-
1
-
-
84901479153
-
-
GAP32. Virology, DOI 10.1016/j.virol.2014.05.003
-
Abbasifar R, Griffiths MW, Sabour PM, Ackermann H-W, Vandersteegen K, Lavigne R, Noben J-P, Alanis Villa A, Abbasifar A, Nash JHE, Kropinski AM. 2014. Supersize me: Cronobacter sakazakii phage GAP32. Virology 460-461:138-146 DOI 10.1016/j.virol.2014.05.003.
-
(2014)
Supersize Me: Cronobacter Sakazakii Phage
, vol.460-461
, pp. 138-146
-
-
Abbasifar, R.1
Griffiths, M.W.2
Sabour, P.M.3
Ackermann, H.-W.4
Vandersteegen, K.5
Lavigne, R.6
Noben, J.-P.7
Alanis, V.A.8
Abbasifar, A.9
Nash, J.H.E.10
Kropinski, A.M.11
-
2
-
-
85030318437
-
Viral communities of the human gut: Metagenomic analysis of composition and dynamics
-
DOI 10.1186/s13100-017-0095-y
-
Aggarwala V, Liang G, Bushman FD. 2017. Viral communities of the human gut: Metagenomic analysis of composition and dynamics. Mobile DNA 8:12 DOI 10.1186/s13100-017-0095-y.
-
(2017)
Mobile DNA
, vol.8
, pp. 12
-
-
Aggarwala, V.1
Liang, G.2
Bushman, F.D.3
-
3
-
-
85016002937
-
Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomicallyderived viral sequences
-
DOI 10.1093/nar/gkw1002
-
Ahlgren NA, Ren J, Lu YY, Fuhrman JA, Sun F. 2016. Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomicallyderived viral sequences. Nucleic Acids Research 45:39-53 DOI 10.1093/nar/gkw1002.
-
(2016)
Nucleic Acids Research
, vol.45
, pp. 39-53
-
-
Ahlgren, N.A.1
Ren, J.2
Lu, Y.Y.3
Fuhrman, J.A.4
Sun, F.5
-
4
-
-
84924388692
-
Minion nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
-
DOI 10.1038/nbt.3103
-
Ashton PM, Nair S, Dallman T, Rubino S, Rabsch W, Mwaigwisya S, Wain J, O'Grady J. 2015. MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island. Nature Biotechnology 33:296-300 DOI 10.1038/nbt.3103.
-
(2015)
Nature Biotechnology
, vol.33
, pp. 296-300
-
-
Ashton, P.M.1
Nair, S.2
Dallman, T.3
Rubino, S.4
Rabsch, W.5
Mwaigwisya, S.6
Wain, J.7
O'Grady, J.8
-
5
-
-
0028113405
-
An intron in the thymidylate synthase gene of bacillus bacteriophage beta 22: Evidence for independent evolution of a gene, its group i intron, and the intron open reading frame
-
DOI 10.1073/pnas.91.24.11669
-
Bechhofer DH, Hue KK, Shub DA. 1994. An intron in the thymidylate synthase gene of Bacillus bacteriophage beta 22: Evidence for independent evolution of a gene, its group I intron, and the intron open reading frame. Proceedings of the National Academy of Sciences of the United States of America 91(24):11669-11673 DOI 10.1073/pnas.91.24.11669.
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.24
, pp. 11669-11673
-
-
Bechhofer, D.H.1
Hue, K.K.2
Shub, D.A.3
-
6
-
-
85018974675
-
An ivirus tool to classify double-stranded DNA viruses that infect archaea and bacteria
-
vConTACT:, DOI 10.7717/peerj.3243
-
Bolduc B, Jang HB, Doulcier G, You Z-Q, Roux S, Sullivan MB. 2017. vConTACT: An iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria. PeerJ 5:3243 DOI 10.7717/peerj.3243.
-
(2017)
PeerJ
, vol.5
, pp. 3243
-
-
Bolduc, B.1
Jang, H.B.2
Doulcier, G.3
You, Z.-Q.4
Roux, S.5
Sullivan, M.B.6
-
7
-
-
84981505102
-
Phage on tap-a quick and efficient protocol for the preparation of bacteriophage laboratory stocks
-
DOI 10.7717/peerj.2261
-
Bonilla N, Rojas MI, Netto G, Cruz F, Hung S, Rohwer F, Barr J. 2016. Phage on Tap-a quick and efficient protocol for the preparation of bacteriophage laboratory stocks. PeerJ 4:2261 DOI 10.7717/peerj.2261.
-
(2016)
PeerJ
, vol.4
, pp. 2261
-
-
Bonilla, N.1
Rojas, M.I.2
Netto, G.3
Cruz, F.4
Hung, S.5
Rohwer, F.6
Barr, J.7
-
9
-
-
78249233383
-
Exploring the vast diversity of marine viruses
-
DOI 10.5670/oceanog.2007.58
-
Breitbart M, Thompson LR, Suttle CA, Sullivan MB. 2007. Exploring the vast diversity of marine viruses. Oceanography 20:135-139 DOI 10.5670/oceanog.2007.58.
-
(2007)
Oceanography
, vol.20
, pp. 135-139
-
-
Breitbart, M.1
Thompson, L.R.2
Suttle, C.A.3
Sullivan, M.B.4
-
10
-
-
20444453307
-
Protein length in eukaryotic and prokaryotic proteomes
-
DOI 10.1093/nar/gki615
-
Brocchieri L, Karlin S. 2005. Protein length in eukaryotic and prokaryotic proteomes. Nucleic Acids Research 33(10):3390-3400 DOI 10.1093/nar/gki615.
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.10
, pp. 3390-3400
-
-
Brocchieri, L.1
Karlin, S.2
-
11
-
-
84929998256
-
Ocean plankton. Patterns and ecological drivers of ocean viral communities.
-
DOI 10.1126/science.1261498
-
Brum JR, Ignacio-Espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Chaffron S, Cruaud C, De Vargas C, Gasol JM, Gorsky G, Gregory AC, Guidi L, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Poulos BT, Schwenck SM, Speich S, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Tara Oceans C, Bork P, Bowler C, Sunagawa S, Wincker P, Karsenti E, Sullivan MB. 2015. Ocean plankton. Patterns and ecological drivers of ocean viral communities. Science 348(6237):1261498 DOI 10.1126/science.1261498.
-
(2015)
Science
, vol.348
, Issue.6237
, pp. 1261498
-
-
Brum, J.R.1
Ignacio-Espinoza, J.C.2
Roux, S.3
Doulcier, G.4
Acinas, S.G.5
Alberti, A.6
Chaffron, S.7
Cruaud, C.8
De, V.C.9
Gasol, J.M.10
Gorsky, G.11
Gregory, A.C.12
Guidi, L.13
Hingamp, P.14
Iudicone, D.15
Not, F.16
Ogata, H.17
Pesant, S.18
Poulos, B.T.19
Schwenck, S.M.20
Speich, S.21
Dimier, C.22
Kandels-Lewis, S.23
Picheral, M.24
Searson, S.25
Tara, O.C.26
Bork, P.27
Bowler, C.28
Sunagawa, S.29
Wincker, P.30
Karsenti, E.31
Sullivan, M.B.32
more..
-
12
-
-
74049108922
-
Blast+: Architecture and applications
-
DOI 10.1186/1471-2105-10-421
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST+: Architecture and applications. BMC Bioinformatics 10:421 DOI 10.1186/1471-2105-10-421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
14
-
-
33645232361
-
Genomic islands and the ecology and evolution of prochlorococcus
-
DOI 10.1126/science.1122050
-
Coleman ML, Sullivan MB, Martiny AC, Steglich C, Barry K, Delong EF, Chisholm SW. 2006. Genomic islands and the ecology and evolution of Prochlorococcus. Science 311(5768):1768-1770 DOI 10.1126/science.1122050.
-
(2006)
Science
, vol.311
, Issue.5768
, pp. 1768-1770
-
-
Coleman, M.L.1
Sullivan, M.B.2
Martiny, A.C.3
Steglich, C.4
Barry, K.5
Delong, E.F.6
Chisholm, S.W.7
-
15
-
-
84891940182
-
The new statistics: Why and how
-
DOI 10.1177/0956797613504966
-
Cumming G. 2014. The new statistics: Why and how. Psychological Science 25:7-29 DOI 10.1177/0956797613504966.
-
(2014)
Psychological Science
, vol.25
, pp. 7-29
-
-
Cumming, G.1
-
16
-
-
84924150135
-
An inexpensive, accurate, and precise wet-mount method for enumerating aquatic viruses
-
DOI 10.1128/AEM.03642-14
-
Cunningham BR, Brum JR, Schwenck SM, Sullivan MB, John SG. 2015. An inexpensive, accurate, and precise wet-mount method for enumerating aquatic viruses. Applied and Environmental Microbiology 81:2995-3000 DOI 10.1128/AEM.03642-14.
-
(2015)
Applied and Environmental Microbiology
, vol.81
, pp. 2995-3000
-
-
Cunningham, B.R.1
Brum, J.R.2
Schwenck, S.M.3
Sullivan, M.B.4
John, S.G.5
-
17
-
-
70449559872
-
Qvalue: Q-value estimation for false discovery rate control
-
Dabney A, Storey JD, Warnes GR. 2015. qvalue: Q-value estimation for false discovery rate control. R package version 2.12.0. Available at https://www.bioconductor.org/packages/release/bioc/html/qvalue.html.
-
(2015)
R Package Version
, vol.2
, pp. 120
-
-
Dabney, A.1
Storey, J.D.2
Warnes, G.R.3
-
19
-
-
84906254581
-
Viral tagging reveals discrete populations in synechococcus viral genome sequence space
-
DOI 10.1038/nature13459
-
Deng L, Ignacio-Espinoza JC, Gregory AC, Poulos BT, Weitz JS, Hugenholtz P, Sullivan MB. 2014. Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature 513:242-245 DOI 10.1038/nature13459.
-
(2014)
Nature
, vol.513
, pp. 242-245
-
-
Deng, L.1
Ignacio-Espinoza, J.C.2
Gregory, A.C.3
Poulos, B.T.4
Weitz, J.S.5
Hugenholtz, P.6
Sullivan, M.B.7
-
20
-
-
85009834118
-
Towards long-read metagenomics: Complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture
-
DOI 10.1186/s40793-017-0224-8
-
Driscoll CB, Otten TG, Brown NM, Dreher TW. 2017. Towards long-read metagenomics: Complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture. Standards in Genomic Sciences 12:9 DOI 10.1186/s40793-017-0224-8.
-
(2017)
Standards in Genomic Sciences
, vol.12
, pp. 9
-
-
Driscoll, C.B.1
Otten, T.G.2
Brown, N.M.3
Dreher, T.W.4
-
21
-
-
84865720549
-
Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: A rigorous assessment and optimization of the linker amplification method
-
DOI 10.1111/j.1462-2920.2012.02791.x
-
Duhaime MB, Deng L, Poulos BT, Sullivan MB. 2012. Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: A rigorous assessment and optimization of the linker amplification method. Environmental Microbiology 14:2526-2537 DOI 10.1111/j.1462-2920.2012.02791.x.
-
(2012)
Environmental Microbiology
, vol.14
, pp. 2526-2537
-
-
Duhaime, M.B.1
Deng, L.2
Poulos, B.T.3
Sullivan, M.B.4
-
22
-
-
84873343920
-
A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes
-
DOI 10.1186/1471-2148-13-33
-
Dwivedi B, Xue B, Lundin D, Edwards RA, Breitbart M. 2013. A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes. BMC Evolutionary Biology 13:33 DOI 10.1186/1471-2148-13-33.
-
(2013)
BMC Evolutionary Biology
, vol.13
, pp. 33
-
-
Dwivedi, B.1
Xue, B.2
Lundin, D.3
Edwards, R.A.4
Breitbart, M.5
-
23
-
-
84872972322
-
The virocell concept and environmental microbiology
-
DOI 10.1038/ismej.2012.110
-
Forterre P. 2013. The virocell concept and environmental microbiology. The ISME Journal 7:233-236 DOI 10.1038/ismej.2012.110.
-
(2013)
The ISME Journal
, vol.7
, pp. 233-236
-
-
Forterre, P.1
-
24
-
-
84969172659
-
Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data
-
DOI 10.1038/srep25373
-
Frank JA, Pan Y, Tooming-Klunderud A, Eijsink VGH, McHardy AC, Nederbragt AJ, Pope PB. 2016. Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports 6:25373 DOI 10.1038/srep25373.
-
(2016)
Scientific Reports
, vol.6
, pp. 25373
-
-
Frank, J.A.1
Pan, Y.2
Tooming-Klunderud, A.3
Eijsink, V.G.H.4
McHardy, A.C.5
Nederbragt, A.J.6
Pb7
-
25
-
-
85030691329
-
Wish: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs
-
DOI 10.1093/bioinformatics/btx383
-
Galiez C, Siebert M, Enault F, Vincent J, Söding J. 2017. WIsH: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs. Bioinformatics 33:3113-3114 DOI 10.1093/bioinformatics/btx383.
-
(2017)
Bioinformatics
, vol.33
, pp. 3113-3114
-
-
Galiez, C.1
Siebert, M.2
Enault, F.3
Vincent, J.4
Söding, J.5
-
26
-
-
85008950183
-
Sar11 bacteria: The most abundant plankton in the oceans
-
DOI 10.1146/annurev-marine-010814-015934
-
Giovannoni S. 2017. SAR11 bacteria: The most abundant plankton in the oceans. Annual Review of Marine Science 9:231-255 DOI 10.1146/annurev-marine-010814-015934.
-
(2017)
Annual Review of Marine Science
, vol.9
, pp. 231-255
-
-
Giovannoni, S.1
-
27
-
-
85009786638
-
Clinical and biological insights from viral genome sequencing. Nature reviews
-
DOI 10.1038/nrmicro.2016.182
-
Houldcroft CJ, Beale MA, Breuer J. 2017. Clinical and biological insights from viral genome sequencing. Nature Reviews. Microbiology 15:183-192 DOI 10.1038/nrmicro.2016.182.
-
(2017)
Microbiology
, vol.15
, pp. 183-192
-
-
Houldcroft, C.J.1
Beale, M.A.2
Breuer, J.3
-
28
-
-
84876484290
-
Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics
-
DOI 10.1111/j.1462-2920.2012.02836.x
-
Hurwitz BL, Deng L, Poulos BT, Sullivan MB. 2013. Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics. Environmental Microbiology 15:1428-1440 DOI 10.1111/j.1462-2920.2012.02836.x.
-
(2013)
Environmental Microbiology
, vol.15
, pp. 1428-1440
-
-
Hurwitz, B.L.1
Deng, L.2
Poulos, B.T.3
Sullivan, M.B.4
-
29
-
-
84887380143
-
Metabolic reprogramming by viruses in the sunlit and dark ocean
-
DOI 10.1186/gb-2013-14-11-r123
-
Hurwitz BL, Hallam SJ, Sullivan MB. 2013. Metabolic reprogramming by viruses in the sunlit and dark ocean. Genome Biology 14:123 DOI 10.1186/gb-2013-14-11-r123.
-
(2013)
Genome, Biology
, vol.14
, pp. 123
-
-
Hurwitz, B.L.1
Hallam, S.J.2
Sullivan, M.B.3
-
30
-
-
84874530236
-
The pacific ocean virome (pov): A marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology
-
DOI 10.1371/journal.pone.0057355
-
Hurwitz BL, Sullivan MB. 2013. The Pacific Ocean Virome (POV): A marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology. PLOS ONE 8(2):57355 DOI 10.1371/journal.pone.0057355.
-
(2013)
PLOS ONE
, vol.8
, Issue.2
, pp. 57355
-
-
Hurwitz, B.L.1
Sullivan, M.B.2
-
31
-
-
84962854177
-
Viral metabolic reprogramming in marine ecosystems
-
DOI 10.1016/j.mib.2016.04.002
-
Hurwitz BL, U'Ren JM. 2016. Viral metabolic reprogramming in marine ecosystems. Current Opinion in Microbiology 31:161-168 DOI 10.1016/j.mib.2016.04.002.
-
(2016)
Current Opinion in Microbiology
, vol.31
, pp. 161-168
-
-
Hurwitz, B.L.1
U'Ren, J.M.2
-
32
-
-
84926472171
-
Improved data analysis for the minion nanopore sequencer
-
DOI 10.1038/nmeth.3290
-
Jain M, Fiddes IT, Miga KH, Olsen HE, Paten B, Akeson M. 2015. Improved data analysis for the MinION nanopore sequencer. Nature Methods 12:351-356 DOI 10.1038/nmeth.3290.
-
(2015)
Nature Methods
, vol.12
, pp. 351-356
-
-
Jain, M.1
Fiddes, I.T.2
Miga, K.H.3
Olsen, H.E.4
Paten, B.5
Akeson, M.6
-
33
-
-
85044543338
-
Nanopore sequencing and assembly of a human genome with ultra-long reads
-
DOI 10.1038/nbt.4060
-
Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, Pedersen BS, Rhie A, Richardson H, Quinlan AR, Snutch TP, Tee L, Paten B, Phillippy AM, Simpson JT, Loman NJ, Loose M. 2018. Nanopore sequencing and assembly of a human genome with ultra-long reads. Nature Biotechnology 36:338-345 DOI 10.1038/nbt.4060.
-
(2018)
Nature Biotechnology
, vol.36
, pp. 338-345
-
-
Jain, M.1
Koren, S.2
Miga, K.H.3
Quick, J.4
Rand, A.C.5
Sasani, T.A.6
Tyson, J.R.7
Beggs, A.D.8
Dilthey, A.T.9
Fiddes, I.T.10
Malla, S.11
Marriott, H.12
Nieto, T.13
O'Grady, J.14
Olsen, H.E.15
Pedersen, B.S.16
Rhie, A.17
Richardson, H.18
Quinlan, A.R.19
Snutch, T.P.20
Tee, L.21
Paten, B.22
Phillippy, A.M.23
Simpson, J.T.24
Loman, N.J.25
Loose, M.26
more..
-
34
-
-
79954570132
-
Simple and efficient method for concentration of ocean viruses by chemical flocculation.
-
A, DOI 10.1111/j.1758-2229.2010.00208.x
-
John SG, Mendez CB, Deng L, Poulos B, Kauffman AK, Kern S, Brum J, Polz MF, Boyle EA, Sullivan MB. 2011. A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environmental Microbiology Reports 3:195-202 DOI 10.1111/j.1758-2229.2010.00208.x.
-
(2011)
Environmental Microbiology Reports
, vol.3
, pp. 195-202
-
-
John, S.G.1
Mendez, C.B.2
Deng, L.3
Poulos, B.4
Kauffman, A.K.5
Kern, S.6
Brum, J.7
Polz, M.F.8
Boyle, E.A.9
Sullivan, M.B.10
-
35
-
-
85054056734
-
Direct RNA sequencing of the coding complete influenza a virus genome
-
DOI 10.1038/s41598-018-32615-8
-
Keller MW, Rambo-Martin BL, Wilson MM, Ridenour CA, Shepard SS, Stark TJ, Neuhaus EB, Dugan VG, Wentworth DE, Barnes JR. 2018. Direct RNA sequencing of the coding complete influenza a virus genome. Scientific Reports 8:14408 DOI 10.1038/s41598-018-32615-8.
-
(2018)
Scientific Reports
, vol.8
, pp. 14408
-
-
Keller, M.W.1
Rambo-Martin, B.L.2
Wilson, M.M.3
Ridenour, C.A.4
Shepard, S.S.5
Stark, T.J.6
Neuhaus, E.B.7
Dugan, V.G.8
Wentworth, D.E.9
Barnes, J.R.10
-
36
-
-
84913554630
-
One chromosome, one contig: Complete microbial genomes from long-read sequencing and assembly
-
DOI 10.1016/j.mib.2014.11.014
-
Koren S, Phillippy AM. 2015. One chromosome, one contig: Complete microbial genomes from long-read sequencing and assembly. Current Opinion in Microbiology 23:110-120 DOI 10.1016/j.mib.2014.11.014.
-
(2015)
Current Opinion in Microbiology
, vol.23
, pp. 110-120
-
-
Koren, S.1
Phillippy, A.M.2
-
37
-
-
85060555925
-
Reply to errors in long-read assemblies can critically affect protein prediction
-
DOI 10.1038/s41587-018-0005-y
-
Koren S, Phillippy AM, Simpson JT, Loman NJ, Loose M. 2019. Reply to errors in long-read assemblies can critically affect protein prediction. Nature Biotechnology 37(2):127-128 DOI 10.1038/s41587-018-0005-y.
-
(2019)
Nature Biotechnology
, vol.37
, Issue.2
, pp. 127-128
-
-
Koren, S.1
Phillippy, A.M.2
Simpson, J.T.3
Loman, N.J.4
Loose, M.5
-
38
-
-
85019066712
-
Canu: Scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
-
DOI 10.1101/gr.215087.116
-
Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM. 2017. Canu: Scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Research 27:722-736 DOI 10.1101/gr.215087.116.
-
(2017)
Genome Research
, vol.27
, pp. 722-736
-
-
Koren, S.1
Walenz, B.P.2
Berlin, K.3
Miller, J.R.4
Bergman, N.H.5
Phillippy, A.M.6
-
39
-
-
85013159173
-
Origins and challenges of viral dark matter
-
DOI 10.1016/j.virusres.2017.02.002
-
Krishnamurthy SR, Wang D. 2017. Origins and challenges of viral dark matter. Virus Research 239:136-142 DOI 10.1016/j.virusres.2017.02.002.
-
(2017)
Virus Research
, vol.239
, pp. 136-142
-
-
Krishnamurthy, S.R.1
Wang, D.2
-
40
-
-
84859210032
-
Fast gapped-read alignment with bowtie 2
-
DOI 10.1038/nmeth.1923
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nature Methods 9:357-359 DOI 10.1038/nmeth.1923.
-
(2012)
Nature Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
41
-
-
84962329110
-
Pitfalls of haplotype phasing from ampliconbased long-read sequencing
-
DOI 10.1038/srep21746
-
Laver TW, Caswell RC, Moore KA, Poschmann J, Johnson MB, Owens MM, Ellard S, Paszkiewicz KH, Weedon MN. 2016. Pitfalls of haplotype phasing from ampliconbased long-read sequencing. Scientific Reports 6:21746 DOI 10.1038/srep21746.
-
(2016)
Scientific Reports
, vol.6
, pp. 21746
-
-
Laver, T.W.1
Caswell, R.C.2
Moore, K.A.3
Poschmann, J.4
Johnson, M.B.5
Owens, M.M.6
Ellard, S.7
Paszkiewicz, K.H.8
Weedon, M.N.9
-
42
-
-
84938421951
-
A complete bacterial genome assembled de novo using only nanopore sequencing data.
-
DOI 10.1038/nmeth.3444
-
Loman NJ, Quick J, Simpson JT. 2015. A complete bacterial genome assembled de novo using only nanopore sequencing data. Nature Methods 12:733-735 DOI 10.1038/nmeth.3444.
-
(2015)
Nature Methods
, vol.12
, pp. 733-735
-
-
Loman, N.J.1
Quick, J.2
Simpson, J.T.3
-
43
-
-
85039923223
-
Bacteriophage distributions and temporal variability in the ocean's interior
-
17
-
Luo E, Aylward FO, Mende DR, DeLong EF. 2017. Bacteriophage distributions and temporal variability in the ocean's interior. mBio 8(6):01903-17 DOI 10.1128/mBio.01903-17.
-
(2017)
MBio
, vol.8
, Issue.6
, pp. 01903
-
-
Luo, E.1
Aylward, F.O.2
Mende, D.R.3
DeLong, E.F.4
-
44
-
-
85051692756
-
A comprehensive and quantitative exploration of thousands of viral genomes
-
DOI 10.7554/eLife.31955
-
Mahmoudabadi G, Phillips R. 2018. A comprehensive and quantitative exploration of thousands of viral genomes. eLife 7:31955 DOI 10.7554/eLife.31955.
-
(2018)
ELife
, vol.7
, pp. 31955
-
-
Mahmoudabadi, G.1
Phillips, R.2
-
45
-
-
85021451179
-
Single-virus genomics reveals hidden cosmopolitan and abundant viruses
-
DOI 10.1038/ncomms15892
-
Martinez-Hernandez F, Fornas O, Lluesma Gomez M, Bolduc B, De la Cruz Penã MJ, Martínez JM, Anton J, Gasol JM, Rosselli R, Rodriguez-Valera F, Sullivan MB, Acinas SG, Martinez-Garcia M. 2017. Single-virus genomics reveals hidden cosmopolitan and abundant viruses. Nature Communications 8:15892 DOI 10.1038/ncomms15892.
-
(2017)
Nature Communications
, vol.8
, pp. 15892
-
-
Martinez-Hernandez, F.1
Fornas, O.2
Lluesma, G.M.3
Bolduc, B.4
De, L.C.P.M.J.5
Martínez, J.M.6
Anton, J.7
Gasol, J.M.8
Rosselli, R.9
Rodriguez-Valera, F.10
Sullivan, M.B.11
Acinas, S.G.12
Martinez-Garcia, M.13
-
46
-
-
85053658413
-
Single-cell genomics uncover pelagibacter as the putative host of the extremely abundant uncultured 37-f6 viral population in the ocean
-
DOI 10.1038/s41396-018-0278-7
-
Martinez-Hernandez F, Fornas Ò, Lluesma Gomez M, Garcia-Heredia I, Maestre-Carballa L, López-Pérez M, Haro-Moreno JM, Rodriguez-Valera F, Martinez-Garcia M. 2018. Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean. The ISME Journal 13:232-236 DOI 10.1038/s41396-018-0278-7.
-
(2018)
The ISME Journal
, vol.13
, pp. 232-236
-
-
Martinez-Hernandez, F.1
Fornas, Ò.2
Lluesma, G.M.3
Garcia-Heredia, I.4
Maestre-Carballa, L.5
López-Pérez, M.6
Haro-Moreno, J.M.7
Rodriguez-Valera, F.8
Martinez-Garcia, M.9
-
47
-
-
85067384434
-
Simultaneous detection of DNA and RNA virus species involved in bovine respiratory disease by PCR-free rapid tagmentation-based library preparation and minion nanopore sequencing
-
DOI 10.1101/269936
-
McCabe M, Cormican P, Johnston D, Earley B. 2018. Simultaneous detection of DNA and RNA virus species involved in bovine respiratory disease by PCR-free rapid tagmentation-based library preparation and MinION nanopore sequencing. bioRxiv DOI 10.1101/269936.
-
(2018)
BioRxiv
-
-
McCabe, M.1
Cormican, P.2
Johnston, D.3
Earley, B.4
-
48
-
-
84961348380
-
The iplant collaborative: Cyberinfrastructure for enabling data to discovery for the life sciences
-
DOI 10.1371/journal.pbio.1002342
-
Merchant N, Lyons E, Goff S, Vaughn M, Ware D, Micklos D, Antin P. 2016. The iPlant collaborative: Cyberinfrastructure for enabling data to discovery for the life sciences. PLOS Biology 14(1):1002342 DOI 10.1371/journal.pbio.1002342.
-
(2016)
PLOS Biology
, vol.14
, Issue.1
, pp. 1002342
-
-
Merchant, N.1
Lyons, E.2
Goff, S.3
Vaughn, M.4
Ware, D.5
Micklos, D.6
Antin, P.7
-
49
-
-
67649889988
-
Identification of candidate structured rnas in the marine organism candidatus pelagibacter ubique
-
DOI 10.1186/1471-2164-10-268
-
Meyer MM, Ames TD, Smith DP, Weinberg Z, Schwalbach MS, Giovannoni SJ, Breaker RR. 2009. Identification of candidate structured RNAs in the marine organism Candidatus Pelagibacter ubique. BMC Genomics 10:268 DOI 10.1186/1471-2164-10-268.
-
(2009)
BMC Genomics
, vol.10
, pp. 268
-
-
Meyer, M.M.1
Ames, T.D.2
Smith, D.P.3
Weinberg, Z.4
Schwalbach, M.S.5
Giovannoni, S.J.6
Breaker, R.R.7
-
50
-
-
85018297391
-
Ménage à trois in the human gut: Interactions between host, bacteria and phages. Nature reviews.
-
DOI 10.1038/nrmicro.2017.30
-
Mirzaei MK, Maurice CF. 2017. Ménage à trois in the human gut: Interactions between host, bacteria and phages. Nature Reviews. Microbiology 15(7):397-408 DOI 10.1038/nrmicro.2017.30.
-
(2017)
Microbiology
, vol.15
, Issue.7
, pp. 397-408
-
-
Mirzaei, M.K.1
Maurice, C.F.2
-
51
-
-
84897599619
-
Evidence for metaviromic islands in marine phages
-
DOI 10.3389/fmicb.2014.00027
-
Mizuno CM, Ghai R, Rodriguez-Valera F. 2014. Evidence for metaviromic islands in marine phages. Frontiers in Microbiology 5(27) DOI 10.3389/fmicb.2014.00027.
-
(2014)
Frontiers in Microbiology
, vol.5
, Issue.27
-
-
Mizuno, C.M.1
Ghai, R.2
Rodriguez-Valera, F.3
-
52
-
-
84986586972
-
Genomes of abundant and widespread viruses from the deep ocean
-
16
-
Mizuno CM, Ghai R, Saghaï A, López-Garciá P, Rodriguez-Valera F. 2016. Genomes of abundant and widespread viruses from the deep ocean. mBio 7(4):00805-16 DOI 10.1128/mBio.00805-16.
-
(2016)
MBio
, vol.7
, Issue.4
, pp. 00805
-
-
Mizuno, C.M.1
Ghai, R.2
Saghaï, A.3
López-Garciá, P.4
Rodriguez-Valera, F.5
-
53
-
-
84892736640
-
Expanding the marine virosphere using metagenomics
-
DOI 10.1371/journal.pgen.1003987
-
Mizuno CM, Rodriguez-Valera F, Kimes NE, Ghai R. 2013. Expanding the marine virosphere using metagenomics. PLOS Genetics 9(12):1003987 DOI 10.1371/journal.pgen.1003987.
-
(2013)
PLOS Genetics
, vol.9
, Issue.12
, pp. 1003987
-
-
Mizuno, C.M.1
Rodriguez-Valera, F.2
Kimes, N.E.3
Ghai, R.4
-
54
-
-
0005814023
-
Mathematical model for studying genetic variation in terms of restriction endonucleases
-
DOI 10.1073/pnas.76.10.5269
-
Nei M, Li WH. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences of the United States of America 76:5269-5273 DOI 10.1073/pnas.76.10.5269.
-
(1979)
Proceedings of the National Academy of Sciences of the United States of America
, vol.76
, pp. 5269-5273
-
-
Nei, M.1
Li, W.H.2
-
55
-
-
84860361165
-
Detecting overlapping protein complexes in protein-protein interaction networks
-
DOI 10.1038/nmeth.1938
-
Nepusz T, Yu H, Paccanaro A. 2012. Detecting overlapping protein complexes in protein-protein interaction networks. Nature Methods 9:471-472 DOI 10.1038/nmeth.1938.
-
(2012)
Nature Methods
, vol.9
, pp. 471-472
-
-
Nepusz, T.1
Yu, H.2
Paccanaro, A.3
-
57
-
-
59149090570
-
Metageneannotator: Detecting speciesspecific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes
-
DOI 10.1093/dnares/dsn027
-
Noguchi H, Taniguchi T, Itoh T. 2008. MetaGeneAnnotator: Detecting speciesspecific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes. DNA Research 15(6):387-396 DOI 10.1093/dnares/dsn027.
-
(2008)
DNA Research
, vol.15
, Issue.6
, pp. 387-396
-
-
Noguchi, H.1
Taniguchi, T.2
Itoh, T.3
-
58
-
-
85019133486
-
Metaspades: A new versatile metagenomic assembler
-
DOI 10.1101/gr.213959.116
-
Nurk S, Meleshko D, Korobeynikov A, Pevzner PA. 2017. metaSPAdes: A new versatile metagenomic assembler. Genome Research 27:824-834 DOI 10.1101/gr.213959.116.
-
(2017)
Genome Research
, vol.27
, pp. 824-834
-
-
Nurk, S.1
Meleshko, D.2
Korobeynikov, A.3
Pevzner, P.A.4
-
60
-
-
85072965301
-
Metagenomic assembly through the lens of validation: Recent advances in assessing and improving the quality of genomes assembled from metagenome
-
s. Aug, 2017 DOI 10.1093/bib/bbx098
-
Olson ND, Treangen TJ, Hill CM, Cepeda-Espinoza V, Ghurye J, Koren S, Pop M. 2017. Metagenomic assembly through the lens of validation: Recent advances in assessing and improving the quality of genomes assembled from metagenomes. Briefings in Bioinformatics Epub ahead of print Aug 7 2017 DOI 10.1093/bib/bbx098.
-
(2017)
Briefings in Bioinformatics Epub Ahead of Print
, vol.7
-
-
Olson, N.D.1
Treangen, T.J.2
Hill, C.M.3
Cepeda-Espinoza, V.4
Ghurye, J.5
Koren, S.6
Pop, M.7
-
61
-
-
85039867910
-
The neglected soil virome-potential role and impact
-
DOI 10.1016/j.tim.2017.12.004
-
Pratama AA, Van Elsas JD. 2018. The neglected soil virome-potential role and impact. Trends in Microbiology 26:649-662 DOI 10.1016/j.tim.2017.12.004.
-
(2018)
Trends in Microbiology
, vol.26
, pp. 649-662
-
-
Pratama, A.A.1
Van, E.J.D.2
-
62
-
-
84989812720
-
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
-
DOI 10.1038/nature19366
-
Roux S, Brum JR, Dutilh BE, Sunagawa S, Duhaime MB, Loy A, Poulos BT, Solonenko N, Lara E, Poulain J, Pesant S, Kandels-Lewis S, Dimier C, Picheral M, Searson S, Cruaud C, Alberti A, Duarte CM, Gasol JM, Vaque D, Oceans CTara, Bork P, Acinas SG, Wincker P, Sullivan MB. 2016. Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses. Nature 537:689-693 DOI 10.1038/nature19366.
-
(2016)
Nature
, vol.537
, pp. 689-693
-
-
Roux, S.1
Brum, J.R.2
Dutilh, B.E.3
Sunagawa, S.4
Duhaime, M.B.5
Loy, A.6
Poulos, B.T.7
Solonenko, N.8
Lara, E.9
Poulain, J.10
Pesant, S.11
Kandels-Lewis, S.12
Dimier, C.13
Picheral, M.14
Searson, S.15
Cruaud, C.16
Alberti, A.17
Duarte, C.M.18
Gasol, J.M.19
Vaque, D.20
Oceans, C.21
Bork, P.22
Acinas, S.G.23
Wincker, P.24
Sullivan, M.B.25
more..
-
63
-
-
85029704396
-
Benchmarking viromics: An in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
-
DOI 10.7717/peerj.3817
-
Roux S, Emerson JB, Eloe-Fadrosh EA, Sullivan MB. 2017. Benchmarking viromics: An in silico evaluation of metagenome-enabled estimates of viral community composition and diversity. PeerJ 5:3817 DOI 10.7717/peerj.3817.
-
(2017)
PeerJ
, vol.5
, pp. 3817
-
-
Roux, S.1
Emerson, J.B.2
Eloe-Fadrosh, E.A.3
Sullivan, M.B.4
-
64
-
-
84930658013
-
Virsorter: Mining viral signal from microbial genomic data
-
DOI 10.7717/peerj.985
-
Roux S, Enault F, Hurwitz BL, Sullivan MB. 2015. VirSorter: Mining viral signal from microbial genomic data. PeerJ 3:985 DOI 10.7717/peerj.985.
-
(2015)
PeerJ
, vol.3
, pp. 985
-
-
Roux, S.1
Enault, F.2
Hurwitz, B.L.3
Sullivan, M.B.4
-
65
-
-
85006073389
-
Towards quantitative viromics for both double-stranded and single-stranded DNA viruses
-
DOI 10.7717/peerj.2777
-
Roux S, Solonenko NE, Dang VT, Poulos BT, Schwenck SM, Goldsmith DB, Coleman ML, Breitbart M, Sullivan MB. 2016. Towards quantitative viromics for both double-stranded and single-stranded DNA viruses. PeerJ 4:2777 DOI 10.7717/peerj.2777.
-
(2016)
PeerJ
, vol.4
, pp. 2777
-
-
Roux, S.1
Solonenko, N.E.2
Dang, V.T.3
Poulos, B.T.4
Schwenck, S.M.5
Goldsmith, D.B.6
Coleman, M.L.7
Breitbart, M.8
Sullivan, M.B.9
-
67
-
-
84861302821
-
Genome of klebsiella sp.-infecting bacteriophage bklemrak2
-
DOI 10.1128/JVI.00347-12
-
Simolunas E, Kaliniene L, Truncaite L, Klausa V, Zajankauskaite A, Mekys R. 2012. Genome of Klebsiella sp.-infecting bacteriophage BKleMRaK2. Journal of Virology 86:5406 DOI 10.1128/JVI.00347-12.
-
(2012)
Journal of Virology
, vol.86
, pp. 5406
-
-
Simolunas, E.1
Kaliniene, L.2
Truncaite, L.3
Klausa, V.4
Zajankauskaite, A.5
Mekys, R.6
-
68
-
-
84923012753
-
Viromes, not gene markers, for studying double-stranded DNA virus communities
-
DOI 10.1128/JVI.03289-14
-
Sullivan MB. 2015. Viromes, not gene markers, for studying double-stranded DNA virus communities. Journal of Virology 89:2459-2461 DOI 10.1128/JVI.03289-14.
-
(2015)
Journal of Virology
, vol.89
, pp. 2459-2461
-
-
Sullivan, M.B.1
-
69
-
-
25144506135
-
Viruses in the sea
-
DOI 10.1038/nature04160
-
Suttle CA. 2005. Viruses in the sea. Nature 437:356-361 DOI 10.1038/nature04160.
-
(2005)
Nature
, vol.437
, pp. 356-361
-
-
Suttle, C.A.1
-
70
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
DOI 10.1038/nrmicro1750
-
Suttle CA. 2007. Marine viruses-major players in the global ecosystem. Nature Reviews. Microbiology 5:801-812 DOI 10.1038/nrmicro1750.
-
(2007)
Nature Reviews. Microbiology
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
71
-
-
84868091529
-
Metagenomics: Microbial diversity through a scratched lens
-
DOI 10.1016/j.mib.2012.07.001
-
Temperton B, Giovannoni SJ. 2012. Metagenomics: Microbial diversity through a scratched lens. Current Opinion in Microbiology 15(5):605-612 DOI 10.1016/j.mib.2012.07.001.
-
(2012)
Current Opinion in Microbiology
, vol.15
, Issue.5
, pp. 605-612
-
-
Temperton, B.1
Giovannoni, S.J.2
-
72
-
-
85034804875
-
A communal catalogue reveals earth's multiscale microbial diversity
-
Earth Microbiome Project Consortium, DOI 10.1038/nature24621
-
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R, Earth Microbiome Project Consortium. 2017. A communal catalogue reveals Earth's multiscale microbial diversity. Nature 551:457-463 DOI 10.1038/nature24621.
-
(2017)
Nature
, vol.551
, pp. 457-463
-
-
Thompson, L.R.1
Sanders, J.G.2
McDonald, D.3
Amir, A.4
Ladau, J.5
Locey, K.J.6
Prill, R.J.7
Tripathi, A.8
Gibbons, S.M.9
Ackermann, G.10
Navas-Molina, J.A.11
Janssen, S.12
Kopylova, E.13
Vázquez-Baeza, Y.14
González, A.15
Morton, J.T.16
Mirarab, S.17
Zech, X.Z.18
Jiang, L.19
Haroon, M.F.20
Kanbar, J.21
Zhu, Q.22
Jin, S.S.23
Kosciolek, T.24
Bokulich, N.A.25
Lefler, J.26
Brislawn, C.J.27
Humphrey, G.28
Owens, S.M.29
Hampton-Marcell, J.30
Berg-Lyons, D.31
McKenzie, V.32
Fierer, N.33
Fuhrman, J.A.34
Clauset, A.35
Stevens, R.L.36
Shade, A.37
Pollard, K.S.38
Goodwin, K.D.39
Jansson, J.K.40
Gilbert, J.A.41
Knight, R.42
more..
-
73
-
-
85040537554
-
Fastviromeexplorer: A pipeline for virus and phage identification and abundance profiling in metagenomics data
-
DOI 10.7717/peerj.4227
-
Tithi SS, Aylward FO, Jensen RV, Zhang L. 2018. FastViromeExplorer: A pipeline for virus and phage identification and abundance profiling in metagenomics data. PeerJ 6:4A227 DOI 10.7717/peerj.4227.
-
(2018)
PeerJ
, vol.6
, pp. 4A227
-
-
Tithi, S.S.1
Aylward, F.O.2
Jensen, R.V.3
Zhang, L.4
-
74
-
-
0036270789
-
Microbial diversity and function in soil: From genes to ecosystems
-
DOI 10.1016/S1369-5274(02)00324-7
-
Torsvik V, Øvreås L. 2002. Microbial diversity and function in soil: From genes to ecosystems. Current Opinion in Microbiology 5(1):240-245 DOI 10.1016/S1369-5274(02)00324-7.
-
(2002)
Current Opinion in Microbiology
, vol.5
, Issue.1
, pp. 240-245
-
-
Torsvik, V.1
Øvreås, L.2
-
75
-
-
70349472694
-
Seasonality and vertical structure of microbial communities in an ocean gyre
-
DOI 10.1038/ismej.2009.60
-
Treusch AH, Vergin KL, Finlay LA, Donatz MG, Burton RM, Carlson CA, Giovannoni SJ. 2009. Seasonality and vertical structure of microbial communities in an ocean gyre. The ISME Journal 3:1148-1163 DOI 10.1038/ismej.2009.60.
-
(2009)
The ISME Journal
, vol.3
, pp. 1148-1163
-
-
Treusch, A.H.1
Vergin, K.L.2
Finlay, L.A.3
Donatz, M.G.4
Burton, R.M.5
Carlson, C.A.6
Giovannoni, S.J.7
-
76
-
-
85071056528
-
Nanopore direct RNA sequencing reveals modification in full-length coronavirus genomes
-
DOI 10.1101/483693
-
Viehweger A, Krautwurst S, Lamkiewicz K, Madhugiri R, Ziebuhr J, Hölzer M, Marz M. 2018. Nanopore direct RNA sequencing reveals modification in full-length coronavirus genomes. bioRxiv preprint DOI 10.1101/483693.
-
(2018)
BioRxiv Preprint
-
-
Viehweger, A.1
Krautwurst, S.2
Lamkiewicz, K.3
Madhugiri, R.4
Ziebuhr, J.5
Hölzer, M.6
Marz, M.7
-
77
-
-
84914689868
-
Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement
-
DOI 10.1371/journal.pone.0112963
-
Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, Earl AM. 2014. Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLOS ONE 9(11):112963 DOI 10.1371/journal.pone.0112963.
-
(2014)
PLOS ONE
, vol.9
, Issue.11
, pp. 112963
-
-
Walker, B.J.1
Abeel, T.2
Shea, T.3
Priest, M.4
Abouelliel, A.5
Sakthikumar, S.6
Cuomo, C.A.7
Zeng, Q.8
Wortman, J.9
Young, S.K.10
Earl, A.M.11
-
78
-
-
85060519763
-
Errors in long-read assemblies can critically affect protein prediction
-
DOI 10.1038/s41587-018-0004-z
-
Warr A, Watson M. 2019. Errors in long-read assemblies can critically affect protein prediction. Nature Biotechnology 37:124-126 DOI 10.1038/s41587-018-0004-z.
-
(2019)
Nature Biotechnology
, vol.37
, pp. 124-126
-
-
Warr, A.1
Watson, M.2
-
79
-
-
1942486000
-
Ecology of prokaryotic viruses
-
DOI 10.1016/j.femsre.2003.08.001
-
Weinbauer MG. 2004. Ecology of prokaryotic viruses. FEMS Microbiology Reviews 28(2):127-181 DOI 10.1016/j.femsre.2003.08.001.
-
(2004)
FEMS Microbiology Reviews
, vol.28
, Issue.2
, pp. 127-181
-
-
Weinbauer, M.G.1
-
80
-
-
85026895692
-
-
F1000Research 6:100 DOI 10.12688/f1000research.10571.2
-
Weirather JL, De Cesare M, Wang Y, Piazza P, Sebastiano V, Wang X-J, Buck D, Au KF. 2017. Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis. F1000Research 6:100 DOI 10.12688/f1000research.10571.2.
-
(2017)
Comprehensive Comparison of Pacific Biosciences and Oxford Nanopore Technologies and Their Applications to Transcriptome Analysis
-
-
Weirather, J.L.1
De, C.M.2
Wang, Y.3
Piazza, P.4
Sebastiano, V.5
Wang, X.-J.6
Buck, D.7
Au, K.F.8
-
81
-
-
85021703436
-
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
-
DOI 10.1371/journal.pcbi.1005595
-
Wick RR, Judd LM, Gorrie CL, Holt KE. 2017. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLOS Computational Biology 13(6):1005595 DOI 10.1371/journal.pcbi.1005595.
-
(2017)
PLOS Computational Biology
, vol.13
, Issue.6
, pp. 1005595
-
-
Wick, R.R.1
Judd, L.M.2
Gorrie, C.L.3
Holt, K.E.4
-
82
-
-
84874193410
-
Abundant sar11 viruses in the ocean
-
DOI 10.1038/nature11921
-
Zhao Y, Temperton B, Thrash JC, Schwalbach MS, Vergin KL, Landry ZC, Ellisman M, Deerinck T, Sullivan MB, Giovannoni SJ. 2013. Abundant SAR11 viruses in the ocean. Nature 494:357-360 DOI 10.1038/nature11921.
-
(2013)
Nature
, vol.494
, pp. 357-360
-
-
Zhao, Y.1
Temperton, B.2
Thrash, J.C.3
Schwalbach, M.S.4
Vergin, K.L.5
Landry, Z.C.6
Ellisman, M.7
Deerinck, T.8
Sullivan, M.B.9
Giovannoni, S.J.10
|