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Volumn 103, Issue 1, 2018, Pages 58-73

Deep Phenotyping on Electronic Health Records Facilitates Genetic Diagnosis by Clinical Exomes

Author keywords

biomedical informatics; diagnosis; electronic health records; exome; genome; knowledge engineering; natural language processing; next generation sequencing; phenotyping; precision medicine

Indexed keywords

ADOLESCENT; ADULT; ANALYSIS OF VARIANCE; ARTICLE; CHILD; CHONDRODYSPLASIA; CLINICAL ARTICLE; CONTROLLED STUDY; DOCUMENTATION; ELECTRONIC HEALTH RECORD; EXOME; FEMALE; GENETIC COUNSELING; GENETIC SCREENING; GENETIC VARIABILITY; GENOTYPE; HETEROZYGOSITY; HUMAN; MALE; NATURAL LANGUAGE PROCESSING; NEXT GENERATION SEQUENCING; PHENOTYPE; PREDICTIVE VALUE; PRIORITY JOURNAL; RECOGNITION INDEX; SANGER SEQUENCING; WHOLE EXOME SEQUENCING; CHRONIC KIDNEY FAILURE; GENETICS; GENOMICS; INFANT; NEWBORN; PRESCHOOL CHILD; PROCEDURES; RETROSPECTIVE STUDY;

EID: 85048729565     PISSN: 00029297     EISSN: 15376605     Source Type: Journal    
DOI: 10.1016/j.ajhg.2018.05.010     Document Type: Article
Times cited : (98)

References (47)
  • 3
    • 34247149788 scopus 로고    scopus 로고
    • Why do we need a diagnosis? A qualitative study of parents’ experiences, coping and needs, when the newborn child is severely disabled
    • Graungaard, A.H., Skov, L., Why do we need a diagnosis? A qualitative study of parents’ experiences, coping and needs, when the newborn child is severely disabled. Child Care Health Dev. 33 (2007), 296–307.
    • (2007) Child Care Health Dev. , vol.33 , pp. 296-307
    • Graungaard, A.H.1    Skov, L.2
  • 11
    • 84898405421 scopus 로고    scopus 로고
    • The utility of the traditional medical genetics diagnostic evaluation in the context of next-generation sequencing for undiagnosed genetic disorders
    • Shashi, V., McConkie-Rosell, A., Rosell, B., Schoch, K., Vellore, K., McDonald, M., Jiang, Y.-H., Xie, P., Need, A., Goldstein, D.B., The utility of the traditional medical genetics diagnostic evaluation in the context of next-generation sequencing for undiagnosed genetic disorders. Genet. Med. 16 (2014), 176–182.
    • (2014) Genet. Med. , vol.16 , pp. 176-182
    • Shashi, V.1    McConkie-Rosell, A.2    Rosell, B.3    Schoch, K.4    Vellore, K.5    McDonald, M.6    Jiang, Y.-H.7    Xie, P.8    Need, A.9    Goldstein, D.B.10
  • 14
    • 84921633944 scopus 로고    scopus 로고
    • Phen-Gen: Combining phenotype and genotype to analyze rare disorders
    • Javed, A., Agrawal, S., Ng, P.C., Phen-Gen: Combining phenotype and genotype to analyze rare disorders. Nat. Methods 11 (2014), 935–937.
    • (2014) Nat. Methods , vol.11 , pp. 935-937
    • Javed, A.1    Agrawal, S.2    Ng, P.C.3
  • 19
    • 84940611109 scopus 로고    scopus 로고
    • Phenolyzer: Phenotype-based prioritization of candidate genes for human diseases
    • Yang, H., Robinson, P.N., Wang, K., Phenolyzer: Phenotype-based prioritization of candidate genes for human diseases. Nat. Methods 12 (2015), 841–843.
    • (2015) Nat. Methods , vol.12 , pp. 841-843
    • Yang, H.1    Robinson, P.N.2    Wang, K.3
  • 21
    • 79960266560 scopus 로고    scopus 로고
    • Strategies for exome and genome sequence data analysis in disease-gene discovery projects
    • Robinson, P.N., Krawitz, P., Mundlos, S., Strategies for exome and genome sequence data analysis in disease-gene discovery projects. Clin. Genet. 80 (2011), 127–132.
    • (2011) Clin. Genet. , vol.80 , pp. 127-132
    • Robinson, P.N.1    Krawitz, P.2    Mundlos, S.3
  • 22
    • 84939151435 scopus 로고    scopus 로고
    • Phenotype-driven strategies for exome prioritization of human Mendelian disease genes
    • Smedley, D., Robinson, P.N., Phenotype-driven strategies for exome prioritization of human Mendelian disease genes. Genome Med., 7, 2015, 81.
    • (2015) Genome Med. , vol.7 , pp. 81
    • Smedley, D.1    Robinson, P.N.2
  • 24
    • 84954358609 scopus 로고    scopus 로고
    • The Human Phenotype Ontology: A tool for annotating and analyzing human hereditary disease
    • Robinson, P.N., Köhler, S., Bauer, S., Seelow, D., Horn, D., Mundlos, S., The Human Phenotype Ontology: A tool for annotating and analyzing human hereditary disease. Am. J. Hum. Genet. 83 (2008), 610–615.
    • (2008) Am. J. Hum. Genet. , vol.83 , pp. 610-615
    • Robinson, P.N.1    Köhler, S.2    Bauer, S.3    Seelow, D.4    Horn, D.5    Mundlos, S.6
  • 30
    • 85028325567 scopus 로고    scopus 로고
    • Deriving genomic diagnoses without revealing patient genomes
    • Jagadeesh, K.A., Wu, D.J., Birgmeier, J.A., Boneh, D., Bejerano, G., Deriving genomic diagnoses without revealing patient genomes. Science 357 (2017), 692–695.
    • (2017) Science , vol.357 , pp. 692-695
    • Jagadeesh, K.A.1    Wu, D.J.2    Birgmeier, J.A.3    Boneh, D.4    Bejerano, G.5
  • 33
    • 0029442304 scopus 로고
    • Architectural requirements for a multipurpose natural language processor in the clinical environment
    • Friedman, C., Johnson, S.B., Forman, B., Starren, J., Architectural requirements for a multipurpose natural language processor in the clinical environment. Proc. Annu. Symp. Comput. Appl. Med. Care, 1995, 347–351.
    • (1995) Proc. Annu. Symp. Comput. Appl. Med. Care , pp. 347-351
    • Friedman, C.1    Johnson, S.B.2    Forman, B.3    Starren, J.4
  • 34
    • 0035752429 scopus 로고    scopus 로고
    • Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program
    • Aronson, A.R., Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program. Proc. AMIA Symp. 2001 (2001), 17–21.
    • (2001) Proc. AMIA Symp. , vol.2001 , pp. 17-21
    • Aronson, A.R.1
  • 35
    • 77955287813 scopus 로고    scopus 로고
    • An overview of MetaMap: Historical perspective and recent advances
    • Aronson, A.R., Lang, F.M., An overview of MetaMap: Historical perspective and recent advances. J. Am. Med. Inform. Assoc. 17 (2010), 229–236.
    • (2010) J. Am. Med. Inform. Assoc. , vol.17 , pp. 229-236
    • Aronson, A.R.1    Lang, F.M.2
  • 36
    • 85026846968 scopus 로고    scopus 로고
    • R: A Language and Environment for Statistical Computing
    • R Foundation for Statistical Computing
    • R Core Development Team. R: A Language and Environment for Statistical Computing. 2017, R Foundation for Statistical Computing https://www.R-project.org/.
    • (2017)
  • 37
    • 84901236529 scopus 로고    scopus 로고
    • Rare inherited kidney diseases: Challenges, opportunities, and perspectives
    • Devuyst, O., Knoers, N.V., Remuzzi, G., Schaefer, F., Board of the Working Group for Inherited Kidney Diseases of the European Renal Association and European Dialysis and Transplant Association. Rare inherited kidney diseases: Challenges, opportunities, and perspectives. Lancet 383 (2014), 1844–1859.
    • (2014) Lancet , vol.383 , pp. 1844-1859
    • Devuyst, O.1    Knoers, N.V.2    Remuzzi, G.3    Schaefer, F.4
  • 39
    • 0023881159 scopus 로고
    • Metaphyseal chondrodysplasia, Schmid type. Clinical and radiographic delineation with a review of the literature
    • Lachman, R.S., Rimoin, D.L., Spranger, J., Metaphyseal chondrodysplasia, Schmid type. Clinical and radiographic delineation with a review of the literature. Pediatr. Radiol. 18 (1988), 93–102.
    • (1988) Pediatr. Radiol. , vol.18 , pp. 93-102
    • Lachman, R.S.1    Rimoin, D.L.2    Spranger, J.3
  • 41
    • 84964316230 scopus 로고    scopus 로고
    • “Genotype-first” approaches on a curious case of idiopathic progressive cognitive decline
    • Shi, L., Li, B., Huang, Y., Ling, X., Liu, T., Lyon, G.J., Xu, A., Wang, K., “Genotype-first” approaches on a curious case of idiopathic progressive cognitive decline. BMC Med. Genomics, 7, 2014, 66.
    • (2014) BMC Med. Genomics , vol.7 , pp. 66
    • Shi, L.1    Li, B.2    Huang, Y.3    Ling, X.4    Liu, T.5    Lyon, G.J.6    Xu, A.7    Wang, K.8
  • 47
    • 84957863777 scopus 로고    scopus 로고
    • Interoperability between phenotypes in research and healthcare terminologies–Investigating partial mappings between HPO and SNOMED CT
    • Dhombres, F., Bodenreider, O., Interoperability between phenotypes in research and healthcare terminologies–Investigating partial mappings between HPO and SNOMED CT. J. Biomed. Semantics, 7, 2016, 3.
    • (2016) J. Biomed. Semantics , vol.7 , pp. 3
    • Dhombres, F.1    Bodenreider, O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.