-
1
-
-
84899409844
-
Topdown controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists
-
Chow CE, Kim DY, Sachdeva R, Caron DA, Fuhrman JA. 2014. Topdown controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists. ISME J 8:816-829. http://dx.doi.org/10.1038/ismej.2013.199.
-
(2014)
ISME J
, vol.8
, pp. 816-829
-
-
Chow, C.E.1
Kim, D.Y.2
Sachdeva, R.3
Caron, D.A.4
Fuhrman, J.A.5
-
2
-
-
84870665503
-
Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline
-
Duhaime M, Sullivan MB. 2012. Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline. Virology 434:181-186. http://dx.doi.org/10.1016/j.virol.2012.09.036.
-
(2012)
Virology
, vol.434
, pp. 181-186
-
-
Duhaime, M.1
Sullivan, M.B.2
-
3
-
-
78649773164
-
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
-
Adey A, Morrison HG, Asan Xun X, Kitzman JO, Turner EH, Stackhouse B, MacKenzie AP, Caruccio NC, Zhang X, Shendure J. 2010. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol 11:R119. http://dx.doi.org/10.1186/gb-2010-11-12-r119.
-
(2010)
Genome Biol
, vol.11
, pp. R119
-
-
Adey, A.1
Morrison, H.G.2
Asan Xun, X.3
Kitzman, J.O.4
Turner, E.H.5
Stackhouse, B.6
MacKenzie, A.P.7
Caruccio, N.C.8
Zhang, X.9
Shendure, J.10
-
4
-
-
84865720549
-
Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
-
Duhaime MB, Deng L, Poulos BT, Sullivan MB. 2012. Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method. Environ Microbiol 14:2526-2537. http://dx.doi.org/10.1111/j.1462-2920.2012.02791.x.
-
(2012)
Environ Microbiol
, vol.14
, pp. 2526-2537
-
-
Duhaime, M.B.1
Deng, L.2
Poulos, B.T.3
Sullivan, M.B.4
-
5
-
-
84855306099
-
Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA
-
Parkinson NJ, Maslau S, Ferneyhough B, Zhang G, Gregory L, Buck D, Ragoussis J, Ponting CP, Fischer MD. 2012. Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA. Genome Res 22:125-133. http://dx.doi.org/10.1101/gr.124016.111.
-
(2012)
Genome Res
, vol.22
, pp. 125-133
-
-
Parkinson, N.J.1
Maslau, S.2
Ferneyhough, B.3
Zhang, G.4
Gregory, L.5
Buck, D.6
Ragoussis, J.7
Ponting, C.P.8
Fischer, M.D.9
-
6
-
-
84874530236
-
The Pacific Ocean Virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology
-
Hurwitz BH, Sullivan MB. 2013. The Pacific Ocean Virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology. PLoS One 8:e57355. http://dx.doi.org/10.1371/journal.pone.0057355.
-
(2013)
PLoS One
, vol.8
-
-
Hurwitz, B.H.1
Sullivan, M.B.2
-
7
-
-
84881090889
-
Twelve previously unknown phage genera are ubiquitous in global oceans
-
Holmfeldt K, Solonenko N, Shah M, Corrier K, Riemann L, Verberkmoes NC, Sullivan MB. 2013. Twelve previously unknown phage genera are ubiquitous in global oceans. Proc Natl Acad Sci USA 110:12798-12803://dx.doi.org/10.1073/pnas.1305956110.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 12798-12803
-
-
Holmfeldt, K.1
Solonenko, N.2
Shah, M.3
Corrier, K.4
Riemann, L.5
Verberkmoes, N.C.6
Sullivan, M.B.7
-
8
-
-
84880693152
-
Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans
-
Kang I, Oh HM, Kang D, Cho JC. 2013. Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans. Proc Natl Acad Sci USA 110:12343-12348. http://dx.doi.org/10.1073/pnas.1219930110.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 12343-12348
-
-
Kang, I.1
Oh, H.M.2
Kang, D.3
Cho, J.C.4
-
9
-
-
84874193410
-
Abundant SAR11 viruses in the ocean
-
Zhao Y, Temperton B, Thrash J C, Schwalbach MS, Vergin KL, Landry ZC, Ellisman M, Deerinck T, Sullivan MB, Giovannoni SJ. 2013. Abundant SAR11 viruses in the ocean. Nature 494:357-360. http://dx.doi.org/10.1038/nature11921.
-
(2013)
Nature
, vol.494
, pp. 357-360
-
-
Zhao, Y.1
Temperton, B.2
Thrash, J.C.3
Schwalbach, M.S.4
Vergin, K.L.5
Landry, Z.C.6
Ellisman, M.7
Deerinck, T.8
Sullivan, M.B.9
Giovannoni, S.J.10
-
10
-
-
84922964128
-
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell and environmental genomics
-
Roux S, Hawley AK, Beltran MT, Scofield M, Schwientek P, Stepanauskas R, Woyke T, Hallam SJ, Sullivan MB. 2014. Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell and environmental genomics. Elife 3:03125. http://dx.doi.org/10.7554/eLife.03125.
-
(2014)
Elife
, vol.3
, pp. 03125
-
-
Roux, S.1
Hawley, A.K.2
Beltran, M.T.3
Scofield, M.4
Schwientek, P.5
Stepanauskas, R.6
Woyke, T.7
Hallam, S.J.8
Sullivan, M.B.9
-
11
-
-
84900502880
-
Sulfur oxidation genes in diverse deep-sea viruses
-
Anantharaman K, Duhaime MB, Breier J A, Wendt KA, Toner BM, Dick GJ. 2014. Sulfur oxidation genes in diverse deep-sea viruses. Science 344:757-760. http://dx.doi.org/10.1126/science.1252229.
-
(2014)
Science
, vol.344
, pp. 757-760
-
-
Anantharaman, K.1
Duhaime, M.B.2
Breier, J.A.3
Wendt, K.A.4
Toner, B.M.5
Dick, G.J.6
-
12
-
-
84906254581
-
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
-
Deng L, Ignacio-Espinoza JC, Gregory AC, Poulos BT, Weitz JS, Hugenholtz P, Sullivan MB. 2014. Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature 513:242-245. http://dx.doi.org/10.1038/nature13459.
-
(2014)
Nature
, vol.513
, pp. 242-245
-
-
Deng, L.1
Ignacio-Espinoza, J.C.2
Gregory, A.C.3
Poulos, B.T.4
Weitz, J.S.5
Hugenholtz, P.6
Sullivan, M.B.7
-
13
-
-
84921568760
-
Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome
-
5 August 2014
-
Hurwitz BH, Brum JR, Sullivan MB. 5 August 2014. Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome. ISME J http://dx.doi.org/10.1038/ismej.2014.143.
-
ISME J
-
-
Hurwitz, B.H.1
Brum, J.R.2
Sullivan, M.B.3
-
14
-
-
84904624132
-
Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses
-
Hurwitz BL, Westveld AH, Brum J R, Sullivan MB. 2014. Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses. Proc Natl Acad Sci USA 111:10714-10719://dx.doi.org/10.1073/pnas.1319778111.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 10714-10719
-
-
Hurwitz, B.L.1
Westveld, A.H.2
Brum, J.R.3
Sullivan, M.B.4
-
15
-
-
84922974750
-
Rising to the challenge: accelerated pace of discovery transforms marine virology
-
in press
-
Brum JR, Sullivan MB. Rising to the challenge: accelerated pace of discovery transforms marine virology. Nat Rev Microbiol, in press.
-
Nat Rev Microbiol
-
-
Brum, J.R.1
Sullivan, M.B.2
-
16
-
-
84899552918
-
MetaVir 2: new tools for viral metagenome comparison and assembled virome analysis
-
Roux S, Tournayre J, Mahul A, Debroas D, Enault F. 2014. MetaVir 2: new tools for viral metagenome comparison and assembled virome analysis.BMC Bioinformatics 15:76. http://dx.doi.org/10.1186/1471-2105-15-76.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 76
-
-
Roux, S.1
Tournayre, J.2
Mahul, A.3
Debroas, D.4
Enault, F.5
-
17
-
-
84870708679
-
VIROME: a standard operating procedure for classification of viral metagenome sequences
-
Wommack KE, Polson SW, Bhaysar J, Srinivasiah S, Jamindar S, Dumas M. 2011. VIROME: a standard operating procedure for classification of viral metagenome sequences. Stand Genomic Sci 4:427-439. http://dx.doi.org/10.4056/sigs.2945050.
-
(2011)
Stand Genomic Sci
, vol.4
, pp. 427-439
-
-
Wommack, K.E.1
Polson, S.W.2
Bhaysar, J.3
Srinivasiah, S.4
Jamindar, S.5
Dumas, M.6
-
18
-
-
84914706590
-
Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses
-
Sakowski EG, Munsell EV, Hyatt M, Kress W, Williamson SJ, Nasko DJ, Polson SW, Wommack KE. 2014. Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses. Proc Natl Acad Sci USA 111:15786-15791. http://dx.doi.org/10.1073/pnas.1401322111.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 15786-15791
-
-
Sakowski, E.G.1
Munsell, E.V.2
Hyatt, M.3
Kress, W.4
Williamson, S.J.5
Nasko, D.J.6
Polson, S.W.7
Wommack, K.E.8
-
19
-
-
84887380143
-
Metabolic reprogramming by viruses in the sunlit and dark ocean
-
Hurwitz BL, Hallam SJ, Sullivan MB. 2013. Metabolic reprogramming by viruses in the sunlit and dark ocean. Genome Biol 14:R123. http://dx.doi.org/10.1186/gb-2013-14-11-r123.
-
(2013)
Genome Biol
, vol.14
, pp. R123
-
-
Hurwitz, B.L.1
Hallam, S.J.2
Sullivan, M.B.3
|