-
1
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
Hindorff, L. A. et al. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc. Natl Acad. Sci. USA 106, 9362-9367 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 9362-9367
-
-
Hindorff, L.A.1
-
2
-
-
84865822182
-
Systematic localization of common disease-associated variation in regulatory DNA
-
Maurano, M. T. et al. Systematic localization of common disease-associated variation in regulatory DNA. Science 337, 1190-1195 (2012).
-
(2012)
Science
, vol.337
, pp. 1190-1195
-
-
Maurano, M.T.1
-
3
-
-
84921859918
-
Identification of altered cis-regulatory elements in human disease
-
Mathelier, A., Shi, W. & Wasserman, W. W. Identification of altered cis-regulatory elements in human disease. Trends Genet. 31, 67-76 (2015).
-
(2015)
Trends Genet
, vol.31
, pp. 67-76
-
-
Mathelier, A.1
Shi, W.2
Wasserman, W.W.3
-
4
-
-
84994128778
-
Looking beyond the genes: The role of non-coding variants in human disease
-
Spielmann, M. & Mundlos, S. Looking beyond the genes: The role of non-coding variants in human disease. Human Mol. Genet. 25, 157-165 (2016).
-
(2016)
Human Mol. Genet
, vol.25
, pp. 157-165
-
-
Spielmann, M.1
Mundlos, S.2
-
5
-
-
84943752520
-
Non-coding genetic variants in human disease
-
Zhang, F. & Lupski, J. R. Non-coding genetic variants in human disease. Hum. Mol. Genet. 24, R102-R110 (2015).
-
(2015)
Hum. Mol. Genet
, vol.24
, pp. R102-R110
-
-
Zhang, F.1
Lupski, J.R.2
-
6
-
-
55049108856
-
Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein
-
Jeong, Y. et al. Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein. Nat. Genet. 40, 1348-1353 (2008).
-
(2008)
Nat. Genet
, vol.40
, pp. 1348-1353
-
-
Jeong, Y.1
-
7
-
-
84856009018
-
Disruption of a long distance regulatory region upstream of SOX9 in isolated disorders of sex development
-
Benko, S. et al. Disruption of a long distance regulatory region upstream of SOX9 in isolated disorders of sex development. J. Med. Genet. 48, 825-830 (2011).
-
(2011)
J. Med. Genet
, vol.48
, pp. 825-830
-
-
Benko, S.1
-
8
-
-
84890314164
-
Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia
-
Bhatia, S. et al. Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia. Am. J. Hum. Genet. 93, 1126-1134 (2013).
-
(2013)
Am. J. Hum. Genet
, vol.93
, pp. 1126-1134
-
-
Bhatia, S.1
-
9
-
-
84891347416
-
Recessive mutations in a distal PTF1A enhancer cause isolated pancreatic agenesis
-
Weedon, M. N. et al. Recessive mutations in a distal PTF1A enhancer cause isolated pancreatic agenesis. Nat. Genet. 46, 61-64 (2014).
-
(2014)
Nat. Genet
, vol.46
, pp. 61-64
-
-
Weedon, M.N.1
-
10
-
-
0042810698
-
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
-
Lettice, L. A. et al. A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. Hum. Mol. Genet. 12, 1725-1735 (2003).
-
(2003)
Hum. Mol. Genet
, vol.12
, pp. 1725-1735
-
-
Lettice, L.A.1
-
11
-
-
84891377732
-
Alterations to the remote control of Shh gene expression cause congenital abnormalities
-
Hill, R. E. & Lettice, L. A. Alterations to the remote control of Shh gene expression cause congenital abnormalities. Philos. Trans. R. Soc. Lond. B Biol. Sci. 368, 20120357 (2013).
-
(2013)
Philos. Trans. R. Soc. Lond. B Biol. Sci
, vol.368
, pp. 20120357
-
-
Hill, R.E.1
Lettice, L.A.2
-
12
-
-
9644255692
-
Mutations in PTF1A cause pancreatic and cerebellar agenesis
-
Sellick, G. S. et al. Mutations in PTF1A cause pancreatic and cerebellar agenesis. Nat. Genet. 36, 1301-1305 (2004).
-
(2004)
Nat. Genet
, vol.36
, pp. 1301-1305
-
-
Sellick, G.S.1
-
14
-
-
84928630490
-
Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome
-
Naville, M. et al. Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome. Nat. Commun. 6, 6904 (2015).
-
(2015)
Nat. Commun
, vol.6
, pp. 6904
-
-
Naville, M.1
-
15
-
-
84963601453
-
Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin
-
Whalen, S., Truty, R. M. & Pollard, K. S. Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin. Nat. Genet. 48, 488-496 (2016).
-
(2016)
Nat. Genet
, vol.48
, pp. 488-496
-
-
Whalen, S.1
Truty, R.M.2
Pollard, K.S.3
-
16
-
-
85015982066
-
The human phenotype ontology in 2017
-
Khler, S. et al. The Human Phenotype Ontology in 2017. Nucleic Acids Res. 45, D865-D876 (2017).
-
(2017)
Nucleic Acids Res
, vol.45
, pp. D865-D876
-
-
Khler, S.1
-
17
-
-
84926522440
-
Genetic diagnosis of developmental disorders in the DDD study: A scalable analysis of genome-wide research data
-
Wright, C. F. et al. Genetic diagnosis of developmental disorders in the DDD study: A scalable analysis of genome-wide research data. Lancet 385, 1305-1314 (2015).
-
(2015)
Lancet
, vol.385
, pp. 1305-1314
-
-
Wright, C.F.1
-
18
-
-
85015375341
-
Deciphering Developmental Disorders Study. Prevalence and architecture of de novo mutations in developmental disorders
-
Deciphering Developmental Disorders Study. Prevalence and architecture of de novo mutations in developmental disorders. Nature 542, 433-438 (2017).
-
(2017)
Nature
, vol.542
, pp. 433-438
-
-
-
19
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel, A. et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15, 1034-1050 (2005).
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
-
20
-
-
33846112470
-
VISTA Enhancer Browser a database of tissue-specific human enhancers
-
Visel, A., Minovitsky, S., Dubchak, I. & Pennacchio, L. A. VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Res. 35, D88-D92 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
, pp. D88-D92
-
-
Visel, A.1
Minovitsky, S.2
Dubchak, I.3
Pennacchio, L.A.4
-
21
-
-
84655164920
-
Large-scale discovery of enhancers from human heart tissue
-
May, D. et al. Large-scale discovery of enhancers from human heart tissue. Nat. Genet. 44, 89-93 (2011).
-
(2011)
Nat. Genet
, vol.44
, pp. 89-93
-
-
May, D.1
-
22
-
-
84982253941
-
Analysis of protein-coding genetic variation in 60,706 humans
-
Lek, M. et al. Analysis of protein-coding genetic variation in 60,706 humans. Nature 536, 285-291 (2016).
-
(2016)
Nature
, vol.536
, pp. 285-291
-
-
Lek, M.1
-
23
-
-
77956641239
-
ChIP-Seq identification of weakly conserved heart enhancers
-
Blow, M. J. et al. ChIP-Seq identification of weakly conserved heart enhancers. Nat. Genet. 42, 806-810 (2010).
-
(2010)
Nat. Genet
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
-
24
-
-
84895858942
-
A general framework for estimating the relative pathogenicity of human genetic variants
-
Kircher, M. et al. A general framework for estimating the relative pathogenicity of human genetic variants. Nat. Genet. 46, 310-315 (2014).
-
(2014)
Nat. Genet
, vol.46
, pp. 310-315
-
-
Kircher, M.1
-
25
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
Kundaje, A. et al. Integrative analysis of 111 reference human epigenomes. Nature 518, 317-330 (2015).
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
Kundaje, A.1
-
26
-
-
84922394049
-
A framework for the interpretation of de novo mutation in human disease
-
Samocha, K. E. et al. A framework for the interpretation of de novo mutation in human disease. Nat. Genet. 46, 944-950 (2014).
-
(2014)
Nat. Genet
, vol.46
, pp. 944-950
-
-
Samocha, K.E.1
-
28
-
-
84911478082
-
Genetic variation in human DNA replication timing
-
Koren, A. et al. Genetic variation in human DNA replication timing. Cell 159, 1015-1026 (2014).
-
(2014)
Cell
, vol.159
, pp. 1015-1026
-
-
Koren, A.1
-
29
-
-
78049354879
-
Fine-scale recombination rate differences between sexes, populations and individuals
-
Kong, A. et al. Fine-scale recombination rate differences between sexes, populations and individuals. Nature 467, 1099-1103 (2010).
-
(2010)
Nature
, vol.467
, pp. 1099-1103
-
-
Kong, A.1
-
30
-
-
84857707318
-
Chrom HMM: Automating chromatin-state discovery and characterization
-
Ernst, J. & Kellis, M. ChromHMM: Automating chromatin-state discovery and characterization. Nat. Methods 9, 215-216 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 215-216
-
-
Ernst, J.1
Kellis, M.2
-
31
-
-
74949092081
-
Detection of nonneutral substitution rates on mammalian phylogenies
-
Pollard, K. S., Hubisz, M. J., Rosenbloom, K. R. & Siepel, A. Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res. 20, 110-121 (2010).
-
(2010)
Genome Res
, vol.20
, pp. 110-121
-
-
Pollard, K.S.1
Hubisz, M.J.2
Rosenbloom, K.R.3
Siepel, A.4
-
32
-
-
84897459814
-
An atlas of active enhancers across human cell types and tissues
-
Andersson, R. et al. An atlas of active enhancers across human cell types and tissues. Nature 507, 455-461 (2014).
-
(2014)
Nature
, vol.507
, pp. 455-461
-
-
Andersson, R.1
-
33
-
-
85016229211
-
EnhancerAtlas: A resource for enhancer annotation and analysis in 105 human cell/tissue types
-
Gao, T. et al. EnhancerAtlas: A resource for enhancer annotation and analysis in 105 human cell/tissue types. Bioinformatics 32, 3543-3551 (2016).
-
(2016)
Bioinformatics
, vol.32
, pp. 3543-3551
-
-
Gao, T.1
-
34
-
-
85026696904
-
Integrative genetic and epigenetic analysis uncovers regulatory mechanisms of autoimmune disease
-
Shooshtari, P., Huang, H. & Cotsapas, C. Integrative genetic and epigenetic analysis uncovers regulatory mechanisms of autoimmune disease. Am. J. Hum. Genet. 101, 75-86 (2016).
-
(2016)
Am. J. Hum. Genet
, vol.101
, pp. 75-86
-
-
Shooshtari, P.1
Huang, H.2
Cotsapas, C.3
-
35
-
-
84889561601
-
Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism
-
Parikshak, N. N. et al. Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism. Cell 155, 1008-1021 (2013).
-
(2013)
Cell
, vol.155
, pp. 1008-1021
-
-
Parikshak, N.N.1
-
36
-
-
22144473057
-
Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes
-
Sandelin, A. et al. Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes. BMC Genomics 5, 99 (2004).
-
(2004)
BMC Genomics
, vol.5
, pp. 99
-
-
Sandelin, A.1
-
37
-
-
34147116715
-
Most rare missense alleles are deleterious in humans: Implications for complex disease and association studies
-
Kryukov, G. V., Pennacchio, L. A. & Sunyaev, S. R. Most rare missense alleles are deleterious in humans: Implications for complex disease and association studies. Am. J. Hum. Genet. 80, 727-739 (2007).
-
(2007)
Am. J. Hum. Genet
, vol.80
, pp. 727-739
-
-
Kryukov, G.V.1
Pennacchio, L.A.2
Sunyaev, S.R.3
-
38
-
-
84954403183
-
Genome sequencing of autism-affected families reveals disruption of putative non-coding regulatory DNA
-
Turner, T. N. et al. Genome sequencing of autism-affected families reveals disruption of putative non-coding regulatory DNA. Am. J. Hum. Genet. 98, 58-74 (2016).
-
(2016)
Am. J. Hum. Genet
, vol.98
, pp. 58-74
-
-
Turner, T.N.1
|