Precluding uracil from DNA

Structure

Volumn 4, Issue 12, 1996, Pages 1381-1385

  Vassylyev, Dmitry G ^a   Morikawa, Kosuke ^b  

^a ADVANCED TELECOMMUNICATIONS RESEARCH INSTITUTE INTERNATIONAL   (Japan)

^b BIOMOL ENG RESEARCH INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0030589691     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(96)00145-1     Document Type: Article

References (18)

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2. Ingraham, H.A., Dickey, L. & Goulian, M. (1986). DNA fragmentation and cytotoxity from increased cellular deoxyuridylate. Biochemistry 25, 3225-3230.
3. Lindahl, T. (1994). Instability and decay of the primary structure of DNA. Nature 362, 709-715.
4. Larsson, G., Svensson, L.A. & Nyman, P.O. (1996). Crystal structure of the Escherichia coli dUTPase in complex with a substrate analogue (dUDP). Nat. Struct. Biol. 3, 532-538.
5. Mol, C.D., Harris, J.M., McIntosh, E.M. & Tainer, J.A. (1996). Human dUTP pyrophosphatase: uracil recognition by a β hairpin and active sites formed by three separate subunits. Structure 4, 1077-1092.
6. Slupphaug, G., Mol, C.D., Kavli, B., Arvai, A.S., Krokan, H.E. & Tainer, J.A. (1996). A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature, 384, 87-92.
7. Sawa, R., McAuley-Hecht, K., Brown, T. & Pearl, L. (1995). The structural basis of specific base-excision repair by uracil-DNA glycosylase. Nature 373, 487-493.
8. Mol, C.D., et al., & Tainer, J.A. (1995). Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis. Cell 80, 869-878.
9. Kavli, B., et al., & Krokan, H.E. (1996). Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase. EMBO J. 15, 3442-3447.
10. Finer-Moore, J.S., Fauman, E.B., Foster, P.G., Perry, K.M., Santi, D.V. & Stroud, R.M. (1993). Refined structures of substrate-bound and phosphate-bound thymidylate synthase from Lactobacillus casei. J. Mol. Biol. 232, 1101-1116.
11. Eftedal, I., Guddal, P.H., Slupphaug, G., Volden, G. & Krokan, H.E. (1993). Consensus sequence for good and poor removal of uracil from double stranded DNA by uracil-DNA glycosylase. Nucleic Acids Res. 21, 2095-2101.
12. Slupphaug, G., et al., & Krokan, H.E. (1995). Properties of a recombinant human uracil-DNA glycosylase from the UNG gene and evidence that UNG encodes the major uracil-DNA glycosylase. Biochemistry 34, 128-138.
13. Klimasauskas. S., Kumar, S., Roberts, R.J. & Cheng, X. (1994). Hha I methyltransferase flips its target base out of the DNA duplex. Cell 76, 357-369.
14. Cheng, X. & Blumenthal, R.M. (1996). Finding a basis for flipping bases. Structure 4, 639-645.
15. Park, H.-W., Kim, S.-T., Sancar, A. & Deisenhofer, J. (1995). Crystal structure of DNA photolyase from Escherichia coli. Science 268, 1866-1872.
16. Reinisch, K.M., Chen, L., Verdine, G.L. & Lipscomb, W.N. (1995). The crystal structure of Haelll methyltransferase covalently complexed to DNA: an extrahelical cytosine and rearranged base pairing. Cell 82, 143-153.
17. Vassylyev, D.G., et al., & Morikawa, K. (1995). Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition. Cell 83, 773-782.
18. Jones, TA., Zou, J.Y., Cowan, S.W., Kjeldgaard, M. (1991). An improved methods for building protein models in electron density maps and the location of errors in these models. Acta Cryst. A 47, 110-119.