-
1
-
-
0030596508
-
Sequence variation as a strategy for crystallizing RNA motifs
-
Anderson A. C., Earp B. E., Frederick C. A. Sequence variation as a strategy for crystallizing RNA motifs. J. Mol. Biol. 259:1996;696-703.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 696-703
-
-
Anderson, A.C.1
Earp, B.E.2
Frederick, C.A.3
-
2
-
-
0027974580
-
Use of low-molecular-weight polyethylene glycol in the crystallization of RNA oligomers
-
Baeyens K. J., Jancarik J., Holbrook S. R. Use of low-molecular-weight polyethylene glycol in the crystallization of RNA oligomers. Acta Crystallog. sect. D. 50:1994;764-767.
-
(1994)
Acta Crystallog. Sect. D
, vol.50
, pp. 764-767
-
-
Baeyens, K.J.1
Jancarik, J.2
Holbrook, S.R.3
-
3
-
-
0027434244
-
Thermal unfolding of a group I ribozyme: The low-temperature transition is primarily disruption of tertiary structure
-
Banerjee A. R., Jaeger J. A., Turner D. H. Thermal unfolding of a group I ribozyme: The low-temperature transition is primarily disruption of tertiary structure. Biochemistry. 32:1993;153-163.
-
(1993)
Biochemistry
, vol.32
, pp. 153-163
-
-
Banerjee, A.R.1
Jaeger, J.A.2
Turner, D.H.3
-
4
-
-
0024025172
-
Deletion of nonconserved helices near the 3′ end of the rRNA intron of Tetrahymena thermophila alters self-splicing but not core catalytic activity
-
Barfod E. T., Cech T. R. Deletion of nonconserved helices near the 3′ end of the rRNA intron of Tetrahymena thermophila alters self-splicing but not core catalytic activity. Genes Dev. 2:1988;652-663.
-
(1988)
Genes Dev.
, vol.2
, pp. 652-663
-
-
Barfod, E.T.1
Cech, T.R.2
-
5
-
-
0023651204
-
Selection of circularization sites in a group I IVS RNA requires multiple alignments of an internal template-like sequence
-
Been M. D., Cech T. R. Selection of circularization sites in a group I IVS RNA requires multiple alignments of an internal template-like sequence. Cell. 50:1987;951-961.
-
(1987)
Cell
, vol.50
, pp. 951-961
-
-
Been, M.D.1
Cech, T.R.2
-
6
-
-
0025128877
-
A 3′ splice site-binding sequence in the catalytic core of a group I intron
-
Burke J. M., Esherick J. S., Burfeind W. R., King J. L. A 3′ splice site-binding sequence in the catalytic core of a group I intron. Nature. 344:1990;80-81.
-
(1990)
Nature
, vol.344
, pp. 80-81
-
-
Burke, J.M.1
Esherick, J.S.2
Burfeind, W.R.3
King, J.L.4
-
7
-
-
0029820625
-
Crystal structure of a group I ribozyme domain reveals principles of higher order RNA packing
-
Cate J. H., Gooding A. R., Podell E., Zhou K., Golden B. L., Kundrot C. E., Cech T. R., Doudna J. A. Crystal structure of a group I ribozyme domain reveals principles of higher order RNA packing. Science. 273:1996;1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
8
-
-
0026756717
-
RNA catalysis by a group I ribozyme. Developing a model for transition state stabilization
-
Cech T. R., Herschlag D., Piccirilli J. A., Pyle A. M. RNA catalysis by a group I ribozyme. Developing a model for transition state stabilization. J. Biol. Chem. 267:1992;17479-17482.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 17479-17482
-
-
Cech, T.R.1
Herschlag, D.2
Piccirilli, J.A.3
Pyle, A.M.4
-
9
-
-
0028921811
-
Frequent use of the same tertiary motif by self-folding RNAs
-
Costa M., Michel F. Frequent use of the same tertiary motif by self-folding RNAs. EMBO J. 14:1995;1276-1285.
-
(1995)
EMBO J.
, vol.14
, pp. 1276-1285
-
-
Costa, M.1
Michel, F.2
-
10
-
-
0025123358
-
Mutational analysis of conserved nucleotides in a self-splicing group I intron
-
Couture S., Ellington A. D., Gerber A. S., Cherry J. M., Doudna J. A., Green R., Hanna M., Pace U., Rajagopal J., Szostak J. W. Mutational analysis of conserved nucleotides in a self-splicing group I intron. J. Mol. Biol. 215:1990;345-350.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 345-350
-
-
Couture, S.1
Ellington, A.D.2
Gerber, A.S.3
Cherry, J.M.4
Doudna, J.A.5
Green, R.6
Hanna, M.7
Pace, U.8
Rajagopal, J.9
Szostak, J.W.10
-
12
-
-
0020469973
-
Making ends meet: A model for RNA splicing in fungal mitochondria
-
Davies R. W., Waring R. B., Ray J. A., Brown T. A., Scazzocchio C. Making ends meet: A model for RNA splicing in fungal mitochondria. Nature. 300:1982;719-724.
-
(1982)
Nature
, vol.300
, pp. 719-724
-
-
Davies, R.W.1
Waring, R.B.2
Ray, J.A.3
Brown, T.A.4
Scazzocchio, C.5
-
14
-
-
0025371287
-
An ultraviolet-inducible adenosine-adenosine cross-link reflects the catalytic structure of the Tetrahymena ribozyme
-
Downs W. D., Cech T. R. An ultraviolet-inducible adenosine-adenosine cross-link reflects the catalytic structure of the Tetrahymena ribozyme. Biochemistry. 29:1990;5605-5613.
-
(1990)
Biochemistry
, vol.29
, pp. 5605-5613
-
-
Downs, W.D.1
Cech, T.R.2
-
15
-
-
0028302627
-
A tertiary interaction in the Tetrahymena intron contributes to selection of the 5′ splice site
-
Downs W. D., Cech T. R. A tertiary interaction in the Tetrahymena intron contributes to selection of the 5′ splice site. Genes Dev. 8:1994;1198-1211.
-
(1994)
Genes Dev.
, vol.8
, pp. 1198-1211
-
-
Downs, W.D.1
Cech, T.R.2
-
16
-
-
0030760922
-
Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing
-
Einvik C., Decatur W. A., Embley T. M., Vogt V. M., Johansen S. Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing. RNA. 3:1997;in the press.
-
(1997)
RNA
, vol.3
-
-
Einvik, C.1
Decatur, W.A.2
Embley, T.M.3
Vogt, V.M.4
Johansen, S.5
-
17
-
-
0029856189
-
X-ray crystallography of large RNAs: Heavy-atom derivatives by RNA engineering
-
Golden B. L., Gooding A. R., Podell E. R., Cech T. R. X-ray crystallography of large RNAs: heavy-atom derivatives by RNA engineering. RNA. 2:1996;1295-1305.
-
(1996)
RNA
, vol.2
, pp. 1295-1305
-
-
Golden, B.L.1
Gooding, A.R.2
Podell, E.R.3
Cech, T.R.4
-
18
-
-
0025817050
-
A hammerhead ribozyme allows synthesis of a new form of the Tetrahymena ribozyme homogeneous in length with a 3′ end blocked for transesterification
-
Grosshans C. A., Cech T. R. A hammerhead ribozyme allows synthesis of a new form of the Tetrahymena ribozyme homogeneous in length with a 3′ end blocked for transesterification. Nucl. Acids Res. 19:1991;3875-3880.
-
(1991)
Nucl. Acids Res.
, vol.19
, pp. 3875-3880
-
-
Grosshans, C.A.1
Cech, T.R.2
-
19
-
-
0021991295
-
Secondary structure of the circular form of Tetrahymena rRNA intervening sequence: A technique for RNA structure analysis using chemical probes and reverse transcriptase
-
Inoue T., Cech T. R. Secondary structure of the circular form of Tetrahymena rRNA intervening sequence: A technique for RNA structure analysis using chemical probes and reverse transcriptase. Proc. Natl Acad. Sci. USA. 82:1985;648-652.
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 648-652
-
-
Inoue, T.1
Cech, T.R.2
-
20
-
-
0016146021
-
Three-dimensional tertiary structure of yeast phenylalanine transfer RNA
-
Kim S. H., Suddath F. L., Quigley G. J., McPherson A., Sussman J. L., Wang A. H., Seeman N. C., Rich A. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA. Science. 185:1974;435-440.
-
(1974)
Science
, vol.185
, pp. 435-440
-
-
Kim, S.H.1
Suddath, F.L.2
Quigley, G.J.3
McPherson, A.4
Sussman, J.L.5
Wang, A.H.6
Seeman, N.C.7
Rich, A.8
-
21
-
-
0028239266
-
Two major tertiary folding transitions of the Tetrahymena catalytic RNA
-
Laggerbauer B., Murphy F. L., Cech T. R. Two major tertiary folding transitions of the Tetrahymena catalytic RNA. EMBO J. 13:1994;2669-2676.
-
(1994)
EMBO J.
, vol.13
, pp. 2669-2676
-
-
Laggerbauer, B.1
Murphy, F.L.2
Cech, T.R.3
-
22
-
-
0024359787
-
Defining the inside and outside of a catalytic RNA molecule
-
Latham J. A., Cech T. R. Defining the inside and outside of a catalytic RNA molecule. Science. 245:1989;276-282.
-
(1989)
Science
, vol.245
, pp. 276-282
-
-
Latham, J.A.1
Cech, T.R.2
-
23
-
-
0030452773
-
New loop-loop tertiary interactions in self-splicing introns of the subgroup IC and ID: A complete 3D model f theTetrahymena thermophila ribozyme
-
Lehnert V., Jaeger L., Michel F., Westhof E. New loop-loop tertiary interactions in self-splicing introns of the subgroup IC and ID: a complete 3D model f theTetrahymena thermophila ribozyme. Chem. Biol. 3:1996;993-1009.
-
(1996)
Chem. Biol.
, vol.3
, pp. 993-1009
-
-
Lehnert, V.1
Jaeger, L.2
Michel, F.3
Westhof, E.4
-
24
-
-
0027315147
-
Variation and in vitro splicing of group I introns in rRNA genes of Pneumocystis carinii
-
Liu Y., Leibowitz M. J. Variation and in vitro splicing of group I introns in rRNA genes of Pneumocystis carinii. Nucl. Acids Res. 21:1993;2415-2421.
-
(1993)
Nucl. Acids Res.
, vol.21
, pp. 2415-2421
-
-
Liu, Y.1
Leibowitz, M.J.2
-
25
-
-
0029882895
-
Mechanistic investigations of a ribozyme derived from the Tetrahymena group I intron: Insights into catalysis and the second step of splicing
-
Mei R., Herschlag D. Mechanistic investigations of a ribozyme derived from the Tetrahymena group I intron: insights into catalysis and the second step of splicing. Biochemistry. 35:1996;5796-5809.
-
(1996)
Biochemistry
, vol.35
, pp. 5796-5809
-
-
Mei, R.1
Herschlag, D.2
-
26
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel F., Westhof E. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216:1990;585-610.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
27
-
-
0020198881
-
Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure
-
Michel F., Jacquier A., Dujon B. Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure. Biochimie. 64:1982;867-881.
-
(1982)
Biochimie
, vol.64
, pp. 867-881
-
-
Michel, F.1
Jacquier, A.2
Dujon, B.3
-
28
-
-
0024427177
-
The guanosine binding site of the Tetrahymena ribozyme
-
Michel F., Hanna M., Green R., Bartel D. P., Szostak J. W. The guanosine binding site of the Tetrahymena ribozyme. Nature. 342:1989;391-395.
-
(1989)
Nature
, vol.342
, pp. 391-395
-
-
Michel, F.1
Hanna, M.2
Green, R.3
Bartel, D.P.4
Szostak, J.W.5
-
29
-
-
0025134897
-
Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns
-
Michel F., Ellington A. D., Couture S., Szostak J. W. Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns. Nature. 347:1990a;578-580.
-
(1990)
Nature
, vol.347
, pp. 578-580
-
-
Michel, F.1
Ellington, A.D.2
Couture, S.3
Szostak, J.W.4
-
30
-
-
0025312678
-
Mechanism of 3′ splice site selection by the catalytic core of the sunY intron of bacteriophage T4: The role of a novel base-pairing interaction in group I introns
-
Michel F., Netter P., Xu M. Q., Shub D. A. Mechanism of 3′ splice site selection by the catalytic core of the sunY intron of bacteriophage T4: the role of a novel base-pairing interaction in group I introns. Genes. Dev. 4:1990b;777-788.
-
(1990)
Genes. Dev.
, vol.4
, pp. 777-788
-
-
Michel, F.1
Netter, P.2
Xu, M.Q.3
Shub, D.A.4
-
31
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA polymerase
-
Milligan J. F., Uhlenbeck O. C. Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol. 180:1989;51-62.
-
(1989)
Methods Enzymol.
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
32
-
-
0028301674
-
GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain
-
Murphy F. L., Cech T. R. GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain. J. Mol. Biol. 236:1994;49-63.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 49-63
-
-
Murphy, F.L.1
Cech, T.R.2
-
33
-
-
0029100264
-
Relative orientation of RNA helices in a group I ribozyme determined by helix extension electron microscopy
-
Nakamura T. M., Wang Y.-H., Zaug A. J., Griffith J. D., Cech T. R. Relative orientation of RNA helices in a group I ribozyme determined by helix extension electron microscopy. EMBO J. 14:1995;4849-4859.
-
(1995)
EMBO J.
, vol.14
, pp. 4849-4859
-
-
Nakamura, T.M.1
Wang, Y.-H.2
Zaug, A.J.3
Griffith, J.D.4
Cech, T.R.5
-
35
-
-
0028037302
-
Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix
-
Pley H. W., Flaherty K. M., McKay D. B. Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix. Nature. 372:1994;111-113.
-
(1994)
Nature
, vol.372
, pp. 111-113
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
36
-
-
0001571550
-
Autolytic processing of dimeric plant virus satellite RNA
-
Prody G. A., Bakos J. T., Buzayan J. M., Schneider I. R., Bruening G. Autolytic processing of dimeric plant virus satellite RNA. Science. 231:1986;1577-1580.
-
(1986)
Science
, vol.231
, pp. 1577-1580
-
-
Prody, G.A.1
Bakos, J.T.2
Buzayan, J.M.3
Schneider, I.R.4
Bruening, G.5
-
37
-
-
0026729278
-
RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme
-
Pyle A. M., Murphy F. L., Cech T. R. RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme. Nature. 358:1992;123-128.
-
(1992)
Nature
, vol.358
, pp. 123-128
-
-
Pyle, A.M.1
Murphy, F.L.2
Cech, T.R.3
-
38
-
-
0025695458
-
Sequence requirements of the hammerhead RNA self-cleavage reaction
-
Ruffner D. E., Stormo G. D., Uhlenbeck O. C. Sequence requirements of the hammerhead RNA self-cleavage reaction. Biochemistry. 29:1990;10695-10702.
-
(1990)
Biochemistry
, vol.29
, pp. 10695-10702
-
-
Ruffner, D.E.1
Stormo, G.D.2
Uhlenbeck, O.C.3
-
39
-
-
0011080142
-
Crystal structure of a eukaryotic initiator tRNA
-
Schevitz R. W., Podjarny A. D., Krishnamachari N., Hughes J. J., Sigler P. B., Sussman J. L. Crystal structure of a eukaryotic initiator tRNA. Nature. 286:1980;346-351.
-
(1980)
Nature
, vol.286
, pp. 346-351
-
-
Schevitz, R.W.1
Podjarny, A.D.2
Krishnamachari, N.3
Hughes, J.J.4
Sigler, P.B.5
Sussman, J.L.6
-
40
-
-
0029115376
-
Rapid crystallization of chemically synthesized hammerhead RNAs using a double screen procedure
-
Scott W. G., Finch J. T., Grenfell R., Fogg J., Smith T., Gait M. J., Klug A. Rapid crystallization of chemically synthesized hammerhead RNAs using a double screen procedure. J. Mol. Biol. 290:1995;327-332.
-
(1995)
J. Mol. Biol.
, vol.290
, pp. 327-332
-
-
Scott, W.G.1
Finch, J.T.2
Grenfell, R.3
Fogg, J.4
Smith, T.5
Gait, M.J.6
Klug, A.7
-
41
-
-
0024967184
-
A self-splicing intron in the small subunit of rRNA genes of Pneumocystis carinii
-
Sogin M. L., Edman J. C. A self-splicing intron in the small subunit of rRNA genes of Pneumocystis carinii. Nucl. Acids Res. 17:1989;5349-5359.
-
(1989)
Nucl. Acids Res.
, vol.17
, pp. 5349-5359
-
-
Sogin, M.L.1
Edman, J.C.2
-
42
-
-
0028955347
-
Minor groove recognition of the conserved G·U pair at the Tetrahymena ribozyme reaction site
-
Strobel S. A., Cech T. R. Minor groove recognition of the conserved G·U pair at the Tetrahymena ribozyme reaction site. Science. 267:1995;675-679.
-
(1995)
Science
, vol.267
, pp. 675-679
-
-
Strobel, S.A.1
Cech, T.R.2
-
43
-
-
0031025796
-
Joining the two domains of a group I ribozyme to form the catalytic core
-
Tanner M. A., Cech T. R. Joining the two domains of a group I ribozyme to form the catalytic core. Science. 275:1997;847-849.
-
(1997)
Science
, vol.275
, pp. 847-849
-
-
Tanner, M.A.1
Cech, T.R.2
-
44
-
-
0028105774
-
Metal ion dependence of active-site structure of the Tetrahymena ribozyme revealed by site-specific photo-cross-linking
-
Wang J.-F., Cech T. R. Metal ion dependence of active-site structure of the Tetrahymena ribozyme revealed by site-specific photo-cross-linking. J. Am. Chem. Soc. 116:1994;4178-4182.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 4178-4182
-
-
Wang, J.-F.1
Cech, T.R.2
-
45
-
-
0028300137
-
Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy
-
Wang Y.-H., Murphy F. L., Cech T. R., Griffith J. D. Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy. J. Mol. Biol. 236:1994;64-71.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 64-71
-
-
Wang, Y.-H.1
Murphy, F.L.2
Cech, T.R.3
Griffith, J.D.4
-
46
-
-
0024963554
-
Specificity of arginine binding by the Tetrahymena intron
-
Yarus M. Specificity of arginine binding by the Tetrahymena intron. Biochemistry. 28:1989;980-988.
-
(1989)
Biochemistry
, vol.28
, pp. 980-988
-
-
Yarus, M.1
-
47
-
-
0029864990
-
The P9.1-P9.2 peripheral extension helps guide folding of the Tetrahymena ribozyme
-
Zarrinkar P. P., Williamson J. R. The P9.1-P9.2 peripheral extension helps guide folding of the Tetrahymena ribozyme. Nucl. Acids Res. 24:1996;854-858.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 854-858
-
-
Zarrinkar, P.P.1
Williamson, J.R.2
-
48
-
-
0022649937
-
The intervening sequence RNA of Tetrahymena is an enzyme
-
Zaug A. J., Cech T. R. The intervening sequence RNA of Tetrahymena is an enzyme. Science. 231:1986a;470-475.
-
(1986)
Science
, vol.231
, pp. 470-475
-
-
Zaug, A.J.1
Cech, T.R.2
-
49
-
-
0023047642
-
The Tetrahymena intervening sequence ribonucleic acid enzyme is a phosphotransferase and an acid phosphatase
-
Zaug A. J., Cech T. R. The Tetrahymena intervening sequence ribonucleic acid enzyme is a phosphotransferase and an acid phosphatase. Biochemistry. 25:1986b;4478-4482.
-
(1986)
Biochemistry
, vol.25
, pp. 4478-4482
-
-
Zaug, A.J.1
Cech, T.R.2
-
50
-
-
0020673504
-
Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage-ligation reaction
-
Zaug A. J., Grabowski P. J., Cech T. R. Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage-ligation reaction. Nature. 301:1983;578-583.
-
(1983)
Nature
, vol.301
, pp. 578-583
-
-
Zaug, A.J.1
Grabowski, P.J.2
Cech, T.R.3
|