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Volumn 5, Issue 8, 1999, Pages 1119-1129

In vitro selection of RNAs with increased tertiary structure stability

Author keywords

Magnesium ion; Nondenaturing gel electrophoresis; Ribozyme; RNA folding

Indexed keywords

MAGNESIUM ION; RIBOZYME; RNA;

EID: 0032842642     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S135583829999074X     Document Type: Article
Times cited : (38)

References (35)
  • 1
    • 0025942059 scopus 로고
    • A thermodynamic study of unusually stable RNA and DNA hairpins
    • Antao VP, Lai SY, Tinoco I Jr. 1991. A thermodynamic study of unusually stable RNA and DNA hairpins. Nucleic Acids Res 21:5901-5905.
    • (1991) Nucleic Acids Res , vol.21 , pp. 5901-5905
    • Antao, V.P.1    Lai, S.Y.2    Tinoco I., Jr.3
  • 2
    • 0027488624 scopus 로고
    • Isolation of new ribozymes from a large pool of random sequences
    • Bartel DP, Szostak JW. 1993. Isolation of new ribozymes from a large pool of random sequences. Science 261:1411-1418.
    • (1993) Science , vol.261 , pp. 1411-1418
    • Bartel, D.P.1    Szostak, J.W.2
  • 3
    • 0026045893 scopus 로고
    • HIV-1 rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA
    • Bartel DP, Zapp ML, Green MR, Szostak JW. 1991. HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA. Cell 67:529-536.
    • (1991) Cell , vol.67 , pp. 529-536
    • Bartel, D.P.1    Zapp, M.L.2    Green, M.R.3    Szostak, J.W.4
  • 4
    • 0026649231 scopus 로고
    • Directed evolution of an RNA enzyme
    • Beaudry AA, Joyce GF. 1992. Directed evolution of an RNA enzyme. Science 257:635-641.
    • (1992) Science , vol.257 , pp. 635-641
    • Beaudry, A.A.1    Joyce, G.F.2
  • 5
    • 0032506045 scopus 로고    scopus 로고
    • Thermodynamic analysis of an RNA combinatorial library contained in a short hairpin
    • Bevilacqua JM, Bevilacqua PC. 1998. Thermodynamic analysis of an RNA combinatorial library contained in a short hairpin. Biochemistry 37:15877-15884.
    • (1998) Biochemistry , vol.37 , pp. 15877-15884
    • Bevilacqua, J.M.1    Bevilacqua, P.C.2
  • 6
    • 0031463994 scopus 로고    scopus 로고
    • Solution structure of a GAAA tetraloop receptor RNA
    • Butcher SE, Dieckmann T, Feigon J. 1997. Solution structure of a GAAA tetraloop receptor RNA. EMBO J 16:7490-7499.
    • (1997) EMBO J , vol.16 , pp. 7490-7499
    • Butcher, S.E.1    Dieckmann, T.2    Feigon, J.3
  • 7
    • 0029348716 scopus 로고
    • Identification of ribozymes within a ribozyme library that efficiently cleave a long substrate RNA
    • Campbell TB, Cech TR. 1995. Identification of ribozymes within a ribozyme library that efficiently cleave a long substrate RNA. RNA 1:598-609.
    • (1995) RNA , vol.1 , pp. 598-609
    • Campbell, T.B.1    Cech, T.R.2
  • 9
    • 0028921811 scopus 로고
    • Frequent use of the same tertiary motif by self-folding RNAs
    • Costa M, Michel F. 1995. Frequent use of the same tertiary motif by self-folding RNAs. EMBO J 14:1276-1285.
    • (1995) EMBO J , vol.14 , pp. 1276-1285
    • Costa, M.1    Michel, F.2
  • 10
    • 0030959348 scopus 로고    scopus 로고
    • Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: Comparison with in vivo evolution
    • Costa M, Michel F. 1997. Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: Comparison with in vivo evolution. EMBO J 16:3289-3302.
    • (1997) EMBO J , vol.16 , pp. 3289-3302
    • Costa, M.1    Michel, F.2
  • 11
    • 0029258956 scopus 로고
    • Self-assembly of a group I intron active site from its component tertiary structural domains
    • Doudna JA, Cech TR. 1995. Self-assembly of a group I intron active site from its component tertiary structural domains. RNA 1:36-45.
    • (1995) RNA , vol.1 , pp. 36-45
    • Doudna, J.A.1    Cech, T.R.2
  • 12
    • 0028941645 scopus 로고
    • Selection of an RNA molecule that mimics a major autoantigenic epitope of human insulin receptor
    • Doudna JA, Cech TR, Sullenger BA. 1995. Selection of an RNA molecule that mimics a major autoantigenic epitope of human insulin receptor. Proc Natl Acad Sci USA 92:2355-2359.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 2355-2359
    • Doudna, J.A.1    Cech, T.R.2    Sullenger, B.A.3
  • 13
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington AD, Szostak JW. 1990. In vitro selection of RNA molecules that bind specific ligands. Nature 346:818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 14
    • 0032500731 scopus 로고    scopus 로고
    • A preorganized active site in the crystal structure of the Tetrahymena ribozyme
    • Golden BL, Gooding AR, Podell ER, Cech TR. 1998. A preorganized active site in the crystal structure of the Tetrahymena ribozyme. Science 282:259-264.
    • (1998) Science , vol.282 , pp. 259-264
    • Golden, B.L.1    Gooding, A.R.2    Podell, E.R.3    Cech, T.R.4
  • 15
    • 0027958767 scopus 로고
    • In vitro genetic analysis of the hinge region between helical elements P5-P4-P6 and P7-P3-P8 in the sunY group I self-splicing intron
    • Green R, Szostak JW. 1994. In vitro genetic analysis of the hinge region between helical elements P5-P4-P6 and P7-P3-P8 in the sunY group I self-splicing intron. J Mol Biol 235:140-155.
    • (1994) J Mol Biol , vol.235 , pp. 140-155
    • Green, R.1    Szostak, J.W.2
  • 17
    • 0021991295 scopus 로고
    • Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: A technique for RNA structure analysis using chemical probes and reverse transcriptase
    • lnoue T, Cech TR. 1985. Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: A technique for RNA structure analysis using chemical probes and reverse transcriptase. Proc Natl Acad Sci USA 82:648-652.
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 648-652
    • Lnoue, T.1    Cech, T.R.2
  • 18
    • 0031731440 scopus 로고    scopus 로고
    • In vitro selection of the Naegleria GIR1 ribozyme identifies three base changes that dramatically improve activity
    • Jabri E, Cech TR. 1998. In vitro selection of the Naegleria GIR1 ribozyme identifies three base changes that dramatically improve activity. RNA 4:1481-1492.
    • (1998) RNA , vol.4 , pp. 1481-1492
    • Jabri, E.1    Cech, T.R.2
  • 19
    • 0028224199 scopus 로고
    • High-resolution molecular discrimination by RNA
    • Jenison R, Gill SC, Pardi A, Polisky B. 1994. High-resolution molecular discrimination by RNA. Science 263:1425-1429.
    • (1994) Science , vol.263 , pp. 1425-1429
    • Jenison, R.1    Gill, S.C.2    Pardi, A.3    Polisky, B.4
  • 20
    • 0030596092 scopus 로고    scopus 로고
    • A network of heterogeneous hydrogen bonds in GNRA tetraloops
    • Jucker FM, Heus HA, Yip PF, Moors EH, Pardi A. 1996. A network of heterogeneous hydrogen bonds in GNRA tetraloops. J Mol Biol 264:968-980.
    • (1996) J Mol Biol , vol.264 , pp. 968-980
    • Jucker, F.M.1    Heus, H.A.2    Yip, P.F.3    Moors, E.H.4    Pardi, A.5
  • 21
    • 0028866812 scopus 로고
    • Solution structure of the CUUG hairpin loop: A novel RNA tetraloop motif
    • Jucker FM, Pardi A. 1995. Solution structure of the CUUG hairpin loop: A novel RNA tetraloop motif. Biochemistry 34:14416-14427.
    • (1995) Biochemistry , vol.34 , pp. 14416-14427
    • Jucker, F.M.1    Pardi, A.2
  • 22
    • 0027525989 scopus 로고
    • Evolution in vitro of an RNA enzyme with altered metal dependence
    • Lehman N, Joyce GF. 1993. Evolution in vitro of an RNA enzyme with altered metal dependence. Nature 361:182-185.
    • (1993) Nature , vol.361 , pp. 182-185
    • Lehman, N.1    Joyce, G.F.2
  • 23
    • 0027173193 scopus 로고
    • An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme
    • Murphy FL, Cech TR. 1993. An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme. Biochemistry 32:5291-5300.
    • (1993) Biochemistry , vol.32 , pp. 5291-5300
    • Murphy, F.L.1    Cech, T.R.2
  • 24
    • 0028301674 scopus 로고
    • GAAA tetraloop and conserved bulge stabilize tertiary structure of a group i intron domain
    • Murphy FL, Cech TR. 1994. GAAA Tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain. J Mol Biol 236:49-63.
    • (1994) J Mol Biol , vol.236 , pp. 49-63
    • Murphy, F.L.1    Cech, T.R.2
  • 25
    • 0027985820 scopus 로고
    • Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme
    • Murphy FL, Wang YH, Griffith JD, Cech TR. 1994. Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme. Science 265:1709-1712.
    • (1994) Science , vol.265 , pp. 1709-1712
    • Murphy, F.L.1    Wang, Y.H.2    Griffith, J.D.3    Cech, T.R.4
  • 27
    • 0028037302 scopus 로고
    • Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix
    • Pley HW, Flaherty KM, McKay DB. 1994. Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix. Nature 372:111-113.
    • (1994) Nature , vol.372 , pp. 111-113
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 28
    • 0026562625 scopus 로고
    • Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin
    • SantaLucia J Jr, Kierzek R, Turner DH. 1992. Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin. Science 256:217-219.
    • (1992) Science , vol.256 , pp. 217-219
    • Santalucia J., Jr.1    Kierzek, R.2    Turner, D.H.3
  • 29
    • 0030761966 scopus 로고    scopus 로고
    • An RNA internal loop acts as a hinge to facilitate ribozyme folding and catalysis
    • Szewczak AA, Cech TR. 1997. An RNA internal loop acts as a hinge to facilitate ribozyme folding and catalysis. RNA 3:838-849.
    • (1997) RNA , vol.3 , pp. 838-849
    • Szewczak, A.A.1    Cech, T.R.2
  • 30
    • 0030866522 scopus 로고    scopus 로고
    • Mutagenesis and comparative sequence analysis of a base triple joining the two domains of group I ribozymes
    • Tanner MA, Anderson EM, Gutell RR, Cech TR. 1997. Mutagenesis and comparative sequence analysis of a base triple joining the two domains of group I ribozymes. RNA 3:1037-1051.
    • (1997) RNA , vol.3 , pp. 1037-1051
    • Tanner, Ma.1    Anderson, E.M.2    Gutell, R.R.3    Cech, T.R.4
  • 31
    • 0032549735 scopus 로고    scopus 로고
    • Kinetic intermediates trapped by native interactions in RNA folding
    • Treiber DK, Rook MS, Zarrinkar PP, Williamson JR. 1998. Kinetic intermediates trapped by native interactions in RNA folding. Science 279:1943-1946.
    • (1998) Science , vol.279 , pp. 1943-1946
    • Treiber, D.K.1    Rook, M.S.2    Zarrinkar, P.P.3    Williamson, J.R.4
  • 32
    • 0025194307 scopus 로고
    • Systematic evolution of ligands to bacteriophage T4 DNA polymerase
    • Tuerk C, Gold L. 1990. Systematic evolution of ligands to bacteriophage T4 DNA polymerase. Science 249:505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 33
    • 0025047647 scopus 로고
    • Architecture of ribosomal RNA: Constraints on the sequence of "tetra-loops"
    • Woese CR, Winker S, Gutell RR. 1990. Architecture of ribosomal RNA: Constraints on the sequence of "tetra-loops". Proc Natl Acad Sci USA 87:8467-8471.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 8467-8471
    • Woese, C.R.1    Winker, S.2    Gutell, R.R.3
  • 34
    • 0029312758 scopus 로고
    • Analysis of the structure of Tetrahymena nuclear RNAs in vivo: Telomerase RNA, the self-splicing rRNA intron, and U2 snRNA
    • Zaug AJ, Cech TR. 1995. Analysis of the structure of Tetrahymena nuclear RNAs in vivo: Telomerase RNA, the self-splicing rRNA intron, and U2 snRNA. RNA 1:363-374.
    • (1995) RNA , vol.1 , pp. 363-374
    • Zaug, A.J.1    Cech, T.R.2
  • 35
    • 0030688863 scopus 로고    scopus 로고
    • Peptide bond formation by in vitro selected ribozymes
    • Zhang B, Cech TR. 1997. Peptide bond formation by in vitro selected ribozymes. Nature 390:96-100.
    • (1997) Nature , vol.390 , pp. 96-100
    • Zhang, B.1    Cech, T.R.2


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