas D, Barbey R, de Oliveira R, Boiteux S. 1996. Cloning and expression in E. coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine. Proc. Natl. Acad. Sci. USA 93:5197-202
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 5197-5202
-
-
Van Der Kemp, P.A.1
Thomas, D.2
Barbey, R.3
De Oliveira, R.4
Boiteux, S.5
-
93
-
-
0028863468
-
Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: Structural basis for damaged DNA recognition
-
93. Vassylyev DG, Kashiwagi T, Mikami Y, Ariyoshi M, Iwai S, et al. 1995. Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition. Cell 83:773-82
-
(1995)
Cell
, vol.83
, pp. 773-782
-
-
Vassylyev, D.G.1
Kashiwagi, T.2
Mikami, Y.3
Ariyoshi, M.4
Iwai, S.5
-
94
-
-
0030589691
-
Precluding uracil from DNA
-
94. Vassylyev DG, Morikawa K. 1996. Precluding uracil from DNA. Structure 4: 1381-85
-
(1996)
Structure
, vol.4
, pp. 1381-1385
-
-
Vassylyev, D.G.1
Morikawa, K.2
-
95
-
-
0031149139
-
How do DNA repair proteins locate damaged bases in the genome?
-
95. Verdine GL, Bruner SD. 1997. How do DNA repair proteins locate damaged bases in the genome? Chem. Biol. 4:329-34
-
(1997)
Chem. Biol.
, vol.4
, pp. 329-334
-
-
Verdine, G.L.1
Bruner, S.D.2
-
96
-
-
0026495424
-
Uracil-DNA glycosylases preferentially excise mispaired uracil
-
96. Verri A, Mazzarello P, Spadari S, Focher F. 1992. Uracil-DNA glycosylases preferentially excise mispaired uracil. Biochem. J. 287:1007-10
-
(1992)
Biochem. J.
, vol.287
, pp. 1007-1010
-
-
Verri, A.1
Mazzarello, P.2
Spadari, S.3
Focher, F.4
-
99
-
-
0030839750
-
Abasic site binding by the human apurinic endonuclease, Ape, and determination of the DNA contact sites
-
99. Wilson DM III, Takeshita M, Demple B. 1997. Abasic site binding by the human apurinic endonuclease, Ape, and determination of the DNA contact sites. Nucleic Acids Res. 25:933-39
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 933-939
-
-
Wilson D.M. III1
Takeshita, M.2
Demple, B.3
-
100
-
-
0029001186
-
Incision activity of human apurinic endonuclease (Ape) at abasic site analogs in DNA
-
100. Wilson DM III, Takeshita M, Grollman AP, Demple B. 1995. Incision activity of human apurinic endonuclease (Ape) at abasic site analogs in DNA. J. Biol. Chem. 270:16002-7
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 16002-16007
-
-
Wilson D.M. III1
Takeshita, M.2
Grollman, A.P.3
Demple, B.4
-
101
-
-
0030768038
-
Nucleotide excision repair in mammalian cells
-
101. Wood RD. 1997. Nucleotide excision repair in mammalian cells. J. Biol. Chem. 272:23465-68
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 23465-23468
-
-
Wood, R.D.1
-
102
-
-
16044372779
-
Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli
-
102. Yamagata Y, Kato M, Odawara K, Tokuno Y, Nakashima Y, et al. 1996. Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli. Cell 86:311-19
-
(1996)
Cell
, vol.86
, pp. 311-319
-
-
Yamagata, Y.1
Kato, M.2
Odawara, K.3
Tokuno, Y.4
Nakashima, Y.5
-
103
-
-
0031448935
-
Reaction mechanism of (6-4) photolyase
-
103. Zhao X, Liu J, Hsu DS, Zhao S, Taylor JS, Sancar A. 1997. Reaction mechanism of (6-4) photolyase. J. Biol. Chem. 272:32580-90
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 32580-32590
-
-
Zhao, X.1
Liu, J.2
Hsu, D.S.3
Zhao, S.4
Taylor, J.S.5
Sancar, A.6
|