-
1
-
-
84878182653
-
Applications of ontology design patterns in biomedical ontologies
-
Mortensen JM, Horridge M, Musen MA, Noy NF: Applications of ontology design patterns in biomedical ontologies. AMIA Annu Symp Proc 2012, 2012:643-52.
-
(2012)
AMIA Annu Symp Proc
, vol.2012
, pp. 643-652
-
-
Mortensen, J.M.1
Horridge, M.2
Musen, M.A.3
Noy, N.F.4
-
2
-
-
47149113155
-
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
-
Aranguren ME, Antezana E, Kuiper M, Stevens R: Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology. BMC Bioinformatics 2008,9(Suppl 5):S1. 10.1186/1471-2105-9-S5-S1.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. S1
-
-
Aranguren, M.E.1
Antezana, E.2
Kuiper, M.3
Stevens, R.4
-
3
-
-
84908031093
-
Ontology design patterns to disambiguate relations between genes and gene products in GENIA
-
Hoehndorf R, Ngonga Ngomo AC, Pyysalo S, Ohta T, Oellrich A, Rebholz-Schuhmann D: Ontology design patterns to disambiguate relations between genes and gene products in GENIA. J Biomed Semantics 2011,2(Suppl 5):S1. 10.1186/2041-1480-2-S5-S1.
-
(2011)
J Biomed Semantics
, vol.2
, pp. S1
-
-
Hoehndorf, R.1
Ngonga Ngomo, A.C.2
Pyysalo, S.3
Ohta, T.4
Oellrich, A.5
Rebholz-Schuhmann, D.6
-
4
-
-
79959389464
-
Scalable representations of diseases in biomedical ontologies
-
Schulz S, Spackman K, James A, Cocos C, Boeker M: Scalable representations of diseases in biomedical ontologies. J Biomed Semantics 2011,2(Suppl 2):S6. 10.1186/2041-1480-2-S2-S6.
-
(2011)
J Biomed Semantics
, vol.2
, pp. S6
-
-
Schulz, S.1
Spackman, K.2
James, A.3
Cocos, C.4
Boeker, M.5
-
6
-
-
84938781117
-
Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008)
-
Karlsruhe, Germany: CEUR Workshop Proceedings;
-
Presutti V, Daga E, Gangemi A, Salvati A: Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008). Karlsruhe, Germany: CEUR Workshop Proceedings; 2008. http://ontologydesignpatterns.org [ODP]
-
(2008)
-
-
Presutti, V.1
Daga, E.2
Gangemi, A.3
Salvati, A.4
-
7
-
-
82055164078
-
Unintended consequences of existential quantifications in biomedical ontologies
-
Boeker M, Tudose I, Hastings J, Schober D, Schulz S: Unintended consequences of existential quantifications in biomedical ontologies. BMC Bioinformatics 2011, 12:456. 10.1186/1471-2105-12-456.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 456
-
-
Boeker, M.1
Tudose, I.2
Hastings, J.3
Schober, D.4
Schulz, S.5
-
8
-
-
84893359299
-
Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology
-
Seddig-Raufie D, Jansen L, Schober D, Boeker M, Grewe N, Schulz S: Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology. J Biomed Semantics 2012,3(Suppl 2):S2. 10.1186/2041-1480-3-S2-S2.
-
(2012)
J Biomed Semantics
, vol.3
, pp. S2
-
-
Seddig-Raufie, D.1
Jansen, L.2
Schober, D.3
Boeker, M.4
Grewe, N.5
Schulz, S.6
-
9
-
-
84949805606
-
Modeling biomedical experimental processes with OBI
-
Brinkman RR, Courtot M, Derom D, Fostel JM, He Y, Lord P, et al.: Modeling biomedical experimental processes with OBI. J Biomed Semantics 2010,1(Suppl 1):S7. 10.1186/2041-1480-1-S1-S7.
-
(2010)
J Biomed Semantics
, vol.1
, pp. S7
-
-
Brinkman, R.R.1
Courtot, M.2
Derom, D.3
Fostel, J.M.4
He, Y.5
Lord, P.6
-
10
-
-
80052087599
-
Overcoming the ontology enrichment bottleneck with quick term tem-plates
-
Rocca-Serra P, Ruttenberg A, O'Connor MJ, Whetzel PL, Schober D, Greenbaum J, et al.: Overcoming the ontology enrichment bottleneck with quick term tem-plates. Appl Ontol 2011,6(1):13-22.
-
(2011)
Appl Ontol
, vol.6
, Issue.1
, pp. 13-22
-
-
Rocca-Serra, P.1
Ruttenberg, A.2
O'Connor, M.J.3
Whetzel, P.L.4
Schober, D.5
Greenbaum, J.6
-
11
-
-
84938815817
-
-
The protege ontology editor http://protege.stanford.edu/
-
-
-
-
12
-
-
85040318744
-
M2: a language for mapping spreadsheets to OWL.
-
In OWLED 2010. San Francisco: CEUR Workshop Proceedings;
-
O'Connor M, Halaschek-Wiener C, Musen M: M2: a language for mapping spreadsheets to OWL. In OWLED 2010. San Francisco: CEUR Workshop Proceedings; 2010. http://ceur-ws.org/Vol-614/owled2010_submission_17.pdf
-
(2010)
-
-
O'Connor, M.1
Halaschek-Wiener, C.2
Musen, M.3
-
14
-
-
84891818110
-
VO: Vaccine ontology
-
Buffalo, NY, USA. Nature Precedings
-
He Y, Cowell L, Diehl AD, Mobley HL, Peters B, Ruttenberg A, et al.: VO: Vaccine ontology. The 1st International Conference on Biomedical Ontology (ICBO-2009): July 24-26 2009; Buffalo, NY, USA. Nature Precedings 2009. http://precedings.nature.com/documents/3552/version/1
-
(2009)
The 1st International Conference on Biomedical Ontology (ICBO-2009)
-
-
He, Y.1
Cowell, L.2
Diehl, A.D.3
Mobley, H.L.4
Peters, B.5
Ruttenberg, A.6
-
15
-
-
84887118225
-
Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses
-
Lin Y, He Y: Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses. J Biomed Semantics 2012,3(1):17. 10.1186/2041-1480-3-17.
-
(2012)
J Biomed Semantics
, vol.3
, Issue.1
, pp. 17
-
-
Lin, Y.1
He, Y.2
-
16
-
-
84902319909
-
CLO: the cell line ontology
-
Sarntivijai S, Lin Y, Xiang Z, Meehan TF, Diehl AD, Vempati UD, et al.: CLO: the cell line ontology. J Biomed Semantics 2014, 5:37. 10.1186/2041-1480-5-37.
-
(2014)
J Biomed Semantics
, vol.5
, pp. 37
-
-
Sarntivijai, S.1
Lin, Y.2
Xiang, Z.3
Meehan, T.F.4
Diehl, A.D.5
Vempati, U.D.6
-
17
-
-
48249087946
-
The Manchester OWL syntax
-
November 10-11 2006; Athens, Georgia, USA. CEUR Workshop Proceedings
-
Horridge M, Drummond N, Goodwin J, Rector AL, Wang HH: The Manchester OWL syntax. OWL: Experiences and Directions (OWLED '06): November 10-11 2006; Athens, Georgia, USA. CEUR Workshop Proceedings 2006, 10.
-
(2006)
OWL: Experiences and Directions (OWLED '06)
, pp. 10
-
-
Horridge, M.1
Drummond, N.2
Goodwin, J.3
Rector, A.L.4
Wang, H.H.5
-
18
-
-
73649104640
-
OWL 2 web ontology language structural specification and functional-style syntax
-
W3C Recommendation 2nd edition.
-
Motik B, Patel-Schneider PF, Parsia B: OWL 2 web ontology language structural specification and functional-style syntax. W3C Recommendation 2nd edition. 2012.
-
(2012)
-
-
Motik, B.1
Patel-Schneider, P.F.2
Parsia, B.3
-
19
-
-
84873856433
-
In vitro cell and tissue models for studying host-microbe interactions: a review
-
Bermudez-Brito M, Plaza-Diaz J, Fontana L, Munoz-Quezada S, Gil A: In vitro cell and tissue models for studying host-microbe interactions: a review. Br J Nutr 2013,109(Suppl 2):S27-34.
-
(2013)
Br J Nutr
, vol.109
, pp. S27-34
-
-
Bermudez-Brito, M.1
Plaza-Diaz, J.2
Fontana, L.3
Munoz-Quezada, S.4
Gil, A.5
-
20
-
-
79959418098
-
Proinflammatory caspase-2-mediated macrophage cell death induced by a rough attenuated Brucella suis strain
-
Chen F, Ding X, Ding Y, Xiang Z, Li X, Ghosh D, et al.: Proinflammatory caspase-2-mediated macrophage cell death induced by a rough attenuated Brucella suis strain. Infect Immun 2011,79(6):2460-9. 10.1128/IAI.00050-11.
-
(2011)
Infect Immun
, vol.79
, Issue.6
, pp. 2460-2469
-
-
Chen, F.1
Ding, X.2
Ding, Y.3
Xiang, Z.4
Li, X.5
Ghosh, D.6
-
21
-
-
84891766373
-
Updates on the web-based VIOLIN vaccine database and analysis system
-
He Y, Racz R, Sayers S, Lin Y, Todd T, Hur J, et al.: Updates on the web-based VIOLIN vaccine database and analysis system. Nucleic Acids Res 2014,42(1):D1124-32.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.1
, pp. D1124-D1132
-
-
He, Y.1
Racz, R.2
Sayers, S.3
Lin, Y.4
Todd, T.5
Hur, J.6
-
22
-
-
7444260846
-
The ENCODE (ENCyclopedia Of DNA Elements) Project
-
Consortium EP: The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 2004,306(5696):636-40.
-
(2004)
Science
, vol.306
, Issue.5696
, pp. 636-640
-
-
Consortium, E.P.1
-
23
-
-
84938777355
-
Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations
-
International Conference on Biomedical Ontologies (ICBO 2013); Montreal, Canada
-
Zheng J, Manduchi E, Stoeckert C: Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations. International Conference on Biomedical Ontologies (ICBO 2013) 2013; Montreal, Canada
-
(2013)
-
-
Zheng, J.1
Manduchi, E.2
Stoeckert, C.3
-
24
-
-
84891757848
-
The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines
-
Marcos E, Zhao B, He Y: The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines. J Biomed Semantics 2013, 4:40. 10.1186/2041-1480-4-40.
-
(2013)
J Biomed Semantics
, vol.4
, pp. 40
-
-
Marcos, E.1
Zhao, B.2
He, Y.3
-
25
-
-
84926304377
-
OBCS: The Ontology of Biological and Clinical Statistics
-
Houston, TX, USA
-
Zheng J, Harris MR, Masci AM, Lin Y, Hero A, Smith B, et al.: OBCS: The Ontology of Biological and Clinical Statistics. The 2014 International Conference on Biomedical Ontologies (ICBO 2014): 2014; Houston, TX, USA 2014, 1-6.
-
(2014)
The 2014 International Conference on Biomedical Ontologies (ICBO 2014)
, pp. 1-6
-
-
Zheng, J.1
Harris, M.R.2
Masci, A.M.3
Lin, Y.4
Hero, A.5
Smith, B.6
-
26
-
-
84874105496
-
Populous: a tool for building OWL ontologies from templates
-
Jupp S, Horridge M, Iannone L, Klein J, Owen S, Schanstra J, et al.: Populous: a tool for building OWL ontologies from templates. BMC Bioinform 2012,13(Suppl 1):S5.
-
(2012)
BMC Bioinform
, vol.13
, pp. S5
-
-
Jupp, S.1
Horridge, M.2
Iannone, L.3
Klein, J.4
Owen, S.5
Schanstra, J.6
-
27
-
-
77955155342
-
OntoFox: web-based support for ontology reuse
-
Xiang Z, Courtot M, Brinkman RR, Ruttenberg A, He Y: OntoFox: web-based support for ontology reuse. BMC Res Notes 2010, 3:175. 10.1186/1756-0500-3-175.
-
(2010)
BMC Res Notes
, vol.3
, pp. 175
-
-
Xiang, Z.1
Courtot, M.2
Brinkman, R.R.3
Ruttenberg, A.4
He, Y.5
-
28
-
-
80052697346
-
Mining of vaccine-associated IFN-gamma gene interaction networks using the Vaccine Ontology
-
Ozgur A, Xiang Z, Radev DR, He Y: Mining of vaccine-associated IFN-gamma gene interaction networks using the Vaccine Ontology. J Biomed Semantics 2011,2(Suppl 2):S8. 10.1186/2041-1480-2-S2-S8.
-
(2011)
J Biomed Semantics
, vol.2
, pp. S8
-
-
Ozgur, A.1
Xiang, Z.2
Radev, D.R.3
He, Y.4
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