Analysis of mammalian cis-regulatory DNA elements by homologous recombination

Methods in Enzymology

Volumn 306, Issue , 1999, Pages 42-66

  Fiering, Steven ^a   Bender, M A ^a   Groudine, Mark ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; DNA BINDING PROTEIN; RECOMBINASE;

ARTICLE; CONTROLLED STUDY; DNA MODIFICATION; EXPERIMENTAL MODEL; GENE CASSETTE; GENE CONTROL; GENE INSERTION; GENETIC ENGINEERING; GENETIC RECOMBINATION; MARKER GENE; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN EXPRESSION; SITE DIRECTED MUTAGENESIS; TRANSCRIPTION REGULATION;

MAMMALIA;

EID: 0032768781     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(99)06005-X     Document Type: Article

References (81)

1. P. J. Laybourn and J. T. Kadonaga, Science 257, 1682 (1992).
2. D. H. Tuan, W. B. Solomon, I. M. London, and D. P. Lee, Proc. Natl. Acad. Sci. U.S.A. 86, 2554 (1989).
3. W. C. Forrester, U. Novak, R. Gelinas, and M. Groudine, Proc. Natl. Acad. Sci. U.S.A. 86, 5439 (1989).
4. P. Fraser, J. Hurst, P. Collis, and F. Grosveld, Nucleic Acids Res. 18, 3503 (1990).
5. A. M. Moon and T. J. Ley, Blood 77, 2272 (1991).
6. B. A. Hug, A. M. Moon, and T. J. Ley, Nucleic Acids Res. 20, 5771 (1992).
7. L. Madisen and M. Groudine, Genes Dev. 8, 2212 (1994).
8. R. Festenstein, M. Tolaini, P. Corbella, C. Mamalaki, J. Parrington, M. Fox, A. Miliou, M. Jones, and D. Kioussis, Science 271, 1123 (1996).
9. A. Stief, D. Winter, W. Stratling, and A. Sippel, Nature 341, 343 (1989).
10. D. Schubeler, C. Mielke, K. Maass, and J. Bode, Biochemistry 35, 11160 (1996).
11. W. Forrester, C. van Genderen, T. Jenuwein, and R. Grosschedl, Science 265, 1221 (1994).
12. E. Milot, J. Stroubolis, T. Trimborn, M. Wijgerde, E. de Boer, A. Langeveld, K. Tan-un, W. Vergeer, N. Yannoutsos, F. Grosveld, and P. Fraser, Cell 87, 105 (1996).
13. J. Ellis, K. Tan-un, A. Harper, D. Michalovich, N. Yannoutsos, S. Philipsen, and F. Grosveld, EMBO J. 15, 562 (1996).
14. D. Garrick, S. Fiering, D. Martin, and E. Whitelaw, Nature Genet. 18, 56 (1998).
15. K. M. Gaensler, N. Kitamura, and K. Y. W., Proc. Natl. Acad. Sci. U.S.A. 90, 11381 (1993).
16. J. Strouboulis, N. Dillon, and F. Grosveld, Genes Dev. 6, 1857 (1992).
17. K. R. Peterson, C. H. Clegg, C. Huxley, B. M. Josephson, H. S. Haugen, T. Furukawa, and G. Stamatoyannopoulos, Proc. Natl. Acad. Sci. U.S.A. 90, 7593 (1993).
18. S. Porcu, M. Kitamura, E. Witkowska, Z. Zhang, A. Mutero, C. Lin, J. Chang, and K. Gaensler, Blood 90, 4602 (1997).
19. J. Brown, W. Wei, and J. Sedivy, Science 277, 831 (1997).
20. S. Williams, F. Ousley, L. Vitez, and R. DuBridge, Proc. Natl. Acad. Sci. U.S.A. 91, 11943 (1994).
21. J. M. Buerstedde and S. Takeda, Cell 67, 179 (1991).
22. H. Zheng and J. Wilson, Nature 344, 170 (1990).
23. R. Mortensen, D. Conner, S. Chao, A. Geisterfer-Lowrance, and J. G. Seidman, Mol. Cell. Biol. 12, 2391 (1992).
24. A. Oancea and M. Shulman, Int. Immunol. 6, 1161 (1994).
25. A. Oancea, M. Berru, and M. Shulman, Mol. Cell. Biol. 17, 2658 (1997).
26. C. G. Kim, E. M. Epner, W. C. Forrester, and M. Groudine, Genes Dev. 6, 928 (1992).
27. S. Fiering, C. G. Kim, E. E. Epner, and M. G. Groudine, Proc. Natl. Acad. Sci. U.S.A. 90, 8469 (1993).
28. E. Dicken, E. Epner, S. Fiering, R. E. K. Fournier, and M. Groudine, Nature Genet. 12, 174 (1996).
29. S. Fiering, E. Epner, K. Robinson, Y. Zhuang, A. Telling, M. Hu, D. I. K. Martin, T. Enver, T. Ley, and M. Groudine, Genes Dev. 9, 2203 (1995).
30. B. Hug, R. L. Wesselschmidt, S. Fiering, M. A. Bender, M. Groudine, and T. J. Ley, Mol. Cell. Biol. 16, 2906 (1996).
31. A. Reik, A. Telling, G. Zitnik, D. Cimbora, E. Epner, and M. Groudine, Mol. Cell. Biol. 18, 5992 (1998).
32. K. Tomizuka, H. Yoshida, H. Uejima, H. Kugoh, K. Sato, A. Ohguma, M. Hayasaka, K. Hanaoka, M. Oshimura, and I. Ishida, Nature Genet. 16, 133 (1997).
33. C. Pham, D. MacIvor, B. Hug, J. Heusel, and T. Ley, Proc. Natl. Acad. Sci. U.S.A. 93, 13090 (1996).
34. J. Bories, J. Demengeot, L. Davidson, and F. Alt, Proc. Natl. Acad. Sci. U.S.A. 93, 7871 (1996).
35. J. Gorman, N. van der Stoep, R. Monroe, M. Cogne, L. Davidson, and F. Alt, Immunity 4, 241 (1996).
36. Y. Xu, L. Davidson, F. Alt, and D. Baltimore, Immunity 4, 377 (1996).
37. R. Shivdasani, Y. Fujiwara, M. McDevitt, and S. Orkin, EMBO J. 16, 3965 (1997).
38. J. Chen Young, F. A. Bottaro, V. Stewart, R. Smith, and F. Alt, EMBO J. 12, 4635 (1993).
39. S. Takeda, Y. Zou, H. Bluethmann, D. Kitamura, U. Muller, and K. Rajewsky, EMBO J. 12, 2329 (1993).
40. A. Bernet, personal communication, 1997.
41. E. Olson, H. Arnold, P. Rigby, and B. Wold, Cell 85, 1 (1996).
42. A. Leder, C. Daugherty, B. Whitney, and P. Leder, Blood 90, 1275 (1997).
43. G. Bouvier, F. Watrin, M. Naspetti, C. Verthuy, P. Naquet, and P. Ferrier, Proc. Natl. Acad. Sci. U.S.A. 93, 7877 (1996).
44. M. Bender, S. Fiering, and M. Groudine, manuscript in preparation, 1999.
45. P. Sieh and J. Chen, personal communication, 1997.
46. N. Templeton, D. Roberts, and M. Safer, Gene Ther. 4, 700 (1997).
47. N. J. Kilby, M. R. Snaith, and J. A. H. Murray, Trends Genet. 9, 413 (1993).
48. F. Bucholz, L. Ringrose, P. Angrand, F. Rossi, and A. Stewart, Nucleic Acids Res. 24, 4256 (1996).
49. S. O'Gorman, D. T. Fox, and G. M. Wahl, Science 251, 1351 (1991).
50. S. Dymecki, Proc. Natl. Acad. Science U.S.A. 93, 6191 (1996).
51. M. Lakso, J. Pichel, J. Gorman, B. Sauer, Y. Okamoto, E. Lee, F. Alt, and H. Westphal, Proc. Natl. Acad. Sci. U.S.A. 93, 5860 (1996).
52. P. Orban, D. Chui, and J. Marth, Proc. Natl. Acad. Sci. U.S.A. 89, 6861 (1992).
53. F. Schwenk, U. Baron, and K. Rajewsky, Nucleic Acids Res. 23, 5080 (1995).
54. H. Gu, Y. R. Zou, and K. Rajewsky, Cell 73, 1155 (1993).
55. S. Jung, K. Rajewsky, and A. Radbruch, Science 259, 984 (1993).
56. L. Ferradini, H. Gu, A. De Smet, K. Rejewsky, C. Reynaud, and J. Weill, Science 271, 1416 (1996).
57. S. van den Heuvel and E. Harlow, Science 262, 2050 (1993).
58. E. Bouhassira, K. Westerman, and P. Leboulch, Blood 90, 3332 (1997).
59. B. Sauer, J. Mol. Biol. 223, 911 (1992).
60. A. Nagy, C. Moens, E. Ivanyi, P. J, M. Gertsenstein, A. Hadjantonakis, M. Pirity, and J. Rossant, Curr. Biol. 8, 661 (1998).
61. K. Araki, M. Araki, J. Miyazaki, and P. Vassalli, Proc. Natl. Acad. Sci. U.S.A. 92, 160 (1995).
62. V. Valancius and O. Smithies, Mol. Cell. Biol. 11, 1402 (1991).
63. P. Hasty, R. Ramiriez-Solis, R. Krumlauf, and A. Bradley, Nature 350, 243 (1991).
64. R. Ramirez-solis, J. Zheng, J. Whiting, R. Krumlauf, and A. Bradley, Cell 73, 279 (1991).
65. M. Serwe and F. Sablitzky, EMBO J. 12, 2321 (1993).
66. G. Askew, T. Doetchman, and J. Lingrel, Mol. Cell. Biol. 13, 4115 (1993).
67. H. Wu, X. Liu, and R. Jaenisch, Proc. Natl. Acad. Sci. U.S.A. 91, 2819 (1994).
68. A. Stacey, A. Schnieke, J. McWhir, J. Cooper, A. Colman, and D. Melton, Mol. Cell Biol. 14, 1009 (1994).
69. J. Seibler, D. Schubeler, S. Fiering, M. Groudine, and J. Bode, Biochemistry 37, 6229 (1998).
70. R. Al-Shawi, J. Burke, H. Wallace, C. Jones, S. Harrison, D. Buxton, S. Maley, A. Chandley, and J. Bishop, Mol. Cell. Biol. 11, 4207 (1991).
71. P. Detloff, J. Lewis, S. John, W. R. Shehee, R. Langenbach, N. Maeda, and O. Smithies, Mol. Cell. Biol. 14, 6936 (1994).
72. J. Lewis, B. Yang, P. Detloff, and O. Smithies, J. Clin. Invest. 97, 3 (1996).
73. R. Kucherlapati, E. Eves, K. Song, B. Morse, and O. Smithies, Proc. Natl. Acad. Sci. U.S.A. 81, 3153 (1984).
74. O. Smithies, M. Koralewski, K. Song, and R. Kucherlapati, Cold Spring Harb. Symp. Quant. Biol. 49, 161 (1984).
75. J. Rabinowitz and T. Magnuson, Anal. Biochem. 228, 180 (1995).
76. B. Sauer and N. Henderson, New Biol. 2, 441 (1990).
77. T. Schlake and J. Bode, Biochemistry 33, 12746 (1994).
78. J. Seibler and J. Bode, Biochemistry 36, 1740 (1997).
79. B. Bethke and B. Sauer, Nucleic Acids Res. 25, 2828 (1997).
80. J. Senecoff and M. Cox, J. Biol. Chem. 261, 7380 (1986).
81. R. Hoess, A. Wierzbicki, and K. Abremski, Nucleic Acids Res. 14, 2287 (1986).