메뉴 건너뛰기




Volumn 25, Issue 3, 2019, Pages 444-453.e3

Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

Author keywords

human microbiome; metagenomics; non Western population; omnivore diet; vegan diet; vegetarian diet; Western population

Indexed keywords

BRANCHED CHAIN AMINO ACID; CARBOHYDRATE; GLIBENCLAMIDE; GLUCOSE;

EID: 85062433308     PISSN: 19313128     EISSN: 19346069     Source Type: Journal    
DOI: 10.1016/j.chom.2019.01.004     Document Type: Article
Times cited : (249)

References (58)
  • 3
    • 85023186212 scopus 로고    scopus 로고
    • The human microbiome
    • Blum, H.E., The human microbiome. Adv. Med. Sci. 62 (2017), 414–420.
    • (2017) Adv. Med. Sci. , vol.62 , pp. 414-420
    • Blum, H.E.1
  • 5
    • 85049137140 scopus 로고    scopus 로고
    • Human gut microbiomes: hopes, threats and promises
    • Cani, P.D., Human gut microbiomes: hopes, threats and promises. Gut 67 (2018), 1716–1725.
    • (2018) Gut , vol.67 , pp. 1716-1725
    • Cani, P.D.1
  • 6
    • 77957151956 scopus 로고    scopus 로고
    • SolexaQA: at-a-glance quality assessment of Illumina second generation sequencing data
    • Cox, M.P., Peterson, D.A., Biggs, P.J., SolexaQA: at-a-glance quality assessment of Illumina second generation sequencing data. BMC Bioinformatics, 11, 2010, 485.
    • (2010) BMC Bioinformatics , vol.11 , pp. 485
    • Cox, M.P.1    Peterson, D.A.2    Biggs, P.J.3
  • 10
    • 84995752489 scopus 로고    scopus 로고
    • Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patterns
    • De Filippis, F., Pellegrini, N., Laghi, L., Gobbetti, M., Ercolini, D., Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patterns. Microbiome, 4, 2016, 57.
    • (2016) Microbiome , vol.4 , pp. 57
    • De Filippis, F.1    Pellegrini, N.2    Laghi, L.3    Gobbetti, M.4    Ercolini, D.5
  • 11
    • 85053773764 scopus 로고    scopus 로고
    • Dietary interventions to modulate the gut microbiome: how far away are we from precision medicine
    • De Filippis, F., Vitaglione, P., Cuomo, R., Berni Canani, R., Ercolini, D., Dietary interventions to modulate the gut microbiome: how far away are we from precision medicine. Inflamm. Bowel Dis. 24 (2018), 2142–2154.
    • (2018) Inflamm. Bowel Dis. , vol.24 , pp. 2142-2154
    • De Filippis, F.1    Vitaglione, P.2    Cuomo, R.3    Berni Canani, R.4    Ercolini, D.5
  • 14
    • 84994029328 scopus 로고    scopus 로고
    • Rethinking diet to aid human–microbe symbiosis
    • Derrien, M., Veiga, P., Rethinking diet to aid human–microbe symbiosis. Trends Microbiol. 25 (2017), 100–112.
    • (2017) Trends Microbiol. , vol.25 , pp. 100-112
    • Derrien, M.1    Veiga, P.2
  • 16
    • 84921417416 scopus 로고    scopus 로고
    • Identifying strains that contribute to complex diseases through the study of microbial inheritance
    • Faith, J.J., Colombel, J.F., Gordon, J.I., Identifying strains that contribute to complex diseases through the study of microbial inheritance. Proc. Natl. Acad. Sci. U S A 112 (2015), 633–640.
    • (2015) Proc. Natl. Acad. Sci. U S A , vol.112 , pp. 633-640
    • Faith, J.J.1    Colombel, J.F.2    Gordon, J.I.3
  • 18
    • 84875369840 scopus 로고    scopus 로고
    • An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice
    • Fei, N., Zhao, L., An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice. ISME J. 7 (2013), 880–884.
    • (2013) ISME J. , vol.7 , pp. 880-884
    • Fei, N.1    Zhao, L.2
  • 19
    • 20144372744 scopus 로고    scopus 로고
    • Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
    • Gill, S.R., Fouts, D.E., Archer, G.L., Mongodin, E.F., Deboy, R.T., Ravel, J., Paulsen, I.T., Kolonay, J.F., Brinkac, L., Beanan, M., et al. Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. J. Bacteriol. 187 (2005), 2426–2438.
    • (2005) J. Bacteriol. , vol.187 , pp. 2426-2438
    • Gill, S.R.1    Fouts, D.E.2    Archer, G.L.3    Mongodin, E.F.4    Deboy, R.T.5    Ravel, J.6    Paulsen, I.T.7    Kolonay, J.F.8    Brinkac, L.9    Beanan, M.10
  • 20
    • 84922735613 scopus 로고    scopus 로고
    • Extensive strain-level copy-number variation across human gut microbiome species
    • Greenblum, S., Carr, R., Borenstein, E., Extensive strain-level copy-number variation across human gut microbiome species. Cell 160 (2015), 583–594.
    • (2015) Cell , vol.160 , pp. 583-594
    • Greenblum, S.1    Carr, R.2    Borenstein, E.3
  • 21
    • 84880439384 scopus 로고    scopus 로고
    • Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta
    • Haiser, H.J., Gootenberg, D.B., Chatman, K., Sirasani, G., Balskus, E.P., Turnbaugh, P.J., Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta. Science 341 (2013), 295–298.
    • (2013) Science , vol.341 , pp. 295-298
    • Haiser, H.J.1    Gootenberg, D.B.2    Chatman, K.3    Sirasani, G.4    Balskus, E.P.5    Turnbaugh, P.J.6
  • 24
    • 84865561269 scopus 로고    scopus 로고
    • Gene and translation initiation site prediction in metagenomic sequences
    • Hyatt, D., LoCascio, P.F., Hauser, L.J., Uberbacher, E.C., Gene and translation initiation site prediction in metagenomic sequences. Bioinformatics 28 (2012), 2223–2230.
    • (2012) Bioinformatics , vol.28 , pp. 2223-2230
    • Hyatt, D.1    LoCascio, P.F.2    Hauser, L.J.3    Uberbacher, E.C.4
  • 27
    • 84956660868 scopus 로고    scopus 로고
    • Gut microbiota in 2015: Prevotella in the gut: choose carefully
    • Ley, R.E., Gut microbiota in 2015: Prevotella in the gut: choose carefully. Nat. Rev. Gastroenterol. Hepatol. 13 (2016), 69–70.
    • (2016) Nat. Rev. Gastroenterol. Hepatol. , vol.13 , pp. 69-70
    • Ley, R.E.1
  • 30
    • 84924375353 scopus 로고    scopus 로고
    • HIV-induced alteration in gut microbiota: driving factors, consequences, and effects of antiretroviral therapy
    • Lozupone, C.A., Rhodes, M.E., Neff, C.P., Fontenot, A.P., Campbell, T.B., Palmer, B.E., HIV-induced alteration in gut microbiota: driving factors, consequences, and effects of antiretroviral therapy. Gut Microbes 5 (2014), 562–570.
    • (2014) Gut Microbes , vol.5 , pp. 562-570
    • Lozupone, C.A.1    Rhodes, M.E.2    Neff, C.P.3    Fontenot, A.P.4    Campbell, T.B.5    Palmer, B.E.6
  • 35
    • 84977072563 scopus 로고    scopus 로고
    • Genomic diversity of enterotoxigenic strains of Bacteroides fragilis
    • Pierce, J.V., Bernstein, H.D., Genomic diversity of enterotoxigenic strains of Bacteroides fragilis. PLoS One, 11, 2016, e0158171.
    • (2016) PLoS One , vol.11 , pp. e0158171
    • Pierce, J.V.1    Bernstein, H.D.2
  • 40
    • 84937424152 scopus 로고    scopus 로고
    • Gut microbiome: westernization and disappearance of intestinal diversity
    • R611–613
    • Segata, N., Gut microbiome: westernization and disappearance of intestinal diversity. Curr. Biol., 25, 2015 R611–613.
    • (2015) Curr. Biol. , vol.25
    • Segata, N.1
  • 41
    • 84994792268 scopus 로고    scopus 로고
    • The central nervous system and the gut microbiome
    • Sharon, G., Sampson, T.R., Geschwind, D.H., Mazmanian, S.K., The central nervous system and the gut microbiome. Cell 167 (2016), 915–932.
    • (2016) Cell , vol.167 , pp. 915-932
    • Sharon, G.1    Sampson, T.R.2    Geschwind, D.H.3    Mazmanian, S.K.4
  • 42
    • 65649133988 scopus 로고    scopus 로고
    • Comparative genomics of Enterococcus faecalis from healthy Norwegian infants
    • Solheim, M., Aakra, A., Snipen, L.G., Brede, D.A., Nes, I.F., Comparative genomics of Enterococcus faecalis from healthy Norwegian infants. BMC Genomics, 10, 2009, 194.
    • (2009) BMC Genomics , vol.10 , pp. 194
    • Solheim, M.1    Aakra, A.2    Snipen, L.G.3    Brede, D.A.4    Nes, I.F.5
  • 43
    • 84910138842 scopus 로고    scopus 로고
    • Starving our microbial self: the deleterious consequences of a diet deficient in microbiota-accessible carbohydrates
    • Sonnenburg, E.D., Sonnenburg, J.L., Starving our microbial self: the deleterious consequences of a diet deficient in microbiota-accessible carbohydrates. Cell Metab. 20 (2014), 779–786.
    • (2014) Cell Metab. , vol.20 , pp. 779-786
    • Sonnenburg, E.D.1    Sonnenburg, J.L.2
  • 44
    • 84977622019 scopus 로고    scopus 로고
    • Diet-microbiota interactions as moderators of human metabolism
    • Sonnenburg, J.L., Bäckhed, F., Diet-microbiota interactions as moderators of human metabolism. Nature 535 (2016), 56–64.
    • (2016) Nature , vol.535 , pp. 56-64
    • Sonnenburg, J.L.1    Bäckhed, F.2
  • 45
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis, A., RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30 (2014), 1312–1313.
    • (2014) Bioinformatics , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 47
    • 85017527948 scopus 로고    scopus 로고
    • Microbial strain-level population structure and genetic diversity from metagenomes
    • Truong, D.T., Tett, A., Pasolli, E., Huttenhower, C., Segata, N., Microbial strain-level population structure and genetic diversity from metagenomes. Genome Res. 27 (2017), 626–638.
    • (2017) Genome Res. , vol.27 , pp. 626-638
    • Truong, D.T.1    Tett, A.2    Pasolli, E.3    Huttenhower, C.4    Segata, N.5
  • 51
    • 84922753686 scopus 로고    scopus 로고
    • Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber
    • Vitaglione, P., Mennella, I., Ferracane, R., Rivellese, A.A., Giacco, R., Ercolini, D., Gibbons, S.M., La Storia, A., Gilbert, J.A., Jonnalagadda, S., et al. Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber. Am. J. Clin. Nutr. 101 (2015), 251–261.
    • (2015) Am. J. Clin. Nutr. , vol.101 , pp. 251-261
    • Vitaglione, P.1    Mennella, I.2    Ferracane, R.3    Rivellese, A.A.4    Giacco, R.5    Ercolini, D.6    Gibbons, S.M.7    La Storia, A.8    Gilbert, J.A.9    Jonnalagadda, S.10
  • 52
    • 35448985445 scopus 로고    scopus 로고
    • Bacteroides: the good, the bad, and the nitty-gritty
    • Wexler, H.M., Bacteroides: the good, the bad, and the nitty-gritty. Clin. Microbiol. Rev. 20 (2007), 593–621.
    • (2007) Clin. Microbiol. Rev. , vol.20 , pp. 593-621
    • Wexler, H.M.1
  • 53
    • 85014745551 scopus 로고    scopus 로고
    • Genomic microdiversity of Bifidobacterium pseudocatenulatum underlying differential strain-level responses to dietary carbohydrate intervention
    • e02348–16
    • Wu, G., Zhang, C., Wu, H., Wang, R., Shen, J., Wang, L., Zhao, Y., Pang, X., Zhang, X., Zhao, L., et al. Genomic microdiversity of Bifidobacterium pseudocatenulatum underlying differential strain-level responses to dietary carbohydrate intervention. mBio, 8, 2017 e02348–16.
    • (2017) mBio , vol.8
    • Wu, G.1    Zhang, C.2    Wu, H.3    Wang, R.4    Shen, J.5    Wang, L.6    Zhao, Y.7    Pang, X.8    Zhang, X.9    Zhao, L.10
  • 56
    • 84963799511 scopus 로고    scopus 로고
    • Strain-level dissection of the contribution of the gut microbiome to human metabolic disease
    • Zhang, C., Zhao, L., Strain-level dissection of the contribution of the gut microbiome to human metabolic disease. Genome Med., 8, 2016, 41.
    • (2016) Genome Med. , vol.8 , pp. 41
    • Zhang, C.1    Zhao, L.2
  • 58
    • 84959523025 scopus 로고    scopus 로고
    • Taking it personally: personalized utilization of the human microbiome in health and disease
    • Zmora, N., Zeevi, D., Korem, T., Segal, E., Elinav, E., Taking it personally: personalized utilization of the human microbiome in health and disease. Cell Host Microbe 19 (2016), 12–20.
    • (2016) Cell Host Microbe , vol.19 , pp. 12-20
    • Zmora, N.1    Zeevi, D.2    Korem, T.3    Segal, E.4    Elinav, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.