메뉴 건너뛰기




Volumn 47, Issue D1, 2019, Pages D1018-D1027

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

(69)  Köhler, Sebastian a,b,c   Carmody, Leigh c,d   Vasilevsky, Nicole c,e   Jacobsen, Julius O B c,f   Danis, Daniel c,d   Gourdine, Jean Philippe c,e   Gargano, Michael c,d   Harris, Nomi L c,g   Matentzoglu, Nicolas c,h   McMurry, Julie A c,i   Osumi Sutherland, David c,h   Cipriani, Valentina c,j,k,l   Balhoff, James P c,m   Conlin, Tom c,i   Blau, Hannah c,d   Baynam, Gareth n,o,p,q   Palmer, Richard q   Gratian, Dylan n   Dawkins, Hugh n   Segal, Michael r   more..


Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLINICAL FEATURE; DIAGNOSTIC ACCURACY; ELECTRONIC HEALTH RECORD; GENE ONTOLOGY; GENETIC VARIABILITY; HUMAN; HUMAN PHENOTYPE ONTOLOGY; KNOWLEDGE BASE; MEDICAL EDUCATION; PHENOTYPE; PRIORITY JOURNAL; RARE DISEASE; WHOLE EXOME SEQUENCING; WHOLE GENOME SEQUENCING; BIOLOGICAL ONTOLOGY; BIOLOGY; CONGENITAL DISORDER; GENETIC DATABASE; GENETIC PREDISPOSITION; GENETIC VARIATION; GENETICS; INTERNET; PROCEDURES;

EID: 85059796063     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gky1105     Document Type: Article
Times cited : (530)

References (63)
  • 1
    • 84946220722 scopus 로고    scopus 로고
    • Deep phenotyping: The details of disease
    • Delude, C.M. (2015) Deep phenotyping: the details of disease. Nature, 527, S14-S15.
    • (2015) Nature , vol.527 , pp. S14-S15
    • Delude, C.M.1
  • 2
    • 84864332063 scopus 로고    scopus 로고
    • Deep phenotyping for precision medicine
    • Robinson, P.N. (2012) Deep phenotyping for precision medicine. Hum. Mutat., 33, 777-780.
    • (2012) Hum. Mutat , vol.33 , pp. 777-780
    • Robinson, P.N.1
  • 8
    • 85045346313 scopus 로고    scopus 로고
    • Defining disease, diagnosis, and translational medicine within a homeostatic perturbation paradigm: The national institutes of health undiagnosed diseases program experience
    • Gall, T., Valkanas, E., Bello, C., Markello, T., Adams, C., Bone, W.P., Brandt, A.J., Brazill, J.M., Carmichael, L., Davids, M. Et al. (2017) Defining disease, diagnosis, and translational medicine within a homeostatic perturbation paradigm: The national institutes of health undiagnosed diseases program experience. Front. Med., 4, 62.
    • (2017) Front. Med , vol.4 , pp. 62
    • Gall, T.1    Valkanas, E.2    Bello, C.3    Markello, T.4    Adams, C.5    Bone, W.P.6    Brandt, A.J.7    Brazill, J.M.8    Carmichael, L.9    Davids, M.10
  • 18
    • 84977271720 scopus 로고    scopus 로고
    • EHR based genetic testing knowledge base (iGTKB) development
    • Zhu, Q., Liu, H., Chute, C.G. And Ferber, M. (2015) EHR based genetic testing knowledge base (iGTKB) development. BMC Med. Inform. Decis. Mak., 15, S3.
    • (2015) BMC Med. Inform. Decis. Mak , vol.15 , pp. S3
    • Zhu, Q.1    Liu, H.2    Chute, C.G.3    Ferber, M.4
  • 19
    • 85056451962 scopus 로고    scopus 로고
    • PubCaseFinder: A case-report-based, phenotype-driven differential-diagnosis system for rare diseases
    • Fujiwara, T., Yamamoto, Y., Kim, J.-D., Buske, O. And Takagi, T. (2018) PubCaseFinder: A case-report-based, phenotype-driven differential-diagnosis system for rare diseases. Am. J. Hum. Genet., 103, 389-399.
    • (2018) Am. J. Hum. Genet , vol.103 , pp. 389-399
    • Fujiwara, T.1    Yamamoto, Y.2    Kim, J.-D.3    Buske, O.4    Takagi, T.5
  • 27
    • 85052288798 scopus 로고    scopus 로고
    • IDGenetics: A comprehensive database for genes and mutations of intellectual disability related disorders
    • Chen, C., Chen, D., Xue, H., Liu, X., Zhang, T., Tang, S., Li, W. And Xu, X. (2018) IDGenetics: a comprehensive database for genes and mutations of intellectual disability related disorders. Neurosci. Lett., 685, 96-101.
    • (2018) Neurosci. Lett , vol.685 , pp. 96-101
    • Chen, C.1    Chen, D.2    Xue, H.3    Liu, X.4    Zhang, T.5    Tang, S.6    Li, W.7    Xu, X.8
  • 29
    • 85051036639 scopus 로고    scopus 로고
    • HPO2GO: Prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences
    • Do?gan, T. (2018) HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences. PeerJ, 6, e5298.
    • (2018) PeerJ , vol.6 , pp. e5298
    • Dogan, T.1
  • 30
    • 85049666228 scopus 로고    scopus 로고
    • Phenotype-driven gene prioritization for rare diseases using graph convolution on heterogeneous networks
    • Rao, A., Vg, S., Joseph, T., Kotte, S., Sivadasan, N. And Srinivasan, R. (2018) Phenotype-driven gene prioritization for rare diseases using graph convolution on heterogeneous networks. BMCMed. Genomics, 11, 57.
    • (2018) BMCMed. Genomics , vol.11 , pp. 57
    • Rao, A.1    Vg, S.2    Joseph, T.3    Kotte, S.4    Sivadasan, N.5    Srinivasan, R.6
  • 31
  • 32
    • 85043706476 scopus 로고    scopus 로고
    • Text-mined phenotype annotation and vector-based similarity to improve identification of similar phenotypes and causative genes in monogenic disease patients
    • Saklatvala, J.R., Dand, N. And Simpson, M.A. (2018) Text-mined phenotype annotation and vector-based similarity to improve identification of similar phenotypes and causative genes in monogenic disease patients. Hum. Mutat., 39, 643-652.
    • (2018) Hum. Mutat , vol.39 , pp. 643-652
    • Saklatvala, J.R.1    Dand, N.2    Simpson, M.A.3
  • 34
    • 85049099232 scopus 로고    scopus 로고
    • PhenoRank: Reducing study bias in gene prioritization through simulation
    • Cornish, A.J., David, A. And Sternberg, M.J.E. (2018) PhenoRank: reducing study bias in gene prioritization through simulation. Bioinformatics, 34, 2087-2095.
    • (2018) Bioinformatics , vol.34 , pp. 2087-2095
    • Cornish, A.J.1    David, A.2    Sternberg, M.J.E.3
  • 37
    • 84902316955 scopus 로고    scopus 로고
    • GWAS Central: A comprehensive resource for the comparison and interrogation of genome-wide association studies
    • Beck, T., Hastings, R.K., Gollapudi, S., Free, R.C. And Brookes, A.J. (2014) GWAS Central: a comprehensive resource for the comparison and interrogation of genome-wide association studies. Eur. J. Hum. Genet., 22, 949-952.
    • (2014) Eur. J. Hum. Genet , vol.22 , pp. 949-952
    • Beck, T.1    Hastings, R.K.2    Gollapudi, S.3    Free, R.C.4    Brookes, A.J.5
  • 42
    • 85062186615 scopus 로고    scopus 로고
    • Experience with integrating diagnostic decision support software with electronic health records: Benefits versus risks of information sharing
    • Segal, M.M., Rahm, A.K., Hulse, N.C., Wood, G., Williams, J.L., Feldman, L., Moore, G.J., Gehrum, D., Yefko, M., Mayernick, S. Et al. (2017) Experience with integrating diagnostic decision support software with electronic health records: Benefits versus risks of information sharing. EGEMS, 5, 23.
    • (2017) EGEMS , vol.5 , pp. 23
    • Segal, M.M.1    Rahm, A.K.2    Hulse, N.C.3    Wood, G.4    Williams, J.L.5    Feldman, L.6    Moore, G.J.7    Gehrum, D.8    Yefko, M.9    Mayernick, S.10
  • 43
    • 26844450908 scopus 로고    scopus 로고
    • The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
    • Smith, C.L., Goldsmith, C.-A.W. And Eppig, J.T. (2005) The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information. Genome Biol., 6, R7.
    • (2005) Genome Biol , vol.6 , pp. R7
    • Smith, C.L.1    Goldsmith, C.-A.W.2    Eppig, J.T.3
  • 47
    • 84892959492 scopus 로고    scopus 로고
    • Improved exome prioritization of disease genes through cross-species phenotype comparison
    • Robinson, P.N., Kohler, S., Oellrich, A. And Sanger Mouse Genetics ProjectSangerMouse Genetics Project, Wang, K., Mungall, C.J., Lewis, S.E., Washington, N., Bauer, S., Seelow, D.S. Et al. (2014) Improved exome prioritization of disease genes through cross-species phenotype comparison. Genome Res., 24, 340-348.
    • (2014) Genome Res , vol.24 , pp. 340-348
    • Robinson, P.N.1    Ohler, S.K.2    Oellrich, A.3    Wang, K.4    Mungall, C.J.5    Lewis, S.E.6    Washington, N.7    Bauer, S.8    Seelow, D.S.9
  • 53
    • 84938774642 scopus 로고    scopus 로고
    • Ontorat: Automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns
    • Xiang, Z., Zheng, J., Lin, Y. And He, Y. (2015) Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns. J. Biomed. Semantics, 6, 4.
    • (2015) J. Biomed. Semantics , vol.6 , pp. 4
    • Xiang, Z.1    Zheng, J.2    Lin, Y.3    He, Y.4
  • 54
    • 84867331444 scopus 로고    scopus 로고
    • The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
    • Smith, C.L. And Eppig, J.T. (2012) The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. Mamm. Genome, 23, 653-668.
    • (2012) Mamm. Genome , vol.23 , pp. 653-668
    • Smith, C.L.1    Eppig, J.T.2
  • 55
    • 84945932868 scopus 로고    scopus 로고
    • Analysis of protrusio acetabuli using a CT-based diagnostic method in Korean patients with marfan syndrome: Prevalence and association with other manifestations
    • Chun, K.J., Yang, J.H., Jang, S.Y., Lee, S.H., Gwag, H.B., Chung, T.-Y., Huh, J., Ki, C.S., Sung, K., Choi, S.H. Et al. (2015) Analysis of protrusio acetabuli using a CT-based diagnostic method in korean patients with marfan syndrome: Prevalence and association with other manifestations. J. Korean Med. Sci., 30, 1260-1265.
    • (2015) J. Korean Med. Sci , vol.30 , pp. 1260-1265
    • Chun, K.J.1    Yang, J.H.2    Jang, S.Y.3    Lee, S.H.4    Gwag, H.B.5    Chung, T.-Y.6    Huh, J.7    Ki, C.S.8    Sung, K.9    Choi, S.H.10
  • 56
    • 85050704912 scopus 로고    scopus 로고
    • Improved ontology-based similarity calculations using a study-wise annotation model
    • Kohler, S. (2018) Improved ontology-based similarity calculations using a study-wise annotation model. Database, 2018, doi: 10.1093/database/bay026.
    • (2018) Database , vol.2018
    • Ohler, K.1
  • 57
    • 84954358609 scopus 로고    scopus 로고
    • The Human Phenotype Ontology: A tool for annotating and analyzing human hereditary disease
    • Robinson, P.N., Kohler, S., Bauer, S., Seelow, D., Horn, D. And Mundlos, S. (2008) The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. Am. J. Hum. Genet., 83, 610-615.
    • (2008) Am. J. Hum. Genet , vol.83 , pp. 610-615
    • Robinson, P.N.1    Ohler, K.2    Bauer, S.3    Seelow, D.4    Horn, D.5    Mundlos, S.6
  • 59
    • 85042148094 scopus 로고    scopus 로고
    • Marking 15 years of the genetic and rare diseases information center
    • Lewis, J., Snyder, M. And Hyatt-Knorr, H. (2017) Marking 15 years of the genetic and rare diseases information center. Transl. Sci. Rare Dis., 2, 77-88.
    • (2017) Transl. Sci. Rare Dis , vol.2 , pp. 77-88
    • Lewis, J.1    Snyder, M.2    Hyatt-Knorr, H.3
  • 62
    • 84867302795 scopus 로고    scopus 로고
    • Bayesian ontology querying for accurate and noise-tolerant semantic searches
    • Bauer, S., Kohler, S., Schulz, M.H. And Robinson, P.N. (2012) Bayesian ontology querying for accurate and noise-tolerant semantic searches. Bioinformatics, 28, 2502-2508.
    • (2012) Bioinformatics , vol.28 , pp. 2502-2508
    • Bauer, S.1    Ohler, K.2    Schulz, M.H.3    Robinson, P.N.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.