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Volumn 6, Issue 1, 2015, Pages

Ontorat: Automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns

Author keywords

ODP; Ontology design pattern; Ontology development; Ontorat; QTT; Quick term templates

Indexed keywords


EID: 84938774642     PISSN: None     EISSN: 20411480     Source Type: Journal    
DOI: 10.1186/2041-1480-6-4     Document Type: Article
Times cited : (54)

References (28)
  • 2
    • 47149113155 scopus 로고    scopus 로고
    • Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
    • Aranguren ME, Antezana E, Kuiper M, Stevens R: Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology. BMC Bioinformatics 2008,9(Suppl 5):S1. 10.1186/1471-2105-9-S5-S1.
    • (2008) BMC Bioinformatics , vol.9 , pp. S1
    • Aranguren, M.E.1    Antezana, E.2    Kuiper, M.3    Stevens, R.4
  • 4
    • 79959389464 scopus 로고    scopus 로고
    • Scalable representations of diseases in biomedical ontologies
    • Schulz S, Spackman K, James A, Cocos C, Boeker M: Scalable representations of diseases in biomedical ontologies. J Biomed Semantics 2011,2(Suppl 2):S6. 10.1186/2041-1480-2-S2-S6.
    • (2011) J Biomed Semantics , vol.2 , pp. S6
    • Schulz, S.1    Spackman, K.2    James, A.3    Cocos, C.4    Boeker, M.5
  • 6
    • 84938781117 scopus 로고    scopus 로고
    • Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008)
    • Karlsruhe, Germany: CEUR Workshop Proceedings;
    • Presutti V, Daga E, Gangemi A, Salvati A: Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008). Karlsruhe, Germany: CEUR Workshop Proceedings; 2008. http://ontologydesignpatterns.org [ODP]
    • (2008)
    • Presutti, V.1    Daga, E.2    Gangemi, A.3    Salvati, A.4
  • 7
    • 82055164078 scopus 로고    scopus 로고
    • Unintended consequences of existential quantifications in biomedical ontologies
    • Boeker M, Tudose I, Hastings J, Schober D, Schulz S: Unintended consequences of existential quantifications in biomedical ontologies. BMC Bioinformatics 2011, 12:456. 10.1186/1471-2105-12-456.
    • (2011) BMC Bioinformatics , vol.12 , pp. 456
    • Boeker, M.1    Tudose, I.2    Hastings, J.3    Schober, D.4    Schulz, S.5
  • 8
    • 84893359299 scopus 로고    scopus 로고
    • Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology
    • Seddig-Raufie D, Jansen L, Schober D, Boeker M, Grewe N, Schulz S: Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology. J Biomed Semantics 2012,3(Suppl 2):S2. 10.1186/2041-1480-3-S2-S2.
    • (2012) J Biomed Semantics , vol.3 , pp. S2
    • Seddig-Raufie, D.1    Jansen, L.2    Schober, D.3    Boeker, M.4    Grewe, N.5    Schulz, S.6
  • 11
    • 84938815817 scopus 로고    scopus 로고
    • The protege ontology editor http://protege.stanford.edu/
  • 12
    • 85040318744 scopus 로고    scopus 로고
    • M2: a language for mapping spreadsheets to OWL.
    • In OWLED 2010. San Francisco: CEUR Workshop Proceedings;
    • O'Connor M, Halaschek-Wiener C, Musen M: M2: a language for mapping spreadsheets to OWL. In OWLED 2010. San Francisco: CEUR Workshop Proceedings; 2010. http://ceur-ws.org/Vol-614/owled2010_submission_17.pdf
    • (2010)
    • O'Connor, M.1    Halaschek-Wiener, C.2    Musen, M.3
  • 15
    • 84887118225 scopus 로고    scopus 로고
    • Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses
    • Lin Y, He Y: Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses. J Biomed Semantics 2012,3(1):17. 10.1186/2041-1480-3-17.
    • (2012) J Biomed Semantics , vol.3 , Issue.1 , pp. 17
    • Lin, Y.1    He, Y.2
  • 18
    • 73649104640 scopus 로고    scopus 로고
    • OWL 2 web ontology language structural specification and functional-style syntax
    • W3C Recommendation 2nd edition.
    • Motik B, Patel-Schneider PF, Parsia B: OWL 2 web ontology language structural specification and functional-style syntax. W3C Recommendation 2nd edition. 2012.
    • (2012)
    • Motik, B.1    Patel-Schneider, P.F.2    Parsia, B.3
  • 19
    • 84873856433 scopus 로고    scopus 로고
    • In vitro cell and tissue models for studying host-microbe interactions: a review
    • Bermudez-Brito M, Plaza-Diaz J, Fontana L, Munoz-Quezada S, Gil A: In vitro cell and tissue models for studying host-microbe interactions: a review. Br J Nutr 2013,109(Suppl 2):S27-34.
    • (2013) Br J Nutr , vol.109 , pp. S27-34
    • Bermudez-Brito, M.1    Plaza-Diaz, J.2    Fontana, L.3    Munoz-Quezada, S.4    Gil, A.5
  • 20
    • 79959418098 scopus 로고    scopus 로고
    • Proinflammatory caspase-2-mediated macrophage cell death induced by a rough attenuated Brucella suis strain
    • Chen F, Ding X, Ding Y, Xiang Z, Li X, Ghosh D, et al.: Proinflammatory caspase-2-mediated macrophage cell death induced by a rough attenuated Brucella suis strain. Infect Immun 2011,79(6):2460-9. 10.1128/IAI.00050-11.
    • (2011) Infect Immun , vol.79 , Issue.6 , pp. 2460-2469
    • Chen, F.1    Ding, X.2    Ding, Y.3    Xiang, Z.4    Li, X.5    Ghosh, D.6
  • 21
    • 84891766373 scopus 로고    scopus 로고
    • Updates on the web-based VIOLIN vaccine database and analysis system
    • He Y, Racz R, Sayers S, Lin Y, Todd T, Hur J, et al.: Updates on the web-based VIOLIN vaccine database and analysis system. Nucleic Acids Res 2014,42(1):D1124-32.
    • (2014) Nucleic Acids Res , vol.42 , Issue.1 , pp. D1124-D1132
    • He, Y.1    Racz, R.2    Sayers, S.3    Lin, Y.4    Todd, T.5    Hur, J.6
  • 22
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia Of DNA Elements) Project
    • Consortium EP: The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 2004,306(5696):636-40.
    • (2004) Science , vol.306 , Issue.5696 , pp. 636-640
    • Consortium, E.P.1
  • 23
    • 84938777355 scopus 로고    scopus 로고
    • Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations
    • International Conference on Biomedical Ontologies (ICBO 2013); Montreal, Canada
    • Zheng J, Manduchi E, Stoeckert C: Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations. International Conference on Biomedical Ontologies (ICBO 2013) 2013; Montreal, Canada
    • (2013)
    • Zheng, J.1    Manduchi, E.2    Stoeckert, C.3
  • 24
    • 84891757848 scopus 로고    scopus 로고
    • The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines
    • Marcos E, Zhao B, He Y: The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines. J Biomed Semantics 2013, 4:40. 10.1186/2041-1480-4-40.
    • (2013) J Biomed Semantics , vol.4 , pp. 40
    • Marcos, E.1    Zhao, B.2    He, Y.3
  • 28
    • 80052697346 scopus 로고    scopus 로고
    • Mining of vaccine-associated IFN-gamma gene interaction networks using the Vaccine Ontology
    • Ozgur A, Xiang Z, Radev DR, He Y: Mining of vaccine-associated IFN-gamma gene interaction networks using the Vaccine Ontology. J Biomed Semantics 2011,2(Suppl 2):S8. 10.1186/2041-1480-2-S2-S8.
    • (2011) J Biomed Semantics , vol.2 , pp. S8
    • Ozgur, A.1    Xiang, Z.2    Radev, D.R.3    He, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.