Structure of a duplex DNA containing a thymine glycol residue in solution

Journal of Biological Chemistry

Volumn 272, Issue 14, 1997, Pages 9227-9236

  Kung, Hsiang Chuan ^a   Bolton, Philip H ^a  

^a WESLEYAN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

ARTICLE; DNA DAMAGE; DNA SEQUENCE; DNA STRUCTURE; IONIZING RADIATION; MOLECULAR DYNAMICS; OXIDATIVE STRESS; PRIORITY JOURNAL;

CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DNA; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; SURFACE PROPERTIES; THYMINE;

EID: 0001195990     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.272.14.9227     Document Type: Article

References (46)

1. Lindahl, T. (1982) Annu. Rev. Biochem. 51, 610-687
2. Freidberg, E. C. (1985) DNA Repair, Freeman and Company, New York
3. Freidberg, E. C. (1988) Microbiol. Rev. 52, 70-102
4. George, A. M., and Cramp, W. A. (1987) Prog. Biophys. Mol. Biol. 50, 121-169
5. Von Sonntag, C., and Schuchmann, H.-P. (1990) Methods Enzymol. 186, 511-520
6. Von Sonntag, C. (1987) The Chemical Basis of Radiation Biology, Taylor and Francis, London
7. Ward, J. F. (1988) Prog. Nucleic Acid Res. Mol. Biol. 35, 95-125
8. Wagner, J. R., Van Liev, J. E., Decarroz, C., Berger, M., and Cadet, J. (1990) Methods Enzymol. 186, 502-511
9. Wallace, S. S. (1988) Environ. Mol. Mutagen. 12, 431-477
10. Teebor, G. W., Boorstein, R. J., and Cadet, J. (1988) Int. J. Radiat. Biol. 54, 131-150
11. Teoule, P. (1987) Int. J. Radiat. Biol. 51, 573-589
12. Symons, M. C. R. (1987) J. Chem. Soc. Faraday Trans. 183, 1-11
13. Demple, B., and Levin, J. D. (1991) Oxidative Stress II (H. Sites, ed) Academic Press, New York
14. Ekert, B., and Levin, J. D. (1959) Nature 184, BA58-BA59
15. Cadet, J., Berger, M., Decarroz, C., Wagner, J. R., Van Lier, J. E., Ginot, Y. M., and Vigny, P. (1986) Biochimie (Paris) 68, 813-834
16. Cathcart, R., Schniers, E., Saul, R. L., and Ames, B. N. (1984) Proc. Natl. Acad. Sci. U. S. A. 81, 5633-5637
17. Demple, B., and Linn, S. (1982) Nucleuc Acids Res. 10, 3781-3789
18. Demple, B., and Linn, S. (1982) J. Biol. Chem. 257, 2848-2855
19. Mazumder, A., Gerlt, J. A., Rabow, L., Stubbe, J., and Bolton, P. H. (1988) J. Am. Chem. Soc. 110, 1620-1622
20. Mazumder, A., Gerlt, J. A., Absalon, M. J., Stubbe, J., Cunningham, R. P., Withka, J. M., and Bolton, P. H. (1991) Biochemistry 30, 1119-1126
21. Hilbert, T. P., Boorstein, R. J., Kung, H. C., Bolton, P. H., Xing, D., Cunningham, R. P., and Teebor, G. W. (1996) Biochemistry 35, 2505-2511
22. Hayes, R. C., Petrullo, L. A., Huang, H., Wallace, S. S., and LeClerc, J. E. (1988) J. Mol. Biol. 201, 239-246
23. Basu, A. K., Loechler, E. L., Leadon, S. A., and Essigmann, J. M. (1989) Proc. Natl. Acad. Sci. U. S. A. 86, 7677-7681
24. Clark, J. M., and Beardsley, G. P. (1986) Nucleic Acids Res. 14, 737-749
25. Hayes, R. C., and LeClerc, J. E. (1986) Nucleic Acids Res. 14, 1045-1061
26. Ide, H., Kow, Y. W., and Wallace, S. S. (1985) Nucleic Acids Res. 13, 8035-8052
27. Rouet, P., and Essigmann, J. M. (1985) Cancer Res. 45, 6113-6118
28. Iida, S., and Hayatsu, H. (1970) Biochim. Biophys. Acta 213, 1-13
29. Kao, J. Y., Goljer, I., Phan, T. A., and Bolton, P. H. (1993) J. Biol. Chem. 268, 17787-17793
30. Weinfeld, M., Soderlind, K.-J. M., and Buchko, G. W. (1993) Nucleic Acids Res. 21, 621-626
31. Young, M. A., Goljer, I., and Bolton, P. H. (1995) Methods Enzymol. 261, 121-144
32. Goljer, I., Kumar, S., and Bolton, P. H. (1995) J. Biol. Chem. 39, 22980-22987
33. Marathias, V., Wang, K. Y., Pham, T. Q., Swaminathan, S., and Bolton, P. H. (1996) J. Mol. Biol. 260, 378-394
34. Kung, H. C., Parker, S. A., Wang, K. Y., and Bolton, P. H. (1996) Magn. Reson. Chem. 00, 000-000
35. Withka, J. M., Srinivasan, J., and Bolton, P. H. (1992) J. Magn. Reson. 98, 611-616
36. Clore, G. M., and Gronenborn, A. M. (1989) CRC Crit. Rev. Biochem. Mol. Biol. 24, 479-564
37. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York
38. Joshua-Tor, L., Rabinovich, D., Hope, H., Frolow, F., Apella, E., and Sussman, J. L. (1988) Nature 334, 82-84
39. Miller, M., Harrison, R. W., Woldawer, A., Appella, E., and Sussman, J. L. (1988) Nature 334, 85-86
40. Nikonowicz, E., Roongta, V., Jones, C. R., and Gorenstein, D. G. (1989) Biochemistry 28, 8714-8725
41. Ninkowski, E. P., Meadows, R. P., and Gorenstein, D. G. (1990) Biochemistry 29, 8714-8725
42. Morden, K. M., Chu, Y. G., Martin, F. H., and Tinoco, I., Jr. (1983) Biochemistry 22, 5557-5563
43. Morden, K. M., Gunn, B. M., and Maskos, K. (1990) Biochemistry 29, 8835-8845
44. Hare, D., Shapiro, L., and Patel, D. J. (1986) Biochemistry 25, 7456-7464
45. Kalnick, M. W., Norman, D. G., Zagorski, M. G., Swann, P. F., and Patel, D. J. (1989) Biochemistry 28, 294-303
46. Resinisch, K. M., Chen, L., Verdine, G. L., and Lipscomb, W. N. (1995) Cell 82, 143-153